HEADER METAL BINDING PROTEIN 17-MAR-15 4YT2 TITLE HMD II FROM METHANOCALDOCOCCUS JANNASCHII COMPND MOL_ID: 1; COMPND 2 MOLECULE: H(2)-FORMING METHYLENETETRAHYDROMETHANOPTERIN COMPND 3 DEHYDROGENASE-RELATED PROTEIN MJ1338; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: ROSSMANN-LIKE DOMAIN, UNP RESIDUES 8-353; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ1338; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS METAL BINDING PROTEIN, ROSSMANN-FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.FUJISHIRO,U.ERMLER,S.SHIMA REVDAT 3 01-MAY-24 4YT2 1 REMARK REVDAT 2 09-SEP-15 4YT2 1 JRNL REVDAT 1 01-JUL-15 4YT2 0 JRNL AUTH T.FUJISHIRO,K.ATAKA,U.ERMLER,S.SHIMA JRNL TITL TOWARDS A FUNCTIONAL IDENTIFICATION OF CATALYTICALLY JRNL TITL 2 INACTIVE [FE]-HYDROGENASE PARALOGS. JRNL REF FEBS J. V. 282 3412 2015 JRNL REFN ISSN 1742-464X JRNL PMID 26094576 JRNL DOI 10.1111/FEBS.13351 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 76311 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3832 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5467 - 4.9477 0.99 2892 164 0.1817 0.2167 REMARK 3 2 4.9477 - 3.9279 0.99 2741 154 0.1496 0.1767 REMARK 3 3 3.9279 - 3.4317 1.00 2767 131 0.1581 0.1982 REMARK 3 4 3.4317 - 3.1180 1.00 2693 149 0.1799 0.2126 REMARK 3 5 3.1180 - 2.8946 1.00 2703 160 0.1806 0.2240 REMARK 3 6 2.8946 - 2.7239 0.99 2671 160 0.1832 0.2212 REMARK 3 7 2.7239 - 2.5875 1.00 2680 147 0.1760 0.2177 REMARK 3 8 2.5875 - 2.4749 1.00 2717 113 0.1786 0.2141 REMARK 3 9 2.4749 - 2.3796 1.00 2677 140 0.1796 0.2443 REMARK 3 10 2.3796 - 2.2975 1.00 2677 153 0.1803 0.2051 REMARK 3 11 2.2975 - 2.2257 0.99 2656 134 0.1864 0.2558 REMARK 3 12 2.2257 - 2.1621 0.99 2694 134 0.1849 0.2026 REMARK 3 13 2.1621 - 2.1052 1.00 2649 134 0.1799 0.1977 REMARK 3 14 2.1052 - 2.0538 1.00 2719 129 0.1812 0.2017 REMARK 3 15 2.0538 - 2.0071 1.00 2640 153 0.1845 0.2374 REMARK 3 16 2.0071 - 1.9644 1.00 2693 147 0.1861 0.2421 REMARK 3 17 1.9644 - 1.9251 1.00 2639 147 0.1932 0.2129 REMARK 3 18 1.9251 - 1.8888 1.00 2639 151 0.1940 0.2438 REMARK 3 19 1.8888 - 1.8550 1.00 2672 143 0.2055 0.2334 REMARK 3 20 1.8550 - 1.8236 1.00 2643 136 0.2170 0.3120 REMARK 3 21 1.8236 - 1.7942 1.00 2678 135 0.2262 0.2918 REMARK 3 22 1.7942 - 1.7666 1.00 2636 142 0.2334 0.2835 REMARK 3 23 1.7666 - 1.7406 1.00 2658 143 0.2406 0.2526 REMARK 3 24 1.7406 - 1.7161 1.00 2693 132 0.2528 0.2824 REMARK 3 25 1.7161 - 1.6929 1.00 2607 125 0.2520 0.3095 REMARK 3 26 1.6929 - 1.6709 1.00 2716 130 0.2793 0.3109 REMARK 3 27 1.6709 - 1.6500 1.00 2629 146 0.2905 0.3774 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5325 REMARK 3 ANGLE : 1.434 7192 REMARK 3 CHIRALITY : 0.070 855 REMARK 3 PLANARITY : 0.008 914 REMARK 3 DIHEDRAL : 13.996 2011 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0380 -44.9965 -13.8644 REMARK 3 T TENSOR REMARK 3 T11: 0.1557 T22: 0.1095 REMARK 3 T33: 0.1640 T12: 0.0071 REMARK 3 T13: -0.0197 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.3733 L22: 1.7832 REMARK 3 L33: 6.3235 L12: -0.1351 REMARK 3 L13: -1.7962 L23: 0.1015 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.1058 S13: -0.0468 REMARK 3 S21: 0.0778 S22: 0.0225 S23: -0.0236 REMARK 3 S31: 0.2605 S32: 0.1429 S33: -0.0054 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3368 -30.7191 -26.0592 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: 0.1645 REMARK 3 T33: 0.2186 T12: -0.0084 REMARK 3 T13: 0.0242 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 4.0578 L22: 7.4801 REMARK 3 L33: 2.3415 L12: 0.6158 REMARK 3 L13: 0.7393 L23: -0.0378 REMARK 3 S TENSOR REMARK 3 S11: 0.0780 S12: -0.0874 S13: 0.3439 REMARK 3 S21: 0.1420 S22: -0.0040 S23: -0.4860 REMARK 3 S31: -0.1935 S32: 0.1457 S33: -0.0562 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3419 -27.6346 -25.3173 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.1753 REMARK 3 T33: 0.2057 T12: -0.0170 REMARK 3 T13: -0.0103 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.3950 L22: 2.6410 REMARK 3 L33: 0.6818 L12: -0.7898 REMARK 3 L13: -0.2746 L23: 0.4142 REMARK 3 S TENSOR REMARK 3 S11: 0.0540 S12: -0.0578 S13: -0.0697 REMARK 3 S21: -0.0067 S22: -0.0709 S23: 0.2230 REMARK 3 S31: -0.0111 S32: -0.0663 S33: 0.0257 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1365 -8.9158 -15.4346 REMARK 3 T TENSOR REMARK 3 T11: 0.1904 T22: 0.1262 REMARK 3 T33: 0.2033 T12: -0.0035 REMARK 3 T13: 0.0026 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 2.0033 L22: 1.5631 REMARK 3 L33: 2.4593 L12: -0.2170 REMARK 3 L13: -1.0691 L23: 0.3398 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: -0.1666 S13: -0.1480 REMARK 3 S21: 0.2329 S22: 0.0020 S23: 0.1623 REMARK 3 S31: 0.0752 S32: -0.0444 S33: 0.0523 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2892 14.7341 -16.3138 REMARK 3 T TENSOR REMARK 3 T11: 0.2519 T22: 0.2498 REMARK 3 T33: 0.2494 T12: 0.0632 REMARK 3 T13: 0.0470 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 4.2454 L22: 5.8543 REMARK 3 L33: 2.2980 L12: 2.0741 REMARK 3 L13: -0.3650 L23: -0.4676 REMARK 3 S TENSOR REMARK 3 S11: 0.2003 S12: 0.1416 S13: 0.3915 REMARK 3 S21: 0.0003 S22: -0.0601 S23: 0.5614 REMARK 3 S31: -0.2697 S32: -0.3174 S33: -0.1092 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1631 13.4596 -23.4170 REMARK 3 T TENSOR REMARK 3 T11: 0.2663 T22: 0.1855 REMARK 3 T33: 0.1537 T12: -0.0067 REMARK 3 T13: -0.0059 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 7.1551 L22: 3.7445 REMARK 3 L33: 4.6550 L12: -0.8448 REMARK 3 L13: -3.7256 L23: -0.7094 REMARK 3 S TENSOR REMARK 3 S11: 0.1140 S12: 0.4935 S13: -0.2524 REMARK 3 S21: -0.1554 S22: -0.1037 S23: 0.1135 REMARK 3 S31: 0.0218 S32: -0.4128 S33: -0.0249 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.7065 11.3864 -15.6608 REMARK 3 T TENSOR REMARK 3 T11: 0.2754 T22: 0.1883 REMARK 3 T33: 0.2148 T12: -0.0362 REMARK 3 T13: -0.0018 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 4.5257 L22: 4.5835 REMARK 3 L33: 2.8966 L12: 4.9751 REMARK 3 L13: -3.7816 L23: -3.7441 REMARK 3 S TENSOR REMARK 3 S11: -0.0004 S12: -0.2291 S13: -0.0999 REMARK 3 S21: -0.0828 S22: -0.1118 S23: -0.1814 REMARK 3 S31: -0.0170 S32: 0.0796 S33: 0.0610 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 167 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.1346 9.1959 -9.7111 REMARK 3 T TENSOR REMARK 3 T11: 0.2105 T22: 0.2084 REMARK 3 T33: 0.0941 T12: -0.0346 REMARK 3 T13: -0.0354 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 5.4999 L22: 5.6450 REMARK 3 L33: 3.3814 L12: -1.0002 REMARK 3 L13: -2.7468 L23: -0.3930 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: -0.3328 S13: 0.0148 REMARK 3 S21: 0.2150 S22: -0.0385 S23: -0.0584 REMARK 3 S31: -0.2108 S32: 0.1806 S33: -0.0681 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3083 -17.5632 -15.6539 REMARK 3 T TENSOR REMARK 3 T11: 0.2054 T22: 0.1354 REMARK 3 T33: 0.2227 T12: -0.0041 REMARK 3 T13: 0.0510 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 1.5656 L22: 2.3088 REMARK 3 L33: 5.2468 L12: 0.1054 REMARK 3 L13: -0.3964 L23: 0.3109 REMARK 3 S TENSOR REMARK 3 S11: -0.0944 S12: -0.1079 S13: -0.1564 REMARK 3 S21: 0.3012 S22: -0.0979 S23: -0.0349 REMARK 3 S31: 0.5231 S32: 0.1673 S33: 0.1838 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 272 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4240 -27.4358 -13.1895 REMARK 3 T TENSOR REMARK 3 T11: 0.4341 T22: 0.2146 REMARK 3 T33: 0.5860 T12: -0.0200 REMARK 3 T13: 0.1717 T23: 0.0518 REMARK 3 L TENSOR REMARK 3 L11: 8.1346 L22: 4.4408 REMARK 3 L33: 8.8324 L12: -0.0744 REMARK 3 L13: -2.6158 L23: 2.7083 REMARK 3 S TENSOR REMARK 3 S11: -0.3013 S12: -0.4475 S13: -0.5960 REMARK 3 S21: 0.8553 S22: -0.1492 S23: 0.5679 REMARK 3 S31: 1.0901 S32: 0.1020 S33: 0.3617 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 301 THROUGH 322 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.4604 -19.3408 -31.2197 REMARK 3 T TENSOR REMARK 3 T11: 0.2353 T22: 0.2302 REMARK 3 T33: 0.3639 T12: 0.0706 REMARK 3 T13: -0.0241 T23: -0.0306 REMARK 3 L TENSOR REMARK 3 L11: 7.7989 L22: 4.8918 REMARK 3 L33: 5.2760 L12: 4.2866 REMARK 3 L13: 0.1954 L23: -0.7171 REMARK 3 S TENSOR REMARK 3 S11: -0.2372 S12: 0.7224 S13: 0.4161 REMARK 3 S21: -0.2679 S22: 0.2838 S23: 0.7589 REMARK 3 S31: 0.0971 S32: -0.8223 S33: -0.0887 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 323 THROUGH 353 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4200 -0.1287 -27.7339 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.1477 REMARK 3 T33: 0.1642 T12: -0.0357 REMARK 3 T13: -0.0014 T23: -0.0433 REMARK 3 L TENSOR REMARK 3 L11: 8.7649 L22: 4.9547 REMARK 3 L33: 3.3601 L12: -1.3989 REMARK 3 L13: -1.2109 L23: -0.6263 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: 0.3328 S13: 0.3527 REMARK 3 S21: 0.0319 S22: -0.0429 S23: -0.1634 REMARK 3 S31: -0.2775 S32: 0.2454 S33: 0.1221 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A REMARK 3 SELECTION : CHAIN B REMARK 3 ATOM PAIRS NUMBER : 3054 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YT2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : A DOUBLE-CRYSTAL SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76381 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: SEMET-HMDII FROM M. JANNASCHII REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40% (V/V) PEG 300, 100 MM PHOSPHATE REMARK 280 -CITRATE BUFFER, PH 4.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.26000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.77000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.77000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -104.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 8 REMARK 465 VAL A 9 REMARK 465 ASP A 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 99 70.04 -110.55 REMARK 500 THR A 128 -74.32 76.96 REMARK 500 THR A 144 -76.15 -122.62 REMARK 500 SER A 152 -157.34 -146.96 REMARK 500 ASN A 272 86.96 57.19 REMARK 500 PHE B 99 78.78 -104.23 REMARK 500 LYS B 104 -64.54 -96.49 REMARK 500 THR B 128 -75.44 80.67 REMARK 500 THR B 144 -78.88 -119.30 REMARK 500 SER B 152 -156.44 -148.31 REMARK 500 ASN B 272 91.94 54.65 REMARK 500 ASP B 287 -70.75 -22.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4TYE RELATED DB: PDB REMARK 900 RELATED ID: 4YT4 RELATED DB: PDB REMARK 900 RELATED ID: 4YT8 RELATED DB: PDB REMARK 900 RELATED ID: 4YT5 RELATED DB: PDB DBREF 4YT2 A 8 353 UNP Q58734 HMDY_METJA 8 353 DBREF 4YT2 B 8 353 UNP Q58734 HMDY_METJA 8 353 SEQRES 1 A 346 LYS VAL ASP ASN MET LYS VAL SER VAL TYR GLY ALA GLY SEQRES 2 A 346 ASN GLN ASN LEU TYR ILE ASN LYS LEU ASN LEU PRO GLU SEQRES 3 A 346 LYS PHE GLY GLY GLU PRO PRO TYR GLY GLY SER ARG MET SEQRES 4 A 346 ALA ILE GLU PHE ALA GLU ALA GLY HIS ASP VAL VAL LEU SEQRES 5 A 346 ALA GLU PRO ASN LYS ASN ILE MET SER ASP ASP LEU TRP SEQRES 6 A 346 LYS LYS VAL GLU ASP ALA GLY VAL LYS VAL VAL SER ASP SEQRES 7 A 346 ASP VAL GLU ALA ALA LYS HIS GLY GLU ILE HIS VAL LEU SEQRES 8 A 346 PHE THR PRO PHE GLY LYS ALA THR PHE ARG ILE ALA LYS SEQRES 9 A 346 THR ILE ILE GLU HIS VAL PRO GLU ASN ALA VAL ILE CYS SEQRES 10 A 346 ASN THR CYS THR VAL SER PRO VAL VAL LEU TYR TYR SER SEQRES 11 A 346 LEU GLU PRO ILE LEU ARG THR LYS ARG LYS ASP VAL GLY SEQRES 12 A 346 ILE SER SER MET HIS PRO ALA ALA VAL PRO GLY THR PRO SEQRES 13 A 346 GLN HIS GLY HIS TYR VAL ILE GLY GLY LYS THR THR ASP SEQRES 14 A 346 GLY LYS GLU LEU ALA THR GLU GLU GLN ILE LYS LYS ALA SEQRES 15 A 346 VAL GLU LEU ALA LYS SER ALA GLY LYS GLU ALA TYR VAL SEQRES 16 A 346 VAL PRO ALA ASP VAL SER SER VAL VAL ALA ASP MET GLY SEQRES 17 A 346 SER LEU VAL THR ALA VAL ALA LEU SER GLY VAL LEU ASP SEQRES 18 A 346 TYR TYR THR VAL GLY ARG LYS ILE ILE ASN ALA PRO LYS SEQRES 19 A 346 LYS MET ILE GLU GLN GLN VAL ILE MET THR LEU GLN THR SEQRES 20 A 346 MET ALA SER LEU VAL GLU THR SER GLY ILE GLU GLY MET SEQRES 21 A 346 VAL LYS ALA LEU ASN PRO GLU LEU LEU ILE ARG SER ALA SEQRES 22 A 346 SER SER MET LYS LEU LEU ASP ARG GLN LYS ASP LEU ASP SEQRES 23 A 346 ALA ALA LEU GLU ILE LEU GLN ASN LEU ASP GLU THR LEU SEQRES 24 A 346 LYS ALA GLU VAL GLU LYS ALA GLU ILE LYS PRO THR THR SEQRES 25 A 346 LEU VAL ALA ALA GLN SER LEU VAL LYS GLU ILE LYS THR SEQRES 26 A 346 LEU ILE GLY GLY ALA ALA ALA GLU GLY ALA ILE LYS ARG SEQRES 27 A 346 SER ALA ARG LYS LEU PHE GLU HIS SEQRES 1 B 346 LYS VAL ASP ASN MET LYS VAL SER VAL TYR GLY ALA GLY SEQRES 2 B 346 ASN GLN ASN LEU TYR ILE ASN LYS LEU ASN LEU PRO GLU SEQRES 3 B 346 LYS PHE GLY GLY GLU PRO PRO TYR GLY GLY SER ARG MET SEQRES 4 B 346 ALA ILE GLU PHE ALA GLU ALA GLY HIS ASP VAL VAL LEU SEQRES 5 B 346 ALA GLU PRO ASN LYS ASN ILE MET SER ASP ASP LEU TRP SEQRES 6 B 346 LYS LYS VAL GLU ASP ALA GLY VAL LYS VAL VAL SER ASP SEQRES 7 B 346 ASP VAL GLU ALA ALA LYS HIS GLY GLU ILE HIS VAL LEU SEQRES 8 B 346 PHE THR PRO PHE GLY LYS ALA THR PHE ARG ILE ALA LYS SEQRES 9 B 346 THR ILE ILE GLU HIS VAL PRO GLU ASN ALA VAL ILE CYS SEQRES 10 B 346 ASN THR CYS THR VAL SER PRO VAL VAL LEU TYR TYR SER SEQRES 11 B 346 LEU GLU PRO ILE LEU ARG THR LYS ARG LYS ASP VAL GLY SEQRES 12 B 346 ILE SER SER MET HIS PRO ALA ALA VAL PRO GLY THR PRO SEQRES 13 B 346 GLN HIS GLY HIS TYR VAL ILE GLY GLY LYS THR THR ASP SEQRES 14 B 346 GLY LYS GLU LEU ALA THR GLU GLU GLN ILE LYS LYS ALA SEQRES 15 B 346 VAL GLU LEU ALA LYS SER ALA GLY LYS GLU ALA TYR VAL SEQRES 16 B 346 VAL PRO ALA ASP VAL SER SER VAL VAL ALA ASP MET GLY SEQRES 17 B 346 SER LEU VAL THR ALA VAL ALA LEU SER GLY VAL LEU ASP SEQRES 18 B 346 TYR TYR THR VAL GLY ARG LYS ILE ILE ASN ALA PRO LYS SEQRES 19 B 346 LYS MET ILE GLU GLN GLN VAL ILE MET THR LEU GLN THR SEQRES 20 B 346 MET ALA SER LEU VAL GLU THR SER GLY ILE GLU GLY MET SEQRES 21 B 346 VAL LYS ALA LEU ASN PRO GLU LEU LEU ILE ARG SER ALA SEQRES 22 B 346 SER SER MET LYS LEU LEU ASP ARG GLN LYS ASP LEU ASP SEQRES 23 B 346 ALA ALA LEU GLU ILE LEU GLN ASN LEU ASP GLU THR LEU SEQRES 24 B 346 LYS ALA GLU VAL GLU LYS ALA GLU ILE LYS PRO THR THR SEQRES 25 B 346 LEU VAL ALA ALA GLN SER LEU VAL LYS GLU ILE LYS THR SEQRES 26 B 346 LEU ILE GLY GLY ALA ALA ALA GLU GLY ALA ILE LYS ARG SEQRES 27 B 346 SER ALA ARG LYS LEU PHE GLU HIS HET PGE A 401 10 HET PEG A 402 7 HET PEG A 403 7 HET PEG A 404 7 HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 PGE C6 H14 O4 FORMUL 4 PEG 3(C4 H10 O3) FORMUL 7 HOH *321(H2 O) HELIX 1 AA1 ASN A 21 ASN A 27 1 7 HELIX 2 AA2 ASN A 30 PHE A 35 1 6 HELIX 3 AA3 GLY A 42 ALA A 53 1 12 HELIX 4 AA4 ASN A 63 MET A 67 5 5 HELIX 5 AA5 SER A 68 ALA A 78 1 11 HELIX 6 AA6 ASP A 85 GLY A 93 1 9 HELIX 7 AA7 LYS A 104 GLU A 115 1 12 HELIX 8 AA8 SER A 130 ARG A 143 1 14 HELIX 9 AA9 THR A 182 ALA A 196 1 15 HELIX 10 AB1 VAL A 207 ASP A 213 1 7 HELIX 11 AB2 GLY A 215 ILE A 236 1 22 HELIX 12 AB3 PRO A 240 ASN A 272 1 33 HELIX 13 AB4 ASN A 272 SER A 282 1 11 HELIX 14 AB5 GLN A 289 ASN A 301 1 13 HELIX 15 AB6 ASP A 303 ALA A 313 1 11 HELIX 16 AB7 ALA A 322 GLY A 335 1 14 HELIX 17 AB8 GLY A 335 GLU A 352 1 18 HELIX 18 AB9 ASN B 21 ASN B 27 1 7 HELIX 19 AC1 ASN B 30 PHE B 35 1 6 HELIX 20 AC2 GLY B 42 ALA B 53 1 12 HELIX 21 AC3 ASN B 63 MET B 67 5 5 HELIX 22 AC4 SER B 68 ALA B 78 1 11 HELIX 23 AC5 ASP B 85 GLY B 93 1 9 HELIX 24 AC6 LYS B 104 ILE B 114 1 11 HELIX 25 AC7 SER B 130 ARG B 143 1 14 HELIX 26 AC8 THR B 182 LYS B 194 1 13 HELIX 27 AC9 SER B 195 LYS B 198 5 4 HELIX 28 AD1 VAL B 207 ASP B 213 1 7 HELIX 29 AD2 GLY B 215 ILE B 236 1 22 HELIX 30 AD3 PRO B 240 ASN B 272 1 33 HELIX 31 AD4 ASN B 272 SER B 282 1 11 HELIX 32 AD5 GLN B 289 ASN B 301 1 13 HELIX 33 AD6 ASP B 303 ALA B 313 1 11 HELIX 34 AD7 ALA B 322 GLY B 335 1 14 HELIX 35 AD8 GLY B 335 GLU B 352 1 18 SHEET 1 AA1 6 LYS A 81 VAL A 83 0 SHEET 2 AA1 6 ASP A 56 ALA A 60 1 N VAL A 57 O LYS A 81 SHEET 3 AA1 6 LYS A 13 TYR A 17 1 N VAL A 16 O ALA A 60 SHEET 4 AA1 6 ILE A 95 LEU A 98 1 O VAL A 97 N TYR A 17 SHEET 5 AA1 6 VAL A 122 ASN A 125 1 O CYS A 124 N HIS A 96 SHEET 6 AA1 6 GLY A 150 SER A 153 1 O GLY A 150 N ILE A 123 SHEET 1 AA2 2 HIS A 167 GLY A 172 0 SHEET 2 AA2 2 GLU A 199 PRO A 204 1 O TYR A 201 N ILE A 170 SHEET 1 AA3 6 LYS B 81 VAL B 83 0 SHEET 2 AA3 6 ASP B 56 ALA B 60 1 N LEU B 59 O LYS B 81 SHEET 3 AA3 6 LYS B 13 TYR B 17 1 N VAL B 16 O ALA B 60 SHEET 4 AA3 6 ILE B 95 LEU B 98 1 O VAL B 97 N SER B 15 SHEET 5 AA3 6 VAL B 122 ASN B 125 1 O CYS B 124 N HIS B 96 SHEET 6 AA3 6 GLY B 150 SER B 153 1 O GLY B 150 N ILE B 123 SHEET 1 AA4 3 HIS B 155 PRO B 156 0 SHEET 2 AA4 3 HIS B 167 GLY B 172 -1 O VAL B 169 N HIS B 155 SHEET 3 AA4 3 GLU B 199 PRO B 204 1 O TYR B 201 N ILE B 170 CISPEP 1 PRO A 39 PRO A 40 0 2.09 CISPEP 2 PRO B 39 PRO B 40 0 3.56 SITE 1 AC1 6 ASN A 63 ASN A 65 ASN A 272 LEU A 275 SITE 2 AC1 6 HOH A 507 TYR B 201 SITE 1 AC2 5 LYS A 13 LYS A 91 HIS A 92 GLY A 336 SITE 2 AC2 5 HOH A 509 SITE 1 AC3 5 VAL A 259 GLU A 260 LYS B 242 GLU B 245 SITE 2 AC3 5 ARG B 288 SITE 1 AC4 3 CYS A 127 HOH A 652 HOH A 654 CRYST1 52.520 77.810 153.540 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019040 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012852 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006513 0.00000