HEADER CELL CYCLE 18-MAR-15 4YTO TITLE STRUCTURE OF COILED-COIL DOMAIN OF SYCP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SYNAPTONEMAL COMPLEX PROTEIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 662-801; COMPND 5 SYNONYM: SCP-1,CANCER/TESTIS ANTIGEN 8,CT8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SYCP1, SCP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COILED-COIL DOMAIN, SYNEPTONEMAL COMPLEX, SYCP1, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR H.H.PARK REVDAT 1 23-MAR-16 4YTO 0 JRNL AUTH H.H.PARK JRNL TITL STRUCTURE OF COILED-COIL DOMAIN OF SYCP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 38335 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1978 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2813 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1561 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.077 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.788 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1579 ; 0.031 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1625 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2097 ; 2.365 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3782 ; 1.068 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 190 ; 5.253 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;40.397 ;27.067 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;17.940 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;24.718 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 243 ; 0.162 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1696 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 286 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 766 ; 5.793 ; 4.193 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 765 ; 5.793 ; 4.188 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 954 ; 7.146 ; 6.195 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 955 ; 7.143 ; 6.202 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 812 ; 6.893 ; 4.872 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 812 ; 6.894 ; 4.872 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1142 ; 9.798 ; 7.028 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1979 ;11.291 ;33.768 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1979 ;11.273 ;33.763 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YTO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000208091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.6 - 5.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39027 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.78600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.80300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.80300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.89300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.80300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.80300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.67900 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.80300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.80300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 20.89300 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.80300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.80300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.67900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.78600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1026 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 662 REMARK 465 THR A 663 REMARK 465 TYR A 664 REMARK 465 GLN A 665 REMARK 465 LYS A 666 REMARK 465 GLU A 667 REMARK 465 ILE A 668 REMARK 465 GLU A 669 REMARK 465 ASP A 670 REMARK 465 LYS A 671 REMARK 465 LYS A 672 REMARK 465 GLU A 768 REMARK 465 ILE A 769 REMARK 465 GLU A 770 REMARK 465 ARG A 771 REMARK 465 GLU A 772 REMARK 465 GLU A 773 REMARK 465 LYS A 774 REMARK 465 GLU A 775 REMARK 465 LYS A 776 REMARK 465 LEU A 777 REMARK 465 LYS A 778 REMARK 465 ARG A 779 REMARK 465 GLU A 780 REMARK 465 ALA A 781 REMARK 465 LYS A 782 REMARK 465 GLU A 783 REMARK 465 ASN A 784 REMARK 465 THR A 785 REMARK 465 ALA A 786 REMARK 465 THR A 787 REMARK 465 LEU A 788 REMARK 465 LYS A 789 REMARK 465 GLU A 790 REMARK 465 LYS A 791 REMARK 465 LYS A 792 REMARK 465 ASP A 793 REMARK 465 LYS A 794 REMARK 465 LYS A 795 REMARK 465 THR A 796 REMARK 465 GLN A 797 REMARK 465 THR A 798 REMARK 465 PHE A 799 REMARK 465 LEU A 800 REMARK 465 LEU A 801 REMARK 465 LEU A 802 REMARK 465 GLU A 803 REMARK 465 HIS A 804 REMARK 465 HIS A 805 REMARK 465 HIS A 806 REMARK 465 HIS A 807 REMARK 465 HIS A 808 REMARK 465 HIS A 809 REMARK 465 ASP B 662 REMARK 465 THR B 663 REMARK 465 TYR B 664 REMARK 465 GLN B 665 REMARK 465 LYS B 666 REMARK 465 GLU B 667 REMARK 465 ILE B 668 REMARK 465 GLU B 669 REMARK 465 ASP B 670 REMARK 465 LYS B 671 REMARK 465 LYS B 672 REMARK 465 GLU B 770 REMARK 465 ARG B 771 REMARK 465 GLU B 772 REMARK 465 GLU B 773 REMARK 465 LYS B 774 REMARK 465 GLU B 775 REMARK 465 LYS B 776 REMARK 465 LEU B 777 REMARK 465 LYS B 778 REMARK 465 ARG B 779 REMARK 465 GLU B 780 REMARK 465 ALA B 781 REMARK 465 LYS B 782 REMARK 465 GLU B 783 REMARK 465 ASN B 784 REMARK 465 THR B 785 REMARK 465 ALA B 786 REMARK 465 THR B 787 REMARK 465 LEU B 788 REMARK 465 LYS B 789 REMARK 465 GLU B 790 REMARK 465 LYS B 791 REMARK 465 LYS B 792 REMARK 465 ASP B 793 REMARK 465 LYS B 794 REMARK 465 LYS B 795 REMARK 465 THR B 796 REMARK 465 GLN B 797 REMARK 465 THR B 798 REMARK 465 PHE B 799 REMARK 465 LEU B 800 REMARK 465 LEU B 801 REMARK 465 LEU B 802 REMARK 465 GLU B 803 REMARK 465 HIS B 804 REMARK 465 HIS B 805 REMARK 465 HIS B 806 REMARK 465 HIS B 807 REMARK 465 HIS B 808 REMARK 465 HIS B 809 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 691 CD GLU A 691 OE2 -0.074 REMARK 500 GLU A 739 CD GLU A 739 OE1 0.071 REMARK 500 GLU A 750 CD GLU A 750 OE2 0.071 REMARK 500 SER A 754 CB SER A 754 OG -0.101 REMARK 500 GLU B 691 CB GLU B 691 CG -0.131 REMARK 500 GLU B 691 CD GLU B 691 OE2 -0.074 REMARK 500 GLU B 698 CG GLU B 698 CD 0.110 REMARK 500 GLU B 698 CD GLU B 698 OE1 0.076 REMARK 500 TYR B 735 CE1 TYR B 735 CZ -0.083 REMARK 500 SER B 743 CB SER B 743 OG -0.092 REMARK 500 SER B 754 CB SER B 754 OG -0.101 REMARK 500 GLU B 768 CD GLU B 768 OE1 0.115 REMARK 500 GLU B 768 CD GLU B 768 OE2 0.086 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 739 OE1 - CD - OE2 ANGL. DEV. = -7.2 DEGREES REMARK 500 LEU B 679 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG B 746 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 674 148.36 -33.84 REMARK 500 GLN A 766 7.48 -69.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 902 DBREF 4YTO A 662 801 UNP Q15431 SYCP1_HUMAN 662 801 DBREF 4YTO B 662 801 UNP Q15431 SYCP1_HUMAN 662 801 SEQADV 4YTO LEU A 802 UNP Q15431 EXPRESSION TAG SEQADV 4YTO GLU A 803 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS A 804 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS A 805 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS A 806 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS A 807 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS A 808 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS A 809 UNP Q15431 EXPRESSION TAG SEQADV 4YTO LEU B 802 UNP Q15431 EXPRESSION TAG SEQADV 4YTO GLU B 803 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS B 804 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS B 805 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS B 806 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS B 807 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS B 808 UNP Q15431 EXPRESSION TAG SEQADV 4YTO HIS B 809 UNP Q15431 EXPRESSION TAG SEQRES 1 A 148 ASP THR TYR GLN LYS GLU ILE GLU ASP LYS LYS ILE SER SEQRES 2 A 148 GLU GLU ASN LEU LEU GLU GLU VAL GLU LYS ALA LYS VAL SEQRES 3 A 148 ILE ALA ASP GLU ALA VAL LYS LEU GLN LYS GLU ILE ASP SEQRES 4 A 148 LYS ARG CYS GLN HIS LYS ILE ALA GLU MET VAL ALA LEU SEQRES 5 A 148 MET GLU LYS HIS LYS HIS GLN TYR ASP LYS ILE ILE GLU SEQRES 6 A 148 GLU ARG ASP SER GLU LEU GLY LEU TYR LYS SER LYS GLU SEQRES 7 A 148 GLN GLU GLN SER SER LEU ARG ALA SER LEU GLU ILE GLU SEQRES 8 A 148 LEU SER ASN LEU LYS ALA GLU LEU LEU SER VAL LYS LYS SEQRES 9 A 148 GLN LEU GLU ILE GLU ARG GLU GLU LYS GLU LYS LEU LYS SEQRES 10 A 148 ARG GLU ALA LYS GLU ASN THR ALA THR LEU LYS GLU LYS SEQRES 11 A 148 LYS ASP LYS LYS THR GLN THR PHE LEU LEU LEU GLU HIS SEQRES 12 A 148 HIS HIS HIS HIS HIS SEQRES 1 B 148 ASP THR TYR GLN LYS GLU ILE GLU ASP LYS LYS ILE SER SEQRES 2 B 148 GLU GLU ASN LEU LEU GLU GLU VAL GLU LYS ALA LYS VAL SEQRES 3 B 148 ILE ALA ASP GLU ALA VAL LYS LEU GLN LYS GLU ILE ASP SEQRES 4 B 148 LYS ARG CYS GLN HIS LYS ILE ALA GLU MET VAL ALA LEU SEQRES 5 B 148 MET GLU LYS HIS LYS HIS GLN TYR ASP LYS ILE ILE GLU SEQRES 6 B 148 GLU ARG ASP SER GLU LEU GLY LEU TYR LYS SER LYS GLU SEQRES 7 B 148 GLN GLU GLN SER SER LEU ARG ALA SER LEU GLU ILE GLU SEQRES 8 B 148 LEU SER ASN LEU LYS ALA GLU LEU LEU SER VAL LYS LYS SEQRES 9 B 148 GLN LEU GLU ILE GLU ARG GLU GLU LYS GLU LYS LEU LYS SEQRES 10 B 148 ARG GLU ALA LYS GLU ASN THR ALA THR LEU LYS GLU LYS SEQRES 11 B 148 LYS ASP LYS LYS THR GLN THR PHE LEU LEU LEU GLU HIS SEQRES 12 B 148 HIS HIS HIS HIS HIS HET GOL A 901 6 HET GOL A 902 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *155(H2 O) HELIX 1 AA1 SER A 674 GLU A 727 1 54 HELIX 2 AA2 GLU A 727 GLN A 766 1 40 HELIX 3 AA3 SER B 674 GLU B 727 1 54 HELIX 4 AA4 GLU B 727 LEU B 767 1 41 SSBOND 1 CYS A 703 CYS B 703 1555 7645 2.12 SITE 1 AC1 6 GLN A 704 HOH A1019 CYS B 703 LYS B 706 SITE 2 AC1 6 ARG B 728 LEU B 732 SITE 1 AC2 5 ARG A 702 CYS A 703 ARG A 728 LEU A 732 SITE 2 AC2 5 GLN B 704 CRYST1 119.606 119.606 83.572 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008361 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011966 0.00000