HEADER TRANSFERASE/RNA 20-MAR-15 4YVK TITLE CRYSTAL STRUCTURE OF H. INFLUENZAE TRMD IN COMPLEX WITH SINEFUNGIN AND TITLE 2 TRNA VARIANT (G36C) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M1G-METHYLTRANSFERASE,TRNA [GM37] METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.228; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRNA; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE (STRAIN ATCC 51907 / DSM SOURCE 3 11121 / KW20 / RD); SOURCE 4 ORGANISM_TAXID: 71421; SOURCE 5 STRAIN: ATCC 51907 / DSM 11121 / KW20 / RD; SOURCE 6 GENE: TRMD, HI_0202; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 12 ORGANISM_TAXID: 243274 KEYWDS MTASE, SPOUT, TRNA, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.YOSHIDA,T.ITO,S.YOKOYAMA REVDAT 5 08-NOV-23 4YVK 1 REMARK REVDAT 4 19-FEB-20 4YVK 1 JRNL REMARK REVDAT 3 09-SEP-15 4YVK 1 JRNL REVDAT 2 29-JUL-15 4YVK 1 JRNL REVDAT 1 15-JUL-15 4YVK 0 JRNL AUTH T.ITO,I.MASUDA,K.YOSHIDA,S.GOTO-ITO,S.SEKINE,S.W.SUH, JRNL AUTH 2 Y.M.HOU,S.YOKOYAMA JRNL TITL STRUCTURAL BASIS FOR METHYL-DONOR-DEPENDENT AND JRNL TITL 2 SEQUENCE-SPECIFIC BINDING TO TRNA SUBSTRATES BY KNOTTED JRNL TITL 3 METHYLTRANSFERASE TRMD. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 E4197 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26183229 JRNL DOI 10.1073/PNAS.1422981112 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 945 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7296 - 5.7396 1.00 2709 128 0.2188 0.2718 REMARK 3 2 5.7396 - 4.5573 1.00 2536 143 0.2073 0.2740 REMARK 3 3 4.5573 - 3.9816 1.00 2477 148 0.2001 0.2611 REMARK 3 4 3.9816 - 3.6178 1.00 2510 119 0.2122 0.3021 REMARK 3 5 3.6178 - 3.3586 1.00 2454 130 0.2322 0.3040 REMARK 3 6 3.3586 - 3.1606 1.00 2453 144 0.2375 0.3026 REMARK 3 7 3.1606 - 3.0024 0.98 2373 133 0.2892 0.3649 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 43.42 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.16670 REMARK 3 B22 (A**2) : -0.16670 REMARK 3 B33 (A**2) : 0.33340 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 5897 REMARK 3 ANGLE : 1.334 8037 REMARK 3 CHIRALITY : 0.078 948 REMARK 3 PLANARITY : 0.007 767 REMARK 3 DIHEDRAL : 16.884 2352 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YVK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18509 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4YVI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE TRIHYDRATE, AMMONIUM REMARK 280 PHOSPHATE MONOBASIC, PEG 20000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.36000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.72500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.18000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.72500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 171.54000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.72500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.72500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.18000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.72500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.72500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 171.54000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 LEU A 160 REMARK 465 GLY A 161 REMARK 465 LYS A 162 REMARK 465 GLN A 163 REMARK 465 ALA A 164 REMARK 465 SER A 165 REMARK 465 ALA A 166 REMARK 465 GLU A 167 REMARK 465 GLU A 168 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 C C 74 REMARK 465 C C 75 REMARK 465 A C 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 U C 1 P U C 1 OP3 -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G C 23 N3 - C4 - C5 ANGL. DEV. = 3.8 DEGREES REMARK 500 U C 35 C2 - N1 - C1' ANGL. DEV. = -7.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 115 -133.66 58.83 REMARK 500 PHE A 171 -10.66 66.68 REMARK 500 LEU A 223 8.12 -64.92 REMARK 500 TYR B 115 -134.46 58.84 REMARK 500 GLN B 163 64.73 61.86 REMARK 500 PHE B 171 -11.34 67.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SFG B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YVG RELATED DB: PDB REMARK 900 RELATED ID: 4YVH RELATED DB: PDB REMARK 900 RELATED ID: 4YVI RELATED DB: PDB REMARK 900 RELATED ID: 4YVJ RELATED DB: PDB DBREF 4YVK A 1 246 UNP P43912 TRMD_HAEIN 1 246 DBREF 4YVK B 1 246 UNP P43912 TRMD_HAEIN 1 246 DBREF1 4YVK C 1 76 GB AE000512.1 DBREF2 4YVK C 12057205 419338 419265 SEQADV 4YVK MET A -19 UNP P43912 EXPRESSION TAG SEQADV 4YVK GLY A -18 UNP P43912 EXPRESSION TAG SEQADV 4YVK SER A -17 UNP P43912 EXPRESSION TAG SEQADV 4YVK SER A -16 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS A -15 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS A -14 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS A -13 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS A -12 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS A -11 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS A -10 UNP P43912 EXPRESSION TAG SEQADV 4YVK SER A -9 UNP P43912 EXPRESSION TAG SEQADV 4YVK SER A -8 UNP P43912 EXPRESSION TAG SEQADV 4YVK GLY A -7 UNP P43912 EXPRESSION TAG SEQADV 4YVK LEU A -6 UNP P43912 EXPRESSION TAG SEQADV 4YVK VAL A -5 UNP P43912 EXPRESSION TAG SEQADV 4YVK PRO A -4 UNP P43912 EXPRESSION TAG SEQADV 4YVK ARG A -3 UNP P43912 EXPRESSION TAG SEQADV 4YVK GLY A -2 UNP P43912 EXPRESSION TAG SEQADV 4YVK SER A -1 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS A 0 UNP P43912 EXPRESSION TAG SEQADV 4YVK MET B -19 UNP P43912 EXPRESSION TAG SEQADV 4YVK GLY B -18 UNP P43912 EXPRESSION TAG SEQADV 4YVK SER B -17 UNP P43912 EXPRESSION TAG SEQADV 4YVK SER B -16 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS B -15 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS B -14 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS B -13 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS B -12 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS B -11 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS B -10 UNP P43912 EXPRESSION TAG SEQADV 4YVK SER B -9 UNP P43912 EXPRESSION TAG SEQADV 4YVK SER B -8 UNP P43912 EXPRESSION TAG SEQADV 4YVK GLY B -7 UNP P43912 EXPRESSION TAG SEQADV 4YVK LEU B -6 UNP P43912 EXPRESSION TAG SEQADV 4YVK VAL B -5 UNP P43912 EXPRESSION TAG SEQADV 4YVK PRO B -4 UNP P43912 EXPRESSION TAG SEQADV 4YVK ARG B -3 UNP P43912 EXPRESSION TAG SEQADV 4YVK GLY B -2 UNP P43912 EXPRESSION TAG SEQADV 4YVK SER B -1 UNP P43912 EXPRESSION TAG SEQADV 4YVK HIS B 0 UNP P43912 EXPRESSION TAG SEQADV 4YVK C C 36 GB 12057205 G 19304 ENGINEERED MUTATION SEQRES 1 A 266 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 266 LEU VAL PRO ARG GLY SER HIS MET TRP ILE GLY VAL ILE SEQRES 3 A 266 SER LEU PHE PRO GLU MET PHE LYS ALA ILE THR GLU PHE SEQRES 4 A 266 GLY VAL THR GLY ARG ALA VAL LYS HIS ASN LEU LEU LYS SEQRES 5 A 266 VAL GLU CYS TRP ASN PRO ARG ASP PHE THR PHE ASP LYS SEQRES 6 A 266 HIS LYS THR VAL ASP ASP ARG PRO TYR GLY GLY GLY PRO SEQRES 7 A 266 GLY MET LEU MET MET VAL GLN PRO LEU ARG ASP ALA ILE SEQRES 8 A 266 HIS THR ALA LYS ALA ALA ALA GLY GLU GLY ALA LYS VAL SEQRES 9 A 266 ILE TYR LEU SER PRO GLN GLY ARG LYS LEU ASP GLN GLY SEQRES 10 A 266 GLY VAL THR GLU LEU ALA GLN ASN GLN LYS LEU ILE LEU SEQRES 11 A 266 VAL CYS GLY ARG TYR GLU GLY ILE ASP GLU ARG LEU ILE SEQRES 12 A 266 GLN THR GLU ILE ASP GLU GLU TRP SER ILE GLY ASP TYR SEQRES 13 A 266 VAL LEU THR GLY GLY GLU LEU PRO ALA MET THR LEU ILE SEQRES 14 A 266 ASP ALA VAL ALA ARG PHE ILE PRO GLY VAL LEU GLY LYS SEQRES 15 A 266 GLN ALA SER ALA GLU GLU ASP SER PHE ALA ASP GLY LEU SEQRES 16 A 266 LEU ASP CYS PRO HIS TYR THR ARG PRO GLU VAL LEU GLU SEQRES 17 A 266 GLY LEU THR VAL PRO PRO VAL LEU MET SER GLY HIS HIS SEQRES 18 A 266 GLU GLU ILE ARG LYS TRP ARG LEU LYS GLN SER LEU GLN SEQRES 19 A 266 ARG THR TRP LEU ARG ARG PRO GLU LEU LEU GLU GLY LEU SEQRES 20 A 266 ALA LEU THR ASP GLU GLN ARG LYS LEU LEU LYS GLU ALA SEQRES 21 A 266 GLN ALA GLU HIS ASN SER SEQRES 1 B 266 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 266 LEU VAL PRO ARG GLY SER HIS MET TRP ILE GLY VAL ILE SEQRES 3 B 266 SER LEU PHE PRO GLU MET PHE LYS ALA ILE THR GLU PHE SEQRES 4 B 266 GLY VAL THR GLY ARG ALA VAL LYS HIS ASN LEU LEU LYS SEQRES 5 B 266 VAL GLU CYS TRP ASN PRO ARG ASP PHE THR PHE ASP LYS SEQRES 6 B 266 HIS LYS THR VAL ASP ASP ARG PRO TYR GLY GLY GLY PRO SEQRES 7 B 266 GLY MET LEU MET MET VAL GLN PRO LEU ARG ASP ALA ILE SEQRES 8 B 266 HIS THR ALA LYS ALA ALA ALA GLY GLU GLY ALA LYS VAL SEQRES 9 B 266 ILE TYR LEU SER PRO GLN GLY ARG LYS LEU ASP GLN GLY SEQRES 10 B 266 GLY VAL THR GLU LEU ALA GLN ASN GLN LYS LEU ILE LEU SEQRES 11 B 266 VAL CYS GLY ARG TYR GLU GLY ILE ASP GLU ARG LEU ILE SEQRES 12 B 266 GLN THR GLU ILE ASP GLU GLU TRP SER ILE GLY ASP TYR SEQRES 13 B 266 VAL LEU THR GLY GLY GLU LEU PRO ALA MET THR LEU ILE SEQRES 14 B 266 ASP ALA VAL ALA ARG PHE ILE PRO GLY VAL LEU GLY LYS SEQRES 15 B 266 GLN ALA SER ALA GLU GLU ASP SER PHE ALA ASP GLY LEU SEQRES 16 B 266 LEU ASP CYS PRO HIS TYR THR ARG PRO GLU VAL LEU GLU SEQRES 17 B 266 GLY LEU THR VAL PRO PRO VAL LEU MET SER GLY HIS HIS SEQRES 18 B 266 GLU GLU ILE ARG LYS TRP ARG LEU LYS GLN SER LEU GLN SEQRES 19 B 266 ARG THR TRP LEU ARG ARG PRO GLU LEU LEU GLU GLY LEU SEQRES 20 B 266 ALA LEU THR ASP GLU GLN ARG LYS LEU LEU LYS GLU ALA SEQRES 21 B 266 GLN ALA GLU HIS ASN SER SEQRES 1 C 74 U G G G A G G U C G U C U SEQRES 2 C 74 A A C G G U A G G A C G G SEQRES 3 C 74 C G G A C U C U C G A U C SEQRES 4 C 74 C G C U G G U G G A G G U SEQRES 5 C 74 U C G A G U C C U C C C C SEQRES 6 C 74 U C C C A G C C A HET SFG A 301 27 HET SFG B 301 27 HETNAM SFG SINEFUNGIN HETSYN SFG ADENOSYL-ORNITHINE FORMUL 4 SFG 2(C15 H23 N7 O5) HELIX 1 AA1 PHE A 9 MET A 12 5 4 HELIX 2 AA2 PHE A 13 GLU A 18 1 6 HELIX 3 AA3 PHE A 19 HIS A 28 1 10 HELIX 4 AA4 ASN A 37 THR A 42 5 6 HELIX 5 AA5 MET A 63 GLY A 79 1 17 HELIX 6 AA6 ASP A 95 ASN A 105 1 11 HELIX 7 AA7 ASP A 119 ILE A 127 1 9 HELIX 8 AA8 GLY A 141 ARG A 154 1 14 HELIX 9 AA9 PRO A 193 SER A 198 5 6 HELIX 10 AB1 HIS A 200 ARG A 220 1 21 HELIX 11 AB2 PRO A 221 GLU A 225 5 5 HELIX 12 AB3 THR A 230 ASN A 245 1 16 HELIX 13 AB4 PHE B 9 MET B 12 5 4 HELIX 14 AB5 PHE B 13 GLU B 18 1 6 HELIX 15 AB6 PHE B 19 HIS B 28 1 10 HELIX 16 AB7 ASN B 37 THR B 42 5 6 HELIX 17 AB8 MET B 63 GLY B 79 1 17 HELIX 18 AB9 ASP B 95 ALA B 103 1 9 HELIX 19 AC1 ASP B 119 ILE B 127 1 9 HELIX 20 AC2 GLY B 141 ARG B 154 1 14 HELIX 21 AC3 GLN B 163 GLU B 167 5 5 HELIX 22 AC4 PRO B 193 SER B 198 5 6 HELIX 23 AC5 HIS B 200 ARG B 220 1 21 HELIX 24 AC6 GLU B 222 LEU B 227 5 6 HELIX 25 AC7 THR B 230 ASN B 245 1 16 SHEET 1 AA1 6 LEU A 31 TRP A 36 0 SHEET 2 AA1 6 MET A 1 ILE A 6 1 N ILE A 3 O LYS A 32 SHEET 3 AA1 6 LYS A 107 VAL A 111 1 O LEU A 108 N GLY A 4 SHEET 4 AA1 6 LYS A 83 LEU A 87 1 N ILE A 85 O ILE A 109 SHEET 5 AA1 6 GLU A 129 SER A 132 1 O TRP A 131 N TYR A 86 SHEET 6 AA1 6 ARG A 92 LYS A 93 1 N ARG A 92 O GLU A 130 SHEET 1 AA2 2 ASP A 50 ASP A 51 0 SHEET 2 AA2 2 LEU A 61 MET A 62 -1 O LEU A 61 N ASP A 51 SHEET 1 AA3 2 VAL A 186 LEU A 187 0 SHEET 2 AA3 2 LEU A 190 THR A 191 -1 O LEU A 190 N LEU A 187 SHEET 1 AA4 6 LEU B 31 TRP B 36 0 SHEET 2 AA4 6 MET B 1 ILE B 6 1 N MET B 1 O LYS B 32 SHEET 3 AA4 6 LYS B 107 CYS B 112 1 O LEU B 108 N GLY B 4 SHEET 4 AA4 6 LYS B 83 LEU B 87 1 N ILE B 85 O ILE B 109 SHEET 5 AA4 6 GLU B 129 SER B 132 1 O GLU B 129 N TYR B 86 SHEET 6 AA4 6 ARG B 92 LYS B 93 1 N ARG B 92 O SER B 132 SHEET 1 AA5 2 ASP B 50 ASP B 51 0 SHEET 2 AA5 2 LEU B 61 MET B 62 -1 O LEU B 61 N ASP B 51 SHEET 1 AA6 2 VAL B 186 LEU B 187 0 SHEET 2 AA6 2 LEU B 190 THR B 191 -1 O LEU B 190 N LEU B 187 CISPEP 1 ARG A 183 PRO A 184 0 0.23 CISPEP 2 ARG B 183 PRO B 184 0 -0.72 SITE 1 AC1 21 TYR A 86 LEU A 87 SER A 88 PRO A 89 SITE 2 AC1 21 GLN A 90 GLY A 113 TYR A 115 GLU A 116 SITE 3 AC1 21 SER A 132 ILE A 133 GLY A 134 TYR A 136 SITE 4 AC1 21 LEU A 138 THR A 139 GLY A 140 GLY A 141 SITE 5 AC1 21 PRO A 144 ASP B 169 SER B 170 ASP B 177 SITE 6 AC1 21 G C 37 SITE 1 AC2 21 SER A 170 ASP A 177 TYR B 86 LEU B 87 SITE 2 AC2 21 SER B 88 PRO B 89 GLN B 90 GLY B 113 SITE 3 AC2 21 ARG B 114 TYR B 115 GLU B 116 GLY B 117 SITE 4 AC2 21 TRP B 131 SER B 132 ILE B 133 GLY B 134 SITE 5 AC2 21 TYR B 136 LEU B 138 GLY B 140 GLY B 141 SITE 6 AC2 21 PRO B 144 CRYST1 87.450 87.450 228.720 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011435 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011435 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004372 0.00000