HEADER OXIDOREDUCTASE 20-MAR-15 4YWN TITLE CRYSTAL STRUCTURE OF NADH-FMN OXIDOREDUCTASE FROM MYCOBACTERIUM AVIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADH-FMN OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM AVIUM; SOURCE 3 ORGANISM_COMMON: MYAVA.00250.A.A1; SOURCE 4 ORGANISM_TAXID: 243243; SOURCE 5 STRAIN: 104; SOURCE 6 GENE: MAV_4912; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MYAVA.00250.A.A1 KEYWDS SSGCID, MYCOBACTERIUM AVIUM, NADH-FMN OXIDOREDUCTASE, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 27-SEP-23 4YWN 1 REMARK REVDAT 3 22-NOV-17 4YWN 1 REMARK REVDAT 2 26-AUG-15 4YWN 1 REMARK REVDAT 1 01-APR-15 4YWN 0 JRNL AUTH J.ABENDROTH,M.JENSEN,T.L.ARAKAKI,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF NADH-FMN OXIDOREDUCTASE FROM JRNL TITL 2 MYCOBACTERIUM AVIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 28445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0000 - 3.8769 0.99 2934 161 0.1664 0.1814 REMARK 3 2 3.8769 - 3.0776 1.00 2780 156 0.1653 0.2242 REMARK 3 3 3.0776 - 2.6887 1.00 2718 150 0.1972 0.2332 REMARK 3 4 2.6887 - 2.4429 1.00 2671 157 0.1874 0.2175 REMARK 3 5 2.4429 - 2.2679 1.00 2685 132 0.1902 0.2295 REMARK 3 6 2.2679 - 2.1342 1.00 2679 135 0.1869 0.2023 REMARK 3 7 2.1342 - 2.0273 1.00 2635 149 0.1896 0.2714 REMARK 3 8 2.0273 - 1.9390 0.99 2631 125 0.1851 0.2389 REMARK 3 9 1.9390 - 1.8644 1.00 2643 134 0.1954 0.2511 REMARK 3 10 1.8644 - 1.8001 1.00 2642 128 0.2035 0.2503 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.69 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2129 REMARK 3 ANGLE : 0.993 2932 REMARK 3 CHIRALITY : 0.049 367 REMARK 3 PLANARITY : 0.004 378 REMARK 3 DIHEDRAL : 11.695 754 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 18 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7154 -2.3569 32.4160 REMARK 3 T TENSOR REMARK 3 T11: 0.5022 T22: 0.3564 REMARK 3 T33: 0.2721 T12: -0.1476 REMARK 3 T13: 0.0598 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 3.3691 L22: 1.9917 REMARK 3 L33: 3.1242 L12: 1.0210 REMARK 3 L13: -0.9470 L23: -0.8008 REMARK 3 S TENSOR REMARK 3 S11: -0.3697 S12: 0.7275 S13: -0.2893 REMARK 3 S21: -0.7105 S22: 0.5851 S23: -0.1881 REMARK 3 S31: 0.4368 S32: -0.4966 S33: -0.1292 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9693 3.9894 44.7058 REMARK 3 T TENSOR REMARK 3 T11: 0.1917 T22: 0.2394 REMARK 3 T33: 0.1862 T12: 0.0616 REMARK 3 T13: -0.0099 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 5.0360 L22: 1.2915 REMARK 3 L33: 9.4567 L12: 0.5412 REMARK 3 L13: -4.2299 L23: -0.0509 REMARK 3 S TENSOR REMARK 3 S11: -0.0632 S12: -0.0662 S13: -0.0542 REMARK 3 S21: 0.1774 S22: 0.0750 S23: 0.1446 REMARK 3 S31: -0.2317 S32: -0.7369 S33: 0.0355 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7076 8.8364 42.3934 REMARK 3 T TENSOR REMARK 3 T11: 0.3612 T22: 0.2571 REMARK 3 T33: 0.1987 T12: 0.1388 REMARK 3 T13: 0.0257 T23: 0.1038 REMARK 3 L TENSOR REMARK 3 L11: 5.6549 L22: 2.3209 REMARK 3 L33: 6.4228 L12: 1.3735 REMARK 3 L13: -0.5305 L23: 0.5046 REMARK 3 S TENSOR REMARK 3 S11: -0.2226 S12: 0.3835 S13: 0.2275 REMARK 3 S21: 0.3341 S22: 0.2103 S23: 0.2851 REMARK 3 S31: -0.6925 S32: -1.0127 S33: 0.0304 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.6111 -3.8056 42.5070 REMARK 3 T TENSOR REMARK 3 T11: 0.3284 T22: 0.1712 REMARK 3 T33: 0.2182 T12: 0.0474 REMARK 3 T13: -0.0016 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 5.0764 L22: 3.1831 REMARK 3 L33: 3.4381 L12: 1.5649 REMARK 3 L13: 1.1091 L23: 3.1479 REMARK 3 S TENSOR REMARK 3 S11: -0.0351 S12: 0.2864 S13: -0.5031 REMARK 3 S21: -0.7763 S22: 0.3553 S23: -0.1066 REMARK 3 S31: -0.1858 S32: 0.1755 S33: -0.3648 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5317 -0.8697 51.3340 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.1600 REMARK 3 T33: 0.1982 T12: 0.0162 REMARK 3 T13: -0.0174 T23: 0.0196 REMARK 3 L TENSOR REMARK 3 L11: 2.6736 L22: 1.4409 REMARK 3 L33: 7.1527 L12: 0.4246 REMARK 3 L13: 0.0216 L23: 1.2500 REMARK 3 S TENSOR REMARK 3 S11: 0.1056 S12: -0.1447 S13: -0.1575 REMARK 3 S21: 0.2763 S22: -0.0251 S23: -0.0935 REMARK 3 S31: 0.3628 S32: -0.2760 S33: -0.1120 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.2980 8.8919 39.3894 REMARK 3 T TENSOR REMARK 3 T11: 0.2383 T22: 0.1945 REMARK 3 T33: 0.1764 T12: -0.0109 REMARK 3 T13: 0.0765 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 7.1790 L22: 4.0249 REMARK 3 L33: 8.2874 L12: -1.2695 REMARK 3 L13: 1.6953 L23: -0.0613 REMARK 3 S TENSOR REMARK 3 S11: -0.1764 S12: -0.0167 S13: 0.1826 REMARK 3 S21: -0.0716 S22: 0.2120 S23: 0.0161 REMARK 3 S31: -1.0376 S32: -0.6262 S33: -0.0659 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.7580 -0.3578 38.0103 REMARK 3 T TENSOR REMARK 3 T11: 0.7832 T22: 0.6894 REMARK 3 T33: 0.5803 T12: 0.3428 REMARK 3 T13: 0.0606 T23: 0.0791 REMARK 3 L TENSOR REMARK 3 L11: 3.3464 L22: 0.3645 REMARK 3 L33: 7.9427 L12: -0.2250 REMARK 3 L13: 4.2652 L23: -1.2804 REMARK 3 S TENSOR REMARK 3 S11: -0.9748 S12: -1.4696 S13: -0.6735 REMARK 3 S21: 0.5117 S22: 0.9960 S23: -0.0812 REMARK 3 S31: 0.8100 S32: 0.1794 S33: 0.0356 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.0688 8.5795 15.0740 REMARK 3 T TENSOR REMARK 3 T11: 0.1779 T22: 0.1815 REMARK 3 T33: 0.2199 T12: -0.0129 REMARK 3 T13: 0.0382 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 1.9909 L22: 1.6589 REMARK 3 L33: 3.0622 L12: 0.3841 REMARK 3 L13: -0.3664 L23: 2.0907 REMARK 3 S TENSOR REMARK 3 S11: 0.0744 S12: 0.0125 S13: 0.2163 REMARK 3 S21: -0.4378 S22: -0.0069 S23: -0.1254 REMARK 3 S31: 0.1080 S32: -0.1308 S33: -0.0436 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1637 8.7750 19.1318 REMARK 3 T TENSOR REMARK 3 T11: 0.2140 T22: 0.2213 REMARK 3 T33: 0.1443 T12: -0.0800 REMARK 3 T13: -0.0201 T23: -0.0259 REMARK 3 L TENSOR REMARK 3 L11: 2.7537 L22: 4.7914 REMARK 3 L33: 3.2012 L12: 0.9172 REMARK 3 L13: -2.2147 L23: -2.5200 REMARK 3 S TENSOR REMARK 3 S11: -0.3350 S12: 0.1572 S13: -0.0489 REMARK 3 S21: -0.3965 S22: 0.0210 S23: -0.3258 REMARK 3 S31: -0.0189 S32: -0.2037 S33: 0.1968 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3666 6.6269 26.0443 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.2081 REMARK 3 T33: 0.1232 T12: -0.0216 REMARK 3 T13: 0.0432 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.0204 L22: 7.9098 REMARK 3 L33: 5.9436 L12: 3.4782 REMARK 3 L13: -1.0627 L23: -1.2636 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: 0.0255 S13: -0.2015 REMARK 3 S21: 0.0066 S22: -0.0376 S23: 0.0650 REMARK 3 S31: 0.1867 S32: -0.6093 S33: -0.1263 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 59 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9524 17.4649 17.9413 REMARK 3 T TENSOR REMARK 3 T11: 0.4231 T22: 0.2668 REMARK 3 T33: 0.2305 T12: -0.0068 REMARK 3 T13: 0.0060 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 6.7590 L22: 4.5012 REMARK 3 L33: 4.3659 L12: 1.9660 REMARK 3 L13: 4.7906 L23: 2.7530 REMARK 3 S TENSOR REMARK 3 S11: -0.6450 S12: -0.1744 S13: 0.4249 REMARK 3 S21: -0.3738 S22: 0.1835 S23: 0.0135 REMARK 3 S31: -1.2245 S32: -0.1075 S33: 0.4958 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.7683 0.6855 21.7832 REMARK 3 T TENSOR REMARK 3 T11: 0.2587 T22: 0.2152 REMARK 3 T33: 0.2490 T12: 0.0472 REMARK 3 T13: -0.0248 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 6.3677 L22: 3.5718 REMARK 3 L33: 7.6106 L12: -4.5680 REMARK 3 L13: 3.9936 L23: -4.0389 REMARK 3 S TENSOR REMARK 3 S11: -0.4435 S12: -0.5429 S13: -0.1324 REMARK 3 S21: 0.2355 S22: 0.4798 S23: -0.3046 REMARK 3 S31: 0.2790 S32: -0.0242 S33: -0.0271 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6079 1.6821 17.8163 REMARK 3 T TENSOR REMARK 3 T11: 0.3004 T22: 0.4314 REMARK 3 T33: 0.3369 T12: 0.0535 REMARK 3 T13: 0.0505 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 2.2784 L22: 5.0057 REMARK 3 L33: 4.6708 L12: -3.2111 REMARK 3 L13: 3.1094 L23: -4.8567 REMARK 3 S TENSOR REMARK 3 S11: 0.1652 S12: 0.7197 S13: 0.0769 REMARK 3 S21: -0.0578 S22: -0.4191 S23: -0.1568 REMARK 3 S31: -0.4607 S32: 1.0862 S33: 0.3207 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 95 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7910 4.0268 8.6298 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.1786 REMARK 3 T33: 0.1589 T12: 0.0083 REMARK 3 T13: -0.0011 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 6.6694 L22: 5.5241 REMARK 3 L33: 7.9644 L12: -2.0032 REMARK 3 L13: 0.9644 L23: 0.4079 REMARK 3 S TENSOR REMARK 3 S11: 0.1927 S12: 0.4528 S13: 0.1091 REMARK 3 S21: 0.0470 S22: -0.1331 S23: -0.2502 REMARK 3 S31: 0.1562 S32: 0.5839 S33: -0.0737 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 117 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5187 4.3412 16.3480 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.3274 REMARK 3 T33: 0.1827 T12: -0.0403 REMARK 3 T13: -0.0240 T23: 0.0480 REMARK 3 L TENSOR REMARK 3 L11: 2.3048 L22: 6.8318 REMARK 3 L33: 9.4441 L12: -0.2982 REMARK 3 L13: -1.6901 L23: 4.1967 REMARK 3 S TENSOR REMARK 3 S11: -0.2257 S12: -0.0735 S13: -0.1376 REMARK 3 S21: -0.0434 S22: 0.2372 S23: 0.2392 REMARK 3 S31: 0.1621 S32: -1.0644 S33: 0.1267 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2953 15.9425 30.1398 REMARK 3 T TENSOR REMARK 3 T11: 0.3596 T22: 0.2921 REMARK 3 T33: 0.1904 T12: -0.0029 REMARK 3 T13: 0.0372 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 8.0085 L22: 5.2110 REMARK 3 L33: 2.5377 L12: 1.5548 REMARK 3 L13: 1.6899 L23: 2.1000 REMARK 3 S TENSOR REMARK 3 S11: 0.0467 S12: 0.4665 S13: 0.9027 REMARK 3 S21: 0.1011 S22: -0.1095 S23: 0.2143 REMARK 3 S31: -0.9058 S32: 0.2401 S33: -0.1524 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 132 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.2494 6.8491 21.7239 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.2645 REMARK 3 T33: 0.1670 T12: -0.0346 REMARK 3 T13: 0.0176 T23: 0.0402 REMARK 3 L TENSOR REMARK 3 L11: 3.0234 L22: 6.3993 REMARK 3 L33: 2.8809 L12: -0.0045 REMARK 3 L13: -0.4668 L23: -0.1461 REMARK 3 S TENSOR REMARK 3 S11: -0.1201 S12: -0.0316 S13: -0.1193 REMARK 3 S21: -0.6050 S22: 0.0237 S23: 0.4268 REMARK 3 S31: -0.2528 S32: -0.7655 S33: 0.1555 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1797 -9.5924 15.9740 REMARK 3 T TENSOR REMARK 3 T11: 0.9686 T22: 0.2852 REMARK 3 T33: 0.5705 T12: 0.0136 REMARK 3 T13: -0.1329 T23: -0.0349 REMARK 3 L TENSOR REMARK 3 L11: 9.9045 L22: 6.8272 REMARK 3 L33: 9.0886 L12: 0.6879 REMARK 3 L13: -0.4552 L23: 1.7122 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: 0.1077 S13: -1.1890 REMARK 3 S21: -0.3758 S22: -0.2614 S23: 1.0190 REMARK 3 S31: 1.2678 S32: 0.1563 S33: 0.2339 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YWN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978720 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3PFT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 MG/ML MYAVA.00250.A.A1.PS00591 REMARK 280 AGAINST JCSG A3 (OPTIMIZATION: 22% PEG3350, 200 MM AMMONIUM REMARK 280 CITRATE DIBASIC), CRYOPROTECTANT: 20% ETHYLENE GLYCOL, TRAY REMARK 280 247348, PUCK WUF3-10, PH 7.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 114.79500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.13000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.39750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.13000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 172.19250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.13000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.13000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 57.39750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.13000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.13000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 172.19250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 114.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 ASN A 5 REMARK 465 ASN A 6 REMARK 465 LYS A 7 REMARK 465 ALA A 146 REMARK 465 ASN A 147 REMARK 465 VAL A 148 REMARK 465 ALA A 149 REMARK 465 PRO A 150 REMARK 465 ILE A 151 REMARK 465 VAL A 152 REMARK 465 PHE A 153 REMARK 465 HIS A 154 REMARK 465 ARG A 155 REMARK 465 SER A 156 REMARK 465 GLY A 157 REMARK 465 PHE A 158 REMARK 465 ARG A 159 REMARK 465 ARG A 160 REMARK 465 LEU A 161 REMARK 465 GLY A 162 REMARK 465 ALA A 163 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 ASN B 5 REMARK 465 ASN B 6 REMARK 465 LYS B 7 REMARK 465 LEU B 8 REMARK 465 THR B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 PHE B 153 REMARK 465 HIS B 154 REMARK 465 ARG B 155 REMARK 465 SER B 156 REMARK 465 GLY B 157 REMARK 465 PHE B 158 REMARK 465 ARG B 159 REMARK 465 ARG B 160 REMARK 465 LEU B 161 REMARK 465 GLY B 162 REMARK 465 ALA B 163 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 19 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 141 CG CD OE1 OE2 REMARK 470 SER B 12 OG REMARK 470 LEU B 13 CG CD1 CD2 REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 15 CG CD OE1 OE2 REMARK 470 HIS B 19 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 96 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 147 CG OD1 ND2 REMARK 470 VAL B 152 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 41 -169.89 -117.69 REMARK 500 SER A 41 -168.52 -119.17 REMARK 500 ASP A 95 52.49 -106.75 REMARK 500 ASP B 95 47.42 -101.89 REMARK 500 ALA B 129 81.66 -153.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYAVA.00250.A RELATED DB: TARGETTRACK DBREF 4YWN A 3 163 UNP A0QM95 A0QM95_MYCA1 2 162 DBREF 4YWN B 3 163 UNP A0QM95 A0QM95_MYCA1 2 162 SEQADV 4YWN GLY A -1 UNP A0QM95 EXPRESSION TAG SEQADV 4YWN SER A 0 UNP A0QM95 EXPRESSION TAG SEQADV 4YWN MET A 1 UNP A0QM95 EXPRESSION TAG SEQADV 4YWN VAL A 2 UNP A0QM95 EXPRESSION TAG SEQADV 4YWN GLY B -1 UNP A0QM95 EXPRESSION TAG SEQADV 4YWN SER B 0 UNP A0QM95 EXPRESSION TAG SEQADV 4YWN MET B 1 UNP A0QM95 EXPRESSION TAG SEQADV 4YWN VAL B 2 UNP A0QM95 EXPRESSION TAG SEQRES 1 A 165 GLY SER MET VAL ASN SER ASN ASN LYS LEU THR ALA SER SEQRES 2 A 165 SER LEU ARG GLU ALA PHE GLY HIS PHE PRO SER GLY VAL SEQRES 3 A 165 VAL ALA ILE ALA ALA GLU VAL ASN GLY THR LEU GLU GLY SEQRES 4 A 165 LEU ALA ALA SER THR PHE VAL PRO VAL SER LEU ASP PRO SEQRES 5 A 165 PRO LEU VAL SER PHE CYS VAL GLN ASN THR SER THR THR SEQRES 6 A 165 TRP PRO LYS LEU LYS ASP ARG PRO MET LEU GLY ILE SER SEQRES 7 A 165 VAL LEU GLY GLU GLU HIS ASP GLU ALA ALA ARG THR LEU SEQRES 8 A 165 ALA ALA LYS THR GLY ASP ARG PHE ALA GLY LEU GLU THR SEQRES 9 A 165 VAL SER ARG PRO THR GLY ALA VAL PHE ILE LYS GLY THR SEQRES 10 A 165 ALA LEU TRP LEU GLU SER ALA VAL GLU GLN LEU ILE PRO SEQRES 11 A 165 ALA GLY ASP HIS THR ILE VAL VAL LEU ARG VAL ASN GLU SEQRES 12 A 165 VAL THR VAL ASP ALA ASN VAL ALA PRO ILE VAL PHE HIS SEQRES 13 A 165 ARG SER GLY PHE ARG ARG LEU GLY ALA SEQRES 1 B 165 GLY SER MET VAL ASN SER ASN ASN LYS LEU THR ALA SER SEQRES 2 B 165 SER LEU ARG GLU ALA PHE GLY HIS PHE PRO SER GLY VAL SEQRES 3 B 165 VAL ALA ILE ALA ALA GLU VAL ASN GLY THR LEU GLU GLY SEQRES 4 B 165 LEU ALA ALA SER THR PHE VAL PRO VAL SER LEU ASP PRO SEQRES 5 B 165 PRO LEU VAL SER PHE CYS VAL GLN ASN THR SER THR THR SEQRES 6 B 165 TRP PRO LYS LEU LYS ASP ARG PRO MET LEU GLY ILE SER SEQRES 7 B 165 VAL LEU GLY GLU GLU HIS ASP GLU ALA ALA ARG THR LEU SEQRES 8 B 165 ALA ALA LYS THR GLY ASP ARG PHE ALA GLY LEU GLU THR SEQRES 9 B 165 VAL SER ARG PRO THR GLY ALA VAL PHE ILE LYS GLY THR SEQRES 10 B 165 ALA LEU TRP LEU GLU SER ALA VAL GLU GLN LEU ILE PRO SEQRES 11 B 165 ALA GLY ASP HIS THR ILE VAL VAL LEU ARG VAL ASN GLU SEQRES 12 B 165 VAL THR VAL ASP ALA ASN VAL ALA PRO ILE VAL PHE HIS SEQRES 13 B 165 ARG SER GLY PHE ARG ARG LEU GLY ALA HET FLC A 300 13 HETNAM FLC CITRATE ANION FORMUL 3 FLC C6 H5 O7 3- FORMUL 4 HOH *124(H2 O) HELIX 1 AA1 SER A 12 PHE A 17 1 6 HELIX 2 AA2 THR A 63 LYS A 68 1 6 HELIX 3 AA3 ASP A 83 ASP A 95 1 13 HELIX 4 AA4 LEU B 13 PHE B 17 1 5 HELIX 5 AA5 THR B 63 LYS B 68 1 6 HELIX 6 AA6 ASP B 83 ASP B 95 1 13 SHEET 1 AA1 8 THR A 9 SER A 11 0 SHEET 2 AA1 8 HIS B 132 VAL B 144 -1 O VAL B 144 N THR A 9 SHEET 3 AA1 8 LEU B 117 ALA B 129 -1 N ILE B 127 O ILE B 134 SHEET 4 AA1 8 LEU B 73 GLU B 80 -1 N LEU B 73 O SER B 121 SHEET 5 AA1 8 GLY B 23 VAL B 31 -1 N ALA B 28 O GLY B 74 SHEET 6 AA1 8 THR B 34 SER B 47 -1 O LEU B 38 N ILE B 27 SHEET 7 AA1 8 LEU B 52 GLN B 58 -1 O CYS B 56 N SER B 41 SHEET 8 AA1 8 HIS B 132 VAL B 144 -1 O VAL B 135 N PHE B 55 SHEET 1 AA2 7 GLY A 23 VAL A 31 0 SHEET 2 AA2 7 THR A 34 SER A 47 -1 O LEU A 38 N ILE A 27 SHEET 3 AA2 7 LEU A 52 GLN A 58 -1 O SER A 54 N VAL A 44 SHEET 4 AA2 7 HIS A 132 VAL A 144 -1 O VAL A 135 N PHE A 55 SHEET 5 AA2 7 LEU A 117 ALA A 129 -1 N GLU A 120 O ASN A 140 SHEET 6 AA2 7 LEU A 73 GLU A 80 -1 N LEU A 73 O SER A 121 SHEET 7 AA2 7 GLY A 23 VAL A 31 -1 N ALA A 26 O SER A 76 SHEET 1 AA3 2 THR A 102 SER A 104 0 SHEET 2 AA3 2 VAL A 110 ILE A 112 -1 O PHE A 111 N VAL A 103 SHEET 1 AA4 2 THR B 102 SER B 104 0 SHEET 2 AA4 2 VAL B 110 ILE B 112 -1 O PHE B 111 N VAL B 103 CISPEP 1 ASP A 49 PRO A 50 0 4.24 CISPEP 2 ASP B 49 PRO B 50 0 1.91 SITE 1 AC1 10 LEU A 8 GLU A 101 ARG A 105 LYS A 113 SITE 2 AC1 10 HOH A 410 HOH A 420 HOH A 423 GLU B 101 SITE 3 AC1 10 ARG B 105 LYS B 113 CRYST1 50.260 50.260 229.590 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019897 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004356 0.00000