HEADER RNA BINDING PROTEIN 20-MAR-15 4YWQ TITLE CRYSTAL STRUCTURE OF THE ROQ DOMAIN OF HUMAN ROQUIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROQUIN-1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ROQ DOMAIN (UNP RESIDUES 159-328); COMPND 5 SYNONYM: ROQUIN, RING FINGER AND C3H ZINC FINGER PROTEIN 1, RING COMPND 6 FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1, RING COMPND 7 FINGER PROTEIN 198; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RC3H1, KIAA2025, RNF198; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS ROQ, RNA BINDING DOMAIN, E3 UBIQUITIN LIGASE, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSCRIPTION, RNA BINDING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,Q.ZHANG,Y.LI,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 Y.TONG,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 1 22-APR-15 4YWQ 0 JRNL AUTH Q.ZHANG,A.DONG,Y.LI,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,Y.TONG JRNL TITL CRYSTAL STRUCTURE OF THE ROQ DOMAIN OF HUMAN ROQUIN-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 32036 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.600 REMARK 3 FREE R VALUE TEST SET COUNT : 849 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2216 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3850 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2359 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.94000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.625 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2554 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2534 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3473 ; 1.388 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5825 ; 0.916 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 342 ; 5.204 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;34.105 ;23.214 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;12.881 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;15.429 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 401 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2905 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 595 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1262 ; 1.167 ; 2.069 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1260 ; 1.166 ; 2.069 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1588 ; 1.891 ; 3.090 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YWQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.72900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN MIXED WITH ELASTASE AT 1:1000 REMARK 280 (W/W) RATIO RIGHT BEFORE CRYSTALLIZATION, 25% PEG8000, 0.2 M REMARK 280 SODIUM CHLORIDE, 0.1 M HEPES, PH 7.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 85.60250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 85.60250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 GLY A 162 REMARK 465 GLU A 163 REMARK 465 ARG A 164 REMARK 465 THR A 165 REMARK 465 VAL A 166 REMARK 465 THR A 167 REMARK 465 GLU A 168 REMARK 465 LEU A 169 REMARK 465 ILE A 170 REMARK 465 LEU A 171 REMARK 465 GLN A 172 REMARK 465 HIS A 173 REMARK 465 GLN A 174 REMARK 465 ASN A 175 REMARK 465 PRO A 176 REMARK 465 ARG B 159 REMARK 465 SER B 160 REMARK 465 LEU B 161 REMARK 465 GLY B 162 REMARK 465 GLU B 163 REMARK 465 ARG B 164 REMARK 465 THR B 165 REMARK 465 VAL B 166 REMARK 465 THR B 167 REMARK 465 GLU B 168 REMARK 465 LEU B 169 REMARK 465 ILE B 170 REMARK 465 LEU B 171 REMARK 465 GLN B 172 REMARK 465 HIS B 173 REMARK 465 GLN B 174 REMARK 465 ASN B 175 REMARK 465 PRO B 176 REMARK 465 GLN B 177 REMARK 465 GLU B 262 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 177 N CB CG CD OE1 NE2 REMARK 470 GLN A 178 CG CD OE1 NE2 REMARK 470 GLN A 236 CD OE1 NE2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 ARG A 297 CD NE CZ NH1 NH2 REMARK 470 LYS A 323 NZ REMARK 470 GLN B 178 CG CD OE1 NE2 REMARK 470 LYS B 205 NZ REMARK 470 LYS B 256 CD CE NZ REMARK 470 LYS B 259 CD CE NZ REMARK 470 ARG B 297 CD NE CZ NH1 NH2 REMARK 470 LYS B 314 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 253 NZ LYS B 323 4646 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 260 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 261 -115.65 43.11 REMARK 500 ARG B 274 30.28 -91.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 277 OE2 REMARK 620 2 HIS A 316 ND1 108.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 DBREF 4YWQ A 159 328 UNP Q5TC82 RC3H1_HUMAN 159 328 DBREF 4YWQ B 159 328 UNP Q5TC82 RC3H1_HUMAN 159 328 SEQRES 1 A 170 ARG SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU SEQRES 2 A 170 GLN HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP SEQRES 3 A 170 ALA ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO SEQRES 4 A 170 ALA MSE GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA SEQRES 5 A 170 LEU GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL SEQRES 6 A 170 LEU PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN SEQRES 7 A 170 ALA SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU SEQRES 8 A 170 TYR ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU SEQRES 9 A 170 ASP SER SER LEU MSE GLN LEU LYS GLU GLU PHE ARG THR SEQRES 10 A 170 TYR GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL SEQRES 11 A 170 GLN ILE ALA MSE GLU ALA GLY LEU ARG ILE ALA PRO ASP SEQRES 12 A 170 GLN TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SEQRES 13 A 170 SER HIS MSE GLN SER ILE ILE ASP LYS LEU GLN THR PRO SEQRES 14 A 170 ALA SEQRES 1 B 170 ARG SER LEU GLY GLU ARG THR VAL THR GLU LEU ILE LEU SEQRES 2 B 170 GLN HIS GLN ASN PRO GLN GLN LEU SER SER ASN LEU TRP SEQRES 3 B 170 ALA ALA VAL ARG ALA ARG GLY CYS GLN PHE LEU GLY PRO SEQRES 4 B 170 ALA MSE GLN GLU GLU ALA LEU LYS LEU VAL LEU LEU ALA SEQRES 5 B 170 LEU GLU ASP GLY SER ALA LEU SER ARG LYS VAL LEU VAL SEQRES 6 B 170 LEU PHE VAL VAL GLN ARG LEU GLU PRO ARG PHE PRO GLN SEQRES 7 B 170 ALA SER LYS THR SER ILE GLY HIS VAL VAL GLN LEU LEU SEQRES 8 B 170 TYR ARG ALA SER CYS PHE LYS VAL THR LYS ARG ASP GLU SEQRES 9 B 170 ASP SER SER LEU MSE GLN LEU LYS GLU GLU PHE ARG THR SEQRES 10 B 170 TYR GLU ALA LEU ARG ARG GLU HIS ASP SER GLN ILE VAL SEQRES 11 B 170 GLN ILE ALA MSE GLU ALA GLY LEU ARG ILE ALA PRO ASP SEQRES 12 B 170 GLN TRP SER SER LEU LEU TYR GLY ASP GLN SER HIS LYS SEQRES 13 B 170 SER HIS MSE GLN SER ILE ILE ASP LYS LEU GLN THR PRO SEQRES 14 B 170 ALA MODRES 4YWQ MSE A 199 MET MODIFIED RESIDUE MODRES 4YWQ MSE A 267 MET MODIFIED RESIDUE MODRES 4YWQ MSE A 292 MET MODIFIED RESIDUE MODRES 4YWQ MSE A 317 MET MODIFIED RESIDUE MODRES 4YWQ MSE B 199 MET MODIFIED RESIDUE MODRES 4YWQ MSE B 267 MET MODIFIED RESIDUE MODRES 4YWQ MSE B 292 MET MODIFIED RESIDUE MODRES 4YWQ MSE B 317 MET MODIFIED RESIDUE HET MSE A 199 8 HET MSE A 267 13 HET MSE A 292 8 HET MSE A 317 8 HET MSE B 199 8 HET MSE B 267 8 HET MSE B 292 8 HET MSE B 317 8 HET ZN A 401 1 HET GOL A 402 6 HET EDO A 403 4 HET CL A 404 1 HET CL A 405 1 HET CL A 406 1 HET CL A 407 1 HET CL A 408 1 HET UNX A 409 1 HET UNX A 410 1 HET UNX A 411 1 HET UNX A 412 1 HET UNX A 413 1 HET EDO B 401 4 HET UNX B 402 1 HET UNX B 403 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM UNX UNKNOWN ATOM OR ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 ZN ZN 2+ FORMUL 4 GOL C3 H8 O3 FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 CL 5(CL 1-) FORMUL 11 UNX 7(X) FORMUL 19 HOH *182(H2 O) HELIX 1 AA1 GLN A 177 ARG A 190 1 14 HELIX 2 AA2 GLY A 196 GLU A 212 1 17 HELIX 3 AA3 ARG A 219 PHE A 234 1 16 HELIX 4 AA4 SER A 238 ALA A 252 1 15 HELIX 5 AA5 GLU A 271 ARG A 274 5 4 HELIX 6 AA6 THR A 275 ALA A 294 1 20 HELIX 7 AA7 ALA A 299 GLY A 309 1 11 HELIX 8 AA8 HIS A 313 THR A 326 1 14 HELIX 9 AA9 LEU B 179 ARG B 190 1 12 HELIX 10 AB1 GLY B 196 GLU B 212 1 17 HELIX 11 AB2 ARG B 219 GLU B 231 1 13 HELIX 12 AB3 SER B 238 ALA B 252 1 15 HELIX 13 AB4 GLU B 271 ARG B 274 5 4 HELIX 14 AB5 THR B 275 ALA B 294 1 20 HELIX 15 AB6 ALA B 299 GLY B 309 1 11 HELIX 16 AB7 HIS B 313 LEU B 324 1 12 SHEET 1 AA1 3 LEU A 217 SER A 218 0 SHEET 2 AA1 3 LEU A 266 LEU A 269 -1 O MSE A 267 N LEU A 217 SHEET 3 AA1 3 PHE A 255 THR A 258 -1 N LYS A 256 O GLN A 268 SHEET 1 AA2 3 LEU B 217 SER B 218 0 SHEET 2 AA2 3 LEU B 266 LEU B 269 -1 O MSE B 267 N LEU B 217 SHEET 3 AA2 3 PHE B 255 THR B 258 -1 N LYS B 256 O GLN B 268 LINK C ALA A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N GLN A 200 1555 1555 1.34 LINK C LEU A 266 N MSE A 267 1555 1555 1.33 LINK C MSE A 267 N GLN A 268 1555 1555 1.33 LINK OE2 GLU A 277 ZN ZN A 401 1555 1555 2.09 LINK C ALA A 291 N MSE A 292 1555 1555 1.33 LINK C MSE A 292 N GLU A 293 1555 1555 1.34 LINK C HIS A 316 N MSE A 317 1555 1555 1.34 LINK ND1 HIS A 316 ZN ZN A 401 1555 1555 2.18 LINK C MSE A 317 N GLN A 318 1555 1555 1.34 LINK C ALA B 198 N MSE B 199 1555 1555 1.33 LINK C MSE B 199 N GLN B 200 1555 1555 1.33 LINK C LEU B 266 N MSE B 267 1555 1555 1.33 LINK C MSE B 267 N GLN B 268 1555 1555 1.33 LINK C ALA B 291 N MSE B 292 1555 1555 1.33 LINK C MSE B 292 N GLU B 293 1555 1555 1.34 LINK C HIS B 316 N MSE B 317 1555 1555 1.33 LINK C MSE B 317 N GLN B 318 1555 1555 1.33 SITE 1 AC1 4 GLU A 277 HIS A 316 CL A 404 CL A 405 SITE 1 AC2 3 TYR A 250 ARG A 251 SER A 253 SITE 1 AC3 3 LEU A 296 ILE A 298 TRP A 303 SITE 1 AC4 5 ALA A 185 GLU A 277 ARG A 281 HIS A 316 SITE 2 AC4 5 ZN A 401 SITE 1 AC5 2 GLU A 277 ZN A 401 SITE 1 AC6 4 ARG A 188 TYR A 276 GLU A 277 HOH A 585 SITE 1 AC7 4 SER A 312 LYS A 314 SER A 315 CL A 408 SITE 1 AC8 6 SER A 312 HIS A 313 SER A 315 HIS A 316 SITE 2 AC8 6 CL A 407 HOH A 508 SITE 1 AC9 6 TYR B 250 SER B 253 CYS B 254 PHE B 255 SITE 2 AC9 6 LYS B 323 HOH B 509 CRYST1 171.205 29.560 59.926 90.00 101.55 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005841 0.000000 0.001193 0.00000 SCALE2 0.000000 0.033830 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017032 0.00000