HEADER TRANSFERASE 21-MAR-15 4YWZ TITLE CRYSTAL STRUCTURE OF THE EXTRACELLULAR RECEPTOR DOMAIN OF THE TITLE 2 ESSENTIAL SENSOR KINASE WALK FROM STAPHYLOCOCCUS AUREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN KINASE WALK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: EXTRACELLULAR RECEPTOR DOMAIN (UNP RESIDUES 34-182); COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: WALK, YYCG, SAB0019; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EXTRACELLULAR RECEPTOR, KINASE, ESSENTIAL, STAPHYLOCOCCUS AUREUS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Q.JI,Z.WAWRZAK,C.HE REVDAT 3 11-DEC-19 4YWZ 1 REMARK REVDAT 2 27-SEP-17 4YWZ 1 REMARK REVDAT 1 30-MAR-16 4YWZ 0 JRNL AUTH Q.JI,P.J.CHEN,G.QIN,X.DENG,Z.HAO,Z.WAWRZAK,W.S.YEO, JRNL AUTH 2 J.W.QUANG,H.CHO,G.Z.LUO,X.WENG,Q.YOU,C.H.LUAN,X.YANG,T.BAE, JRNL AUTH 3 K.YU,H.JIANG,C.HE JRNL TITL STRUCTURE AND MECHANISM OF THE ESSENTIAL TWO-COMPONENT JRNL TITL 2 SIGNAL-TRANSDUCTION SYSTEM WALKR IN STAPHYLOCOCCUS AUREUS. JRNL REF NAT COMMUN V. 7 11000 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 26987594 JRNL DOI 10.1038/NCOMMS11000 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 41930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2124 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3151 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 386 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.850 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2387 ; 0.024 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2366 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3208 ; 2.205 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5444 ; 0.972 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 290 ; 6.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;38.508 ;27.280 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 479 ;14.864 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;18.844 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 363 ; 0.138 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2736 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 522 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1169 ; 2.880 ; 2.573 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1168 ; 2.867 ; 2.571 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1456 ; 4.107 ; 3.842 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1457 ; 4.107 ; 3.843 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1218 ; 4.752 ; 3.143 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1219 ; 4.750 ; 3.144 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1753 ; 6.953 ; 4.465 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3100 ; 9.013 ;23.415 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2836 ; 8.629 ;21.656 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4YWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44089 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE DIBASIC, 20% REMARK 280 W/V POLYETHYLENE GLYCOL 3350, PH 5.1, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.66133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.83067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 ASN A 5 REMARK 465 SER B 1 REMARK 465 ASN B 2 REMARK 465 ALA B 3 REMARK 465 THR B 4 REMARK 465 ASN B 5 REMARK 465 ASN B 41 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 227 O HOH A 351 1.70 REMARK 500 O HOH A 329 O HOH A 351 1.78 REMARK 500 O HOH B 207 O HOH B 279 1.89 REMARK 500 O HOH B 225 O HOH B 343 1.89 REMARK 500 O HOH A 201 O HOH A 321 1.90 REMARK 500 O HOH A 266 O HOH A 370 2.06 REMARK 500 O HOH A 288 O HOH A 296 2.08 REMARK 500 NE2 GLN A 69 O HOH A 201 2.13 REMARK 500 O HOH B 269 O HOH B 319 2.14 REMARK 500 O HOH B 371 O HOH B 375 2.15 REMARK 500 NH2 ARG A 116 O HOH A 202 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 301 O HOH B 352 2665 2.02 REMARK 500 O HOH A 387 O HOH B 286 3675 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 27 CD GLU A 27 OE2 0.084 REMARK 500 GLU B 31 CD GLU B 31 OE2 0.074 REMARK 500 GLU B 58 CD GLU B 58 OE2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 50 CB - CG - CD1 ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 116 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 142 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 37 -54.45 -149.44 REMARK 500 SER B 39 -175.38 -66.64 REMARK 500 ASN B 84 -0.52 72.92 REMARK 500 ASP B 127 -127.44 58.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 400 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B 386 DISTANCE = 5.96 ANGSTROMS DBREF 4YWZ A 4 152 UNP Q2YUQ2 WALK_STAAB 34 182 DBREF 4YWZ B 4 152 UNP Q2YUQ2 WALK_STAAB 34 182 SEQADV 4YWZ SER A 1 UNP Q2YUQ2 EXPRESSION TAG SEQADV 4YWZ ASN A 2 UNP Q2YUQ2 EXPRESSION TAG SEQADV 4YWZ ALA A 3 UNP Q2YUQ2 EXPRESSION TAG SEQADV 4YWZ MSE A 56 UNP Q2YUQ2 ARG 86 ENGINEERED MUTATION SEQADV 4YWZ SER B 1 UNP Q2YUQ2 EXPRESSION TAG SEQADV 4YWZ ASN B 2 UNP Q2YUQ2 EXPRESSION TAG SEQADV 4YWZ ALA B 3 UNP Q2YUQ2 EXPRESSION TAG SEQADV 4YWZ MSE B 56 UNP Q2YUQ2 ARG 86 ENGINEERED MUTATION SEQRES 1 A 152 SER ASN ALA THR ASN ASN LEU GLU LYS GLU LEU LEU ASP SEQRES 2 A 152 ASN PHE LYS LYS ASN ILE THR GLN TYR ALA LYS GLN LEU SEQRES 3 A 152 GLU ILE SER ILE GLU LYS VAL TYR ASP GLU LYS GLY SER SEQRES 4 A 152 VAL ASN ALA GLN LYS ASP ILE GLN ASN LEU LEU SER GLU SEQRES 5 A 152 TYR ALA ASN MSE GLN GLU ILE GLY GLU ILE ARG PHE ILE SEQRES 6 A 152 ASP LYS ASP GLN ILE ILE ILE ALA THR THR LYS GLN SER SEQRES 7 A 152 ASN ARG SER LEU ILE ASN GLN LYS ALA ASN ASP SER SER SEQRES 8 A 152 VAL GLN LYS ALA LEU SER LEU GLY GLN SER ASN ASP HIS SEQRES 9 A 152 LEU ILE LEU LYS ASP TYR GLY GLY GLY LYS ASP ARG VAL SEQRES 10 A 152 TRP VAL TYR ASN ILE PRO VAL LYS VAL ASP LYS LYS VAL SEQRES 11 A 152 ILE GLY ASN ILE TYR ILE GLU SER LYS ILE ASN ASP VAL SEQRES 12 A 152 TYR ASN GLN LEU ASN ASN ILE ASN GLN SEQRES 1 B 152 SER ASN ALA THR ASN ASN LEU GLU LYS GLU LEU LEU ASP SEQRES 2 B 152 ASN PHE LYS LYS ASN ILE THR GLN TYR ALA LYS GLN LEU SEQRES 3 B 152 GLU ILE SER ILE GLU LYS VAL TYR ASP GLU LYS GLY SER SEQRES 4 B 152 VAL ASN ALA GLN LYS ASP ILE GLN ASN LEU LEU SER GLU SEQRES 5 B 152 TYR ALA ASN MSE GLN GLU ILE GLY GLU ILE ARG PHE ILE SEQRES 6 B 152 ASP LYS ASP GLN ILE ILE ILE ALA THR THR LYS GLN SER SEQRES 7 B 152 ASN ARG SER LEU ILE ASN GLN LYS ALA ASN ASP SER SER SEQRES 8 B 152 VAL GLN LYS ALA LEU SER LEU GLY GLN SER ASN ASP HIS SEQRES 9 B 152 LEU ILE LEU LYS ASP TYR GLY GLY GLY LYS ASP ARG VAL SEQRES 10 B 152 TRP VAL TYR ASN ILE PRO VAL LYS VAL ASP LYS LYS VAL SEQRES 11 B 152 ILE GLY ASN ILE TYR ILE GLU SER LYS ILE ASN ASP VAL SEQRES 12 B 152 TYR ASN GLN LEU ASN ASN ILE ASN GLN HET MSE A 56 8 HET MSE B 56 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 HOH *386(H2 O) HELIX 1 AA1 ASN A 6 GLY A 38 1 33 HELIX 2 AA2 GLY A 38 GLN A 43 1 6 HELIX 3 AA3 ASP A 45 ASN A 55 1 11 HELIX 4 AA4 LYS A 76 ILE A 83 5 8 HELIX 5 AA5 ASP A 89 GLY A 99 1 11 HELIX 6 AA6 ILE A 140 ILE A 150 1 11 HELIX 7 AA7 LEU B 7 GLU B 36 1 30 HELIX 8 AA8 GLN B 43 ASN B 55 1 13 HELIX 9 AA9 LYS B 76 ILE B 83 5 8 HELIX 10 AB1 ASP B 89 GLY B 99 1 11 HELIX 11 AB2 ILE B 140 ILE B 150 1 11 SHEET 1 AA1 5 ILE A 71 THR A 74 0 SHEET 2 AA1 5 ILE A 59 ASP A 66 -1 N PHE A 64 O ILE A 72 SHEET 3 AA1 5 LYS A 129 SER A 138 -1 O GLU A 137 N GLY A 60 SHEET 4 AA1 5 LYS A 114 VAL A 126 -1 N ILE A 122 O ILE A 134 SHEET 5 AA1 5 ASN A 102 ASP A 109 -1 N HIS A 104 O VAL A 119 SHEET 1 AA2 5 ILE B 71 THR B 74 0 SHEET 2 AA2 5 ILE B 59 ASP B 66 -1 N PHE B 64 O ILE B 72 SHEET 3 AA2 5 LYS B 129 SER B 138 -1 O TYR B 135 N ARG B 63 SHEET 4 AA2 5 LYS B 114 VAL B 126 -1 N ILE B 122 O ILE B 134 SHEET 5 AA2 5 ASN B 102 ASP B 109 -1 N HIS B 104 O VAL B 119 LINK C ASN A 55 N MSE A 56 1555 1555 1.34 LINK C MSE A 56 N GLN A 57 1555 1555 1.34 LINK C ASN B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N GLN B 57 1555 1555 1.33 CISPEP 1 GLY B 38 SER B 39 0 2.85 CISPEP 2 SER B 39 VAL B 40 0 6.74 CRYST1 66.701 66.701 80.492 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014992 0.008656 0.000000 0.00000 SCALE2 0.000000 0.017312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012424 0.00000