HEADER DNA BINDING PROTEIN 23-MAR-15 4YXJ TITLE STRUCTURE OF THERMOTOGA MARITIMA DISA IN COMPLEX WITH APCPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA INTEGRITY SCANNING PROTEIN DISA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYCLIC DI-AMP SYNTHASE,C-DI-AMP SYNTHASE,DIADENYLATE COMPND 5 CYCLASE; COMPND 6 EC: 2.7.7.85; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: DISA, TM_0200; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA KEYWDS DNA BINDING PROTEIN, C-DI-AMP SYNTHESIS, DAC DOMAIN, INHIBITOR, PRE- KEYWDS 2 REACTION STATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MUELLER,T.DEIMLING,K.-P.HOPFNER,G.WITTE REVDAT 5 10-JAN-24 4YXJ 1 REMARK REVDAT 4 06-SEP-17 4YXJ 1 REMARK REVDAT 3 05-AUG-15 4YXJ 1 JRNL REVDAT 2 10-JUN-15 4YXJ 1 JRNL REVDAT 1 03-JUN-15 4YXJ 0 JRNL AUTH M.MULLER,T.DEIMLING,K.P.HOPFNER,G.WITTE JRNL TITL STRUCTURAL ANALYSIS OF THE DIADENYLATE CYCLASE REACTION OF JRNL TITL 2 DNA-INTEGRITY SCANNING PROTEIN A (DISA) AND ITS INHIBITION JRNL TITL 3 BY 3'-DATP. JRNL REF BIOCHEM.J. V. 469 367 2015 JRNL REFN ESSN 1470-8728 JRNL PMID 26014055 JRNL DOI 10.1042/BJ20150373 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 32808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 1578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4196 - 5.6641 0.99 3063 140 0.1776 0.2237 REMARK 3 2 5.6641 - 4.4968 1.00 2898 162 0.1605 0.2123 REMARK 3 3 4.4968 - 3.9287 0.99 2863 162 0.1498 0.1767 REMARK 3 4 3.9287 - 3.5696 1.00 2861 140 0.1678 0.2237 REMARK 3 5 3.5696 - 3.3138 1.00 2816 146 0.1940 0.2813 REMARK 3 6 3.3138 - 3.1185 1.00 2836 141 0.2128 0.2717 REMARK 3 7 3.1185 - 2.9623 1.00 2847 125 0.2241 0.2633 REMARK 3 8 2.9623 - 2.8334 1.00 2797 137 0.2308 0.3263 REMARK 3 9 2.8334 - 2.7243 1.00 2789 154 0.2611 0.3358 REMARK 3 10 2.7243 - 2.6303 0.99 2795 138 0.2593 0.3191 REMARK 3 11 2.6303 - 2.5481 0.95 2665 133 0.2674 0.3453 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5732 REMARK 3 ANGLE : 1.125 7760 REMARK 3 CHIRALITY : 0.043 918 REMARK 3 PLANARITY : 0.004 976 REMARK 3 DIHEDRAL : 16.519 2220 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YXJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7-8.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00149 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32830 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3C1Z REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (V/V) MPD, 200MM AMMONIUM ACETATE, REMARK 280 100 MM TRIS-HCL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z REMARK 290 4555 Y+1/2,-X+1/2,Z REMARK 290 5555 -X+1/2,Y+1/2,-Z REMARK 290 6555 X+1/2,-Y+1/2,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 54.12500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.12500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 54.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.12500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.12500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 54.12500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.12500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 34290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 112490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -108.25000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -54.12500 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -54.12500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 54.12500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -54.12500 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 SER A 356 REMARK 465 GLU A 357 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 VAL B 3 REMARK 465 LYS B 4 REMARK 465 SER B 5 REMARK 465 LEU B 6 REMARK 465 SER B 356 REMARK 465 GLU B 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 355 O REMARK 470 THR B 355 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER A 344 OG SER A 348 2.09 REMARK 500 O PHE A 36 O HOH A 501 2.11 REMARK 500 N ASP B 230 O HOH B 501 2.15 REMARK 500 NH2 ARG B 128 O2B APC B 401 2.15 REMARK 500 OH TYR B 142 OE1 GLU B 212 2.18 REMARK 500 N GLN B 279 O HOH B 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OH TYR A 69 NH2 ARG A 129 3445 2.08 REMARK 500 O HOH B 573 O HOH B 580 4545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 54.68 36.79 REMARK 500 LYS A 138 -121.20 45.03 REMARK 500 THR A 261 -69.21 -98.40 REMARK 500 PRO A 265 46.90 -81.84 REMARK 500 LYS A 316 -48.73 72.20 REMARK 500 ASN B 131 43.76 -97.50 REMARK 500 LYS B 138 -117.03 54.62 REMARK 500 THR B 261 -84.20 -116.45 REMARK 500 LYS B 316 -48.23 71.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue APC B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3C1Y RELATED DB: PDB REMARK 900 3C1Y SAME PROTEIN WITH REACTION PRODUCT REMARK 900 RELATED ID: 3C1Z RELATED DB: PDB REMARK 900 SAME PROTEIN LIGAND FREE FORM REMARK 900 RELATED ID: 3C21 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH REACTION PRODUCT REMARK 900 RELATED ID: 3C23 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH NON-REACTIVE LIGAND REMARK 900 RELATED ID: 4YVZ RELATED DB: PDB REMARK 900 SAME PROTEIN WITH NON-REACTIVE LIGAND AND MN2+ - ION DBREF 4YXJ A 1 357 UNP Q9WY43 DISA_THEMA 1 357 DBREF 4YXJ B 1 357 UNP Q9WY43 DISA_THEMA 1 357 SEQADV 4YXJ MET A -19 UNP Q9WY43 INITIATING METHIONINE SEQADV 4YXJ GLY A -18 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ SER A -17 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ SER A -16 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS A -15 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS A -14 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS A -13 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS A -12 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS A -11 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS A -10 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ SER A -9 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ SER A -8 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ GLY A -7 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ LEU A -6 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ VAL A -5 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ PRO A -4 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ ARG A -3 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ GLY A -2 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ SER A -1 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS A 0 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ MET B -19 UNP Q9WY43 INITIATING METHIONINE SEQADV 4YXJ GLY B -18 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ SER B -17 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ SER B -16 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS B -15 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS B -14 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS B -13 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS B -12 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS B -11 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS B -10 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ SER B -9 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ SER B -8 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ GLY B -7 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ LEU B -6 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ VAL B -5 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ PRO B -4 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ ARG B -3 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ GLY B -2 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ SER B -1 UNP Q9WY43 EXPRESSION TAG SEQADV 4YXJ HIS B 0 UNP Q9WY43 EXPRESSION TAG SEQRES 1 A 377 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 377 LEU VAL PRO ARG GLY SER HIS MET GLY VAL LYS SER LEU SEQRES 3 A 377 VAL PRO GLN GLU LEU ILE GLU LYS ILE LYS LEU ILE SER SEQRES 4 A 377 PRO GLY THR GLU LEU ARG LYS ALA LEU ASP ASP ILE ILE SEQRES 5 A 377 ASN ALA ASN PHE GLY ALA LEU ILE PHE LEU VAL ASP ASP SEQRES 6 A 377 PRO LYS LYS TYR GLU ASP VAL ILE GLN GLY GLY PHE TRP SEQRES 7 A 377 LEU ASP THR ASP PHE SER ALA GLU LYS LEU TYR GLU LEU SEQRES 8 A 377 SER LYS MET ASP GLY ALA ILE VAL LEU SER GLU ASP ILE SEQRES 9 A 377 THR LYS ILE TYR TYR ALA ASN VAL HIS LEU VAL PRO ASP SEQRES 10 A 377 PRO THR ILE PRO THR GLY GLU THR GLY THR ARG HIS ARG SEQRES 11 A 377 THR ALA GLU ARG LEU ALA LYS GLN THR GLY LYS VAL VAL SEQRES 12 A 377 ILE ALA VAL SER ARG ARG ARG ASN ILE ILE SER LEU TYR SEQRES 13 A 377 TYR LYS ASN TYR LYS TYR VAL VAL ASN GLN VAL ASP PHE SEQRES 14 A 377 LEU ILE SER LYS VAL THR GLN ALA ILE SER THR LEU GLU SEQRES 15 A 377 LYS TYR LYS ASP ASN PHE ASN LYS LEU LEU SER GLU LEU SEQRES 16 A 377 GLU VAL LEU GLU LEU GLU ASN ARG VAL THR LEU ALA ASP SEQRES 17 A 377 VAL VAL ARG THR LEU ALA LYS GLY PHE GLU LEU LEU ARG SEQRES 18 A 377 ILE VAL GLU GLU ILE ARG PRO TYR ILE VAL GLU LEU GLY SEQRES 19 A 377 GLU GLU GLY ARG LEU ALA ARG MET GLN LEU ARG GLU LEU SEQRES 20 A 377 THR GLU ASP VAL ASP ASP LEU LEU VAL LEU LEU ILE MET SEQRES 21 A 377 ASP TYR SER SER GLU GLU VAL GLU GLU GLU THR ALA GLN SEQRES 22 A 377 ASN ILE LEU GLN ASP PHE ILE THR ARG ARG GLU PRO SER SEQRES 23 A 377 PRO ILE SER ILE SER ARG VAL LEU GLY TYR ASP VAL GLN SEQRES 24 A 377 GLN ALA ALA GLN LEU ASP ASP VAL LEU VAL SER ALA ARG SEQRES 25 A 377 GLY TYR ARG LEU LEU LYS THR VAL ALA ARG ILE PRO LEU SEQRES 26 A 377 SER ILE GLY TYR ASN VAL VAL ARG MET PHE LYS THR LEU SEQRES 27 A 377 ASP GLN ILE SER LYS ALA SER VAL GLU ASP LEU LYS LYS SEQRES 28 A 377 VAL GLU GLY ILE GLY GLU LYS ARG ALA ARG ALA ILE SER SEQRES 29 A 377 GLU SER ILE SER SER LEU LYS HIS ARG LYS THR SER GLU SEQRES 1 B 377 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 377 LEU VAL PRO ARG GLY SER HIS MET GLY VAL LYS SER LEU SEQRES 3 B 377 VAL PRO GLN GLU LEU ILE GLU LYS ILE LYS LEU ILE SER SEQRES 4 B 377 PRO GLY THR GLU LEU ARG LYS ALA LEU ASP ASP ILE ILE SEQRES 5 B 377 ASN ALA ASN PHE GLY ALA LEU ILE PHE LEU VAL ASP ASP SEQRES 6 B 377 PRO LYS LYS TYR GLU ASP VAL ILE GLN GLY GLY PHE TRP SEQRES 7 B 377 LEU ASP THR ASP PHE SER ALA GLU LYS LEU TYR GLU LEU SEQRES 8 B 377 SER LYS MET ASP GLY ALA ILE VAL LEU SER GLU ASP ILE SEQRES 9 B 377 THR LYS ILE TYR TYR ALA ASN VAL HIS LEU VAL PRO ASP SEQRES 10 B 377 PRO THR ILE PRO THR GLY GLU THR GLY THR ARG HIS ARG SEQRES 11 B 377 THR ALA GLU ARG LEU ALA LYS GLN THR GLY LYS VAL VAL SEQRES 12 B 377 ILE ALA VAL SER ARG ARG ARG ASN ILE ILE SER LEU TYR SEQRES 13 B 377 TYR LYS ASN TYR LYS TYR VAL VAL ASN GLN VAL ASP PHE SEQRES 14 B 377 LEU ILE SER LYS VAL THR GLN ALA ILE SER THR LEU GLU SEQRES 15 B 377 LYS TYR LYS ASP ASN PHE ASN LYS LEU LEU SER GLU LEU SEQRES 16 B 377 GLU VAL LEU GLU LEU GLU ASN ARG VAL THR LEU ALA ASP SEQRES 17 B 377 VAL VAL ARG THR LEU ALA LYS GLY PHE GLU LEU LEU ARG SEQRES 18 B 377 ILE VAL GLU GLU ILE ARG PRO TYR ILE VAL GLU LEU GLY SEQRES 19 B 377 GLU GLU GLY ARG LEU ALA ARG MET GLN LEU ARG GLU LEU SEQRES 20 B 377 THR GLU ASP VAL ASP ASP LEU LEU VAL LEU LEU ILE MET SEQRES 21 B 377 ASP TYR SER SER GLU GLU VAL GLU GLU GLU THR ALA GLN SEQRES 22 B 377 ASN ILE LEU GLN ASP PHE ILE THR ARG ARG GLU PRO SER SEQRES 23 B 377 PRO ILE SER ILE SER ARG VAL LEU GLY TYR ASP VAL GLN SEQRES 24 B 377 GLN ALA ALA GLN LEU ASP ASP VAL LEU VAL SER ALA ARG SEQRES 25 B 377 GLY TYR ARG LEU LEU LYS THR VAL ALA ARG ILE PRO LEU SEQRES 26 B 377 SER ILE GLY TYR ASN VAL VAL ARG MET PHE LYS THR LEU SEQRES 27 B 377 ASP GLN ILE SER LYS ALA SER VAL GLU ASP LEU LYS LYS SEQRES 28 B 377 VAL GLU GLY ILE GLY GLU LYS ARG ALA ARG ALA ILE SER SEQRES 29 B 377 GLU SER ILE SER SER LEU LYS HIS ARG LYS THR SER GLU HET APC A 401 31 HET APC B 401 31 HETNAM APC DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER HETSYN APC ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE FORMUL 3 APC 2(C11 H18 N5 O12 P3) FORMUL 5 HOH *186(H2 O) HELIX 1 AA1 PRO A 8 ILE A 18 1 11 HELIX 2 AA2 THR A 22 ASN A 35 1 14 HELIX 3 AA3 ASP A 45 GLU A 50 5 6 HELIX 4 AA4 SER A 64 SER A 72 1 9 HELIX 5 AA5 THR A 105 GLY A 120 1 16 HELIX 6 AA6 GLN A 146 GLU A 181 1 36 HELIX 7 AA7 THR A 185 LEU A 213 1 29 HELIX 8 AA8 GLY A 214 GLU A 216 5 3 HELIX 9 AA9 GLY A 217 GLU A 229 1 13 HELIX 10 AB1 ASP A 230 SER A 243 1 14 HELIX 11 AB2 GLU A 248 THR A 261 1 14 HELIX 12 AB3 SER A 266 LEU A 274 1 9 HELIX 13 AB4 ALA A 282 VAL A 287 5 6 HELIX 14 AB5 GLY A 293 VAL A 300 1 8 HELIX 15 AB6 PRO A 304 LYS A 316 1 13 HELIX 16 AB7 THR A 317 ALA A 324 1 8 HELIX 17 AB8 SER A 325 LYS A 331 1 7 HELIX 18 AB9 GLU A 337 LYS A 354 1 18 HELIX 19 AC1 PRO B 8 ILE B 18 1 11 HELIX 20 AC2 THR B 22 ASN B 35 1 14 HELIX 21 AC3 ASP B 45 GLU B 50 5 6 HELIX 22 AC4 SER B 64 SER B 72 1 9 HELIX 23 AC5 THR B 105 GLY B 120 1 16 HELIX 24 AC6 GLN B 146 GLU B 181 1 36 HELIX 25 AC7 THR B 185 GLY B 214 1 30 HELIX 26 AC8 GLY B 217 GLU B 229 1 13 HELIX 27 AC9 ASP B 230 SER B 243 1 14 HELIX 28 AD1 GLU B 248 THR B 261 1 14 HELIX 29 AD2 SER B 266 LEU B 274 1 9 HELIX 30 AD3 GLN B 280 VAL B 287 5 8 HELIX 31 AD4 GLY B 293 VAL B 300 1 8 HELIX 32 AD5 PRO B 304 LYS B 316 1 13 HELIX 33 AD6 THR B 317 ALA B 324 1 8 HELIX 34 AD7 SER B 325 LYS B 331 1 7 HELIX 35 AD8 GLY B 336 LYS B 354 1 19 SHEET 1 AA1 3 ILE A 53 GLN A 54 0 SHEET 2 AA1 3 LYS A 86 LEU A 94 -1 O HIS A 93 N GLN A 54 SHEET 3 AA1 3 PHE A 57 ASP A 62 -1 N LEU A 59 O TYR A 88 SHEET 1 AA2 7 ILE A 53 GLN A 54 0 SHEET 2 AA2 7 LYS A 86 LEU A 94 -1 O HIS A 93 N GLN A 54 SHEET 3 AA2 7 ALA A 77 SER A 81 -1 N VAL A 79 O TYR A 88 SHEET 4 AA2 7 ALA A 38 VAL A 43 1 N VAL A 43 O LEU A 80 SHEET 5 AA2 7 VAL A 122 VAL A 126 -1 O VAL A 126 N ALA A 38 SHEET 6 AA2 7 ILE A 133 TYR A 137 -1 O SER A 134 N ALA A 125 SHEET 7 AA2 7 TYR A 140 VAL A 144 -1 O TYR A 142 N LEU A 135 SHEET 1 AA3 3 ILE B 53 GLN B 54 0 SHEET 2 AA3 3 LYS B 86 LEU B 94 -1 O HIS B 93 N GLN B 54 SHEET 3 AA3 3 PHE B 57 ASP B 62 -1 N LEU B 59 O TYR B 88 SHEET 1 AA4 7 ILE B 53 GLN B 54 0 SHEET 2 AA4 7 LYS B 86 LEU B 94 -1 O HIS B 93 N GLN B 54 SHEET 3 AA4 7 ALA B 77 SER B 81 -1 N VAL B 79 O TYR B 88 SHEET 4 AA4 7 ALA B 38 VAL B 43 1 N VAL B 43 O LEU B 80 SHEET 5 AA4 7 VAL B 122 VAL B 126 -1 O ILE B 124 N ILE B 40 SHEET 6 AA4 7 ILE B 133 TYR B 137 -1 O TYR B 136 N VAL B 123 SHEET 7 AA4 7 TYR B 140 VAL B 144 -1 O VAL B 144 N ILE B 133 SITE 1 AC1 16 LEU A 39 GLY A 76 VAL A 92 HIS A 93 SITE 2 AC1 16 LEU A 94 GLY A 106 THR A 107 ARG A 108 SITE 3 AC1 16 THR A 111 SER A 127 ARG A 128 ARG A 129 SITE 4 AC1 16 HOH A 506 HOH A 513 HOH A 518 APC B 401 SITE 1 AC2 18 APC A 401 HOH A 506 LEU B 39 GLY B 76 SITE 2 AC2 18 VAL B 92 HIS B 93 LEU B 94 GLY B 106 SITE 3 AC2 18 THR B 107 ARG B 108 THR B 111 SER B 127 SITE 4 AC2 18 ARG B 128 ARG B 129 ARG B 130 HOH B 522 SITE 5 AC2 18 HOH B 538 HOH B 541 CRYST1 108.250 108.250 166.400 90.00 90.00 90.00 P 4 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009238 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006010 0.00000