HEADER TRANSFERASE 24-MAR-15 4YYY TITLE X-RAY STRUCTURE OF THE THYMIDINE PHOSPHORYLASE FROM SALMONELLA TITLE 2 TYPHIMURIUM IN COMPLEX WITH URIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE PHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TDRPASE; COMPND 5 EC: 2.4.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 99287; SOURCE 4 STRAIN: LT2; SOURCE 5 GENE: DEOA, STM4568; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS THYMIDINE PHOSPHORYLASE, NUCLEOSIDE, METABOLISM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.V.BALAEV,A.A.LASHKOV,A.G.GABDULKHAKOV,C.BETZEL,A.M.MIKHAILOV REVDAT 4 10-JAN-24 4YYY 1 REMARK REVDAT 3 25-MAR-20 4YYY 1 REMARK REVDAT 2 13-SEP-17 4YYY 1 REMARK REVDAT 1 09-MAR-16 4YYY 0 JRNL AUTH V.V.BALAEV,A.A.LASHKOV,A.G.GABDULKHAKOV,M.V.DONTSOVA, JRNL AUTH 2 T.A.SEREGINA,A.S.MIRONOV,C.BETZEL,A.M.MIKHAILOV JRNL TITL STRUCTURAL INVESTIGATION OF THE THYMIDINE PHOSPHORYLASE FROM JRNL TITL 2 SALMONELLA TYPHIMURIUM IN THE UNLIGANDED STATE AND ITS JRNL TITL 3 COMPLEXES WITH THYMIDINE AND URIDINE. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 72 224 2016 JRNL REFN ESSN 2053-230X JRNL PMID 26919527 JRNL DOI 10.1107/S2053230X1600162X REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 37930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1897 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.0666 - 5.8455 0.86 2501 132 0.1453 0.2100 REMARK 3 2 5.8455 - 4.6410 0.91 2557 135 0.1724 0.2105 REMARK 3 3 4.6410 - 4.0547 0.91 2534 133 0.1654 0.2297 REMARK 3 4 4.0547 - 3.6841 0.91 2554 135 0.1955 0.2687 REMARK 3 5 3.6841 - 3.4201 0.93 2574 135 0.2127 0.2867 REMARK 3 6 3.4201 - 3.2185 0.94 2619 138 0.2379 0.3010 REMARK 3 7 3.2185 - 3.0574 0.94 2602 136 0.2458 0.3379 REMARK 3 8 3.0574 - 2.9243 0.95 2636 139 0.2556 0.3634 REMARK 3 9 2.9243 - 2.8117 0.94 2614 137 0.2731 0.3037 REMARK 3 10 2.8117 - 2.7147 0.95 2631 138 0.2802 0.3787 REMARK 3 11 2.7147 - 2.6298 0.95 2588 136 0.2864 0.3867 REMARK 3 12 2.6298 - 2.5547 0.94 2622 140 0.3142 0.3904 REMARK 3 13 2.5547 - 2.4874 0.96 2630 138 0.3405 0.4204 REMARK 3 14 2.4874 - 2.4267 0.86 2371 125 0.3556 0.4478 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 37.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 54.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6773 REMARK 3 ANGLE : 1.157 9163 REMARK 3 CHIRALITY : 0.044 1061 REMARK 3 PLANARITY : 0.005 1195 REMARK 3 DIHEDRAL : 17.241 2494 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YYY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208315. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 48.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.770 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XR5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, 10% W/V PEG 6000, REMARK 280 PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 96.96650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 96.96650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.86500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 96.96650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 96.96650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.86500 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 96.96650 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 96.96650 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.86500 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 96.96650 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 96.96650 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.86500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -57.73000 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 415 CD REMARK 480 PHE B 24 CG REMARK 480 HIS B 119 CG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 178 O HOH A 601 1.90 REMARK 500 OG SER A 186 O3 CIT A 502 2.07 REMARK 500 NH1 ARG A 171 O VAL A 177 2.08 REMARK 500 OD1 ASP B 241 OH TYR B 435 2.13 REMARK 500 NZ LYS A 299 O HOH A 602 2.15 REMARK 500 OD1 ASP B 202 OG1 THR B 240 2.16 REMARK 500 O HOH A 605 O HOH A 629 2.17 REMARK 500 OD1 ASN B 78 OH TYR B 108 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER B 18 OE2 GLU B 311 7444 2.03 REMARK 500 OG SER A 35 OE2 GLU B 36 1556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 50 -161.89 62.94 REMARK 500 LYS A 73 -175.47 -66.59 REMARK 500 SER A 74 -63.73 65.05 REMARK 500 THR A 94 -38.49 -38.72 REMARK 500 ASN A 252 -83.93 -108.23 REMARK 500 TYR A 267 127.51 -171.92 REMARK 500 LYS A 321 5.05 84.59 REMARK 500 ASP A 385 51.12 -115.80 REMARK 500 ASP A 394 -152.84 -110.46 REMARK 500 TYR A 435 -117.26 -99.13 REMARK 500 LEU B 3 7.16 58.24 REMARK 500 SER B 18 11.87 90.52 REMARK 500 ASP B 19 -58.70 77.88 REMARK 500 ASP B 50 176.10 59.06 REMARK 500 ASP B 92 84.56 -69.33 REMARK 500 HIS B 119 157.87 88.08 REMARK 500 THR B 120 172.15 78.12 REMARK 500 LYS B 165 -70.31 -53.10 REMARK 500 ASP B 178 67.39 -67.32 REMARK 500 ALA B 247 -165.24 -75.72 REMARK 500 ASN B 252 -69.64 -131.19 REMARK 500 LYS B 321 35.15 72.42 REMARK 500 ASP B 391 154.85 -47.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 177 ASP A 178 -138.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 171 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URI B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue URI B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YEK RELATED DB: PDB REMARK 900 4YEK CONTAINS THE SAME PROTEIN COMPLEXED WITH THYMIDINE DBREF 4YYY A 1 440 UNP Q7CP66 TYPH_SALTY 1 440 DBREF 4YYY B 1 440 UNP Q7CP66 TYPH_SALTY 1 440 SEQRES 1 A 440 MET PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS ARG ASP SEQRES 2 A 440 GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE PHE ILE SEQRES 3 A 440 ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY GLN ILE SEQRES 4 A 440 ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP MET THR SEQRES 5 A 440 MET PRO GLU ARG VAL SER LEU THR MET ALA MET ARG ASP SEQRES 6 A 440 SER GLY THR VAL LEU ASP TRP LYS SER LEU ASN LEU ASN SEQRES 7 A 440 GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY VAL GLY SEQRES 8 A 440 ASP VAL THR SER LEU MET LEU GLY PRO MET VAL ALA ALA SEQRES 9 A 440 CYS GLY GLY TYR VAL PRO MET ILE SER GLY ARG GLY LEU SEQRES 10 A 440 GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU ALA ILE SEQRES 11 A 440 PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG PHE ARG SEQRES 12 A 440 GLU ILE ILE GLN ASP VAL GLY VAL ALA ILE ILE GLY GLN SEQRES 13 A 440 THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE TYR ALA SEQRES 14 A 440 THR ARG ASP ILE THR ALA THR VAL ASP SER ILE PRO LEU SEQRES 15 A 440 ILE THR GLY SER ILE LEU ALA LYS LYS LEU ALA GLU GLY SEQRES 16 A 440 LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SER GLY SEQRES 17 A 440 ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA LEU ALA SEQRES 18 A 440 GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY VAL ARG SEQRES 19 A 440 THR THR ALA LEU LEU THR ASP MET ASN GLN VAL LEU ALA SEQRES 20 A 440 SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU ALA VAL SEQRES 21 A 440 GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG LEU PHE SEQRES 22 A 440 ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU ILE SER SEQRES 23 A 440 GLY GLN LEU ALA LYS ASP ASP ALA GLU ALA ARG ALA LYS SEQRES 24 A 440 LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA GLU VAL SEQRES 25 A 440 PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO SER ASP SEQRES 26 A 440 PHE VAL GLU ASN TYR ASP LYS TYR LEU PRO THR ALA MET SEQRES 27 A 440 LEU SER LYS ALA VAL TYR ALA ASP THR GLU GLY PHE ILE SEQRES 28 A 440 SER ALA MET ASP THR ARG ALA LEU GLY MET ALA VAL VAL SEQRES 29 A 440 SER MET GLY GLY GLY ARG ARG GLN ALA SER ASP THR ILE SEQRES 30 A 440 ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG LEU GLY SEQRES 31 A 440 ASP SER ILE ASP GLY GLN ARG PRO LEU ALA VAL ILE HIS SEQRES 32 A 440 ALA LYS ASP GLU ALA SER TRP GLN GLU ALA ALA LYS ALA SEQRES 33 A 440 VAL LYS ALA ALA ILE ILE LEU ASP ASP LYS ALA PRO ALA SEQRES 34 A 440 SER THR PRO SER VAL TYR ARG ARG ILE THR GLU SEQRES 1 B 440 MET PHE LEU ALA GLN GLU ILE ILE ARG LYS LYS ARG ASP SEQRES 2 B 440 GLY HIS ALA LEU SER ASP GLU GLU ILE ARG PHE PHE ILE SEQRES 3 B 440 ASN GLY ILE ARG ASP ASN THR ILE SER GLU GLY GLN ILE SEQRES 4 B 440 ALA ALA LEU ALA MET THR ILE PHE PHE HIS ASP MET THR SEQRES 5 B 440 MET PRO GLU ARG VAL SER LEU THR MET ALA MET ARG ASP SEQRES 6 B 440 SER GLY THR VAL LEU ASP TRP LYS SER LEU ASN LEU ASN SEQRES 7 B 440 GLY PRO ILE VAL ASP LYS HIS SER THR GLY GLY VAL GLY SEQRES 8 B 440 ASP VAL THR SER LEU MET LEU GLY PRO MET VAL ALA ALA SEQRES 9 B 440 CYS GLY GLY TYR VAL PRO MET ILE SER GLY ARG GLY LEU SEQRES 10 B 440 GLY HIS THR GLY GLY THR LEU ASP LYS LEU GLU ALA ILE SEQRES 11 B 440 PRO GLY PHE ASP ILE PHE PRO ASP ASP ASN ARG PHE ARG SEQRES 12 B 440 GLU ILE ILE GLN ASP VAL GLY VAL ALA ILE ILE GLY GLN SEQRES 13 B 440 THR SER SER LEU ALA PRO ALA ASP LYS ARG PHE TYR ALA SEQRES 14 B 440 THR ARG ASP ILE THR ALA THR VAL ASP SER ILE PRO LEU SEQRES 15 B 440 ILE THR GLY SER ILE LEU ALA LYS LYS LEU ALA GLU GLY SEQRES 16 B 440 LEU ASP ALA LEU VAL MET ASP VAL LYS VAL GLY SER GLY SEQRES 17 B 440 ALA PHE MET PRO THR TYR GLU LEU SER GLU ALA LEU ALA SEQRES 18 B 440 GLU ALA ILE VAL GLY VAL ALA ASN GLY ALA GLY VAL ARG SEQRES 19 B 440 THR THR ALA LEU LEU THR ASP MET ASN GLN VAL LEU ALA SEQRES 20 B 440 SER SER ALA GLY ASN ALA VAL GLU VAL ARG GLU ALA VAL SEQRES 21 B 440 GLN PHE LEU THR GLY GLU TYR ARG ASN PRO ARG LEU PHE SEQRES 22 B 440 ASP VAL THR MET ALA LEU CYS VAL GLU MET LEU ILE SER SEQRES 23 B 440 GLY GLN LEU ALA LYS ASP ASP ALA GLU ALA ARG ALA LYS SEQRES 24 B 440 LEU GLN ALA VAL LEU ASP ASN GLY LYS ALA ALA GLU VAL SEQRES 25 B 440 PHE GLY ARG MET VAL ALA ALA GLN LYS GLY PRO SER ASP SEQRES 26 B 440 PHE VAL GLU ASN TYR ASP LYS TYR LEU PRO THR ALA MET SEQRES 27 B 440 LEU SER LYS ALA VAL TYR ALA ASP THR GLU GLY PHE ILE SEQRES 28 B 440 SER ALA MET ASP THR ARG ALA LEU GLY MET ALA VAL VAL SEQRES 29 B 440 SER MET GLY GLY GLY ARG ARG GLN ALA SER ASP THR ILE SEQRES 30 B 440 ASP TYR SER VAL GLY PHE THR ASP MET ALA ARG LEU GLY SEQRES 31 B 440 ASP SER ILE ASP GLY GLN ARG PRO LEU ALA VAL ILE HIS SEQRES 32 B 440 ALA LYS ASP GLU ALA SER TRP GLN GLU ALA ALA LYS ALA SEQRES 33 B 440 VAL LYS ALA ALA ILE ILE LEU ASP ASP LYS ALA PRO ALA SEQRES 34 B 440 SER THR PRO SER VAL TYR ARG ARG ILE THR GLU HET CIT A 501 13 HET CIT A 502 13 HET PGE A 503 10 HET URI B 501 17 HET URI B 502 17 HET CIT B 503 13 HETNAM CIT CITRIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM URI URIDINE FORMUL 3 CIT 3(C6 H8 O7) FORMUL 5 PGE C6 H14 O4 FORMUL 6 URI 2(C9 H12 N2 O6) FORMUL 9 HOH *44(H2 O) HELIX 1 AA1 LEU A 3 ASP A 13 1 11 HELIX 2 AA2 SER A 18 ASP A 31 1 14 HELIX 3 AA3 SER A 35 ASP A 50 1 16 HELIX 4 AA4 THR A 52 ASP A 65 1 14 HELIX 5 AA5 THR A 94 ALA A 104 1 11 HELIX 6 AA6 GLY A 122 GLU A 128 1 7 HELIX 7 AA7 ASP A 138 VAL A 149 1 12 HELIX 8 AA8 PRO A 162 ASP A 172 1 11 HELIX 9 AA9 SER A 179 ALA A 193 1 15 HELIX 10 AB1 THR A 213 ALA A 231 1 19 HELIX 11 AB2 ASN A 252 GLY A 265 1 14 HELIX 12 AB3 ASN A 269 GLY A 287 1 19 HELIX 13 AB4 ASP A 292 ASN A 306 1 15 HELIX 14 AB5 GLY A 307 GLN A 320 1 14 HELIX 15 AB6 ASN A 329 LEU A 334 1 6 HELIX 16 AB7 ASP A 355 SER A 365 1 11 HELIX 17 AB8 ASP A 406 ALA A 420 1 15 HELIX 18 AB9 LEU B 3 ARG B 12 1 10 HELIX 19 AC1 ASP B 19 ASP B 31 1 13 HELIX 20 AC2 SER B 35 ASP B 50 1 16 HELIX 21 AC3 THR B 52 SER B 66 1 15 HELIX 22 AC4 TRP B 72 ASN B 76 5 5 HELIX 23 AC5 VAL B 93 ALA B 104 1 12 HELIX 24 AC6 GLY B 122 GLU B 128 1 7 HELIX 25 AC7 ASP B 138 VAL B 149 1 12 HELIX 26 AC8 PRO B 162 ALA B 175 1 14 HELIX 27 AC9 SER B 179 ALA B 193 1 15 HELIX 28 AD1 THR B 213 ALA B 231 1 19 HELIX 29 AD2 ASN B 252 GLY B 265 1 14 HELIX 30 AD3 ASN B 269 GLY B 287 1 19 HELIX 31 AD4 ASP B 292 ASN B 306 1 15 HELIX 32 AD5 GLY B 307 GLN B 320 1 14 HELIX 33 AD6 ASN B 329 LEU B 334 1 6 HELIX 34 AD7 ASP B 355 GLY B 367 1 13 HELIX 35 AD8 ASP B 406 ALA B 420 1 15 SHEET 1 AA1 4 VAL A 82 SER A 86 0 SHEET 2 AA1 4 ALA A 198 VAL A 205 1 O ASP A 202 N HIS A 85 SHEET 3 AA1 4 ARG A 234 ASP A 241 1 O THR A 240 N VAL A 205 SHEET 4 AA1 4 VAL A 434 ILE A 438 -1 O ILE A 438 N ALA A 237 SHEET 1 AA2 2 VAL A 109 ILE A 112 0 SHEET 2 AA2 2 VAL A 151 ILE A 154 1 O ILE A 154 N MET A 111 SHEET 1 AA3 4 ALA A 250 GLY A 251 0 SHEET 2 AA3 4 GLY A 382 THR A 384 -1 O PHE A 383 N ALA A 250 SHEET 3 AA3 4 ALA A 400 ALA A 404 -1 O VAL A 401 N THR A 384 SHEET 4 AA3 4 LEU A 339 VAL A 343 -1 N LEU A 339 O ALA A 404 SHEET 1 AA4 3 SER A 392 ILE A 393 0 SHEET 2 AA4 3 GLY A 349 MET A 354 -1 N GLY A 349 O ILE A 393 SHEET 3 AA4 3 ILE A 421 ASP A 424 -1 O ILE A 422 N ALA A 353 SHEET 1 AA5 4 VAL B 82 SER B 86 0 SHEET 2 AA5 4 ALA B 198 VAL B 205 1 O ASP B 202 N HIS B 85 SHEET 3 AA5 4 ARG B 234 ASP B 241 1 O THR B 236 N MET B 201 SHEET 4 AA5 4 VAL B 434 ILE B 438 -1 O ARG B 436 N LEU B 239 SHEET 1 AA6 2 VAL B 109 SER B 113 0 SHEET 2 AA6 2 VAL B 151 GLY B 155 1 O ILE B 154 N SER B 113 SHEET 1 AA7 4 ALA B 250 GLY B 251 0 SHEET 2 AA7 4 GLY B 382 THR B 384 -1 O PHE B 383 N ALA B 250 SHEET 3 AA7 4 ALA B 400 ALA B 404 -1 O HIS B 403 N GLY B 382 SHEET 4 AA7 4 LEU B 339 VAL B 343 -1 N VAL B 343 O ALA B 400 SHEET 1 AA8 3 SER B 392 ILE B 393 0 SHEET 2 AA8 3 GLY B 349 MET B 354 -1 N GLY B 349 O ILE B 393 SHEET 3 AA8 3 ILE B 421 ASP B 424 -1 O ILE B 422 N SER B 352 SITE 1 AC1 7 LYS A 84 HIS A 85 SER A 86 SER A 95 SITE 2 AC1 7 SER A 113 THR A 123 LYS A 191 SITE 1 AC2 2 SER A 186 ILE A 187 SITE 1 AC3 4 TYR A 267 ASP A 385 THR A 439 GLU A 440 SITE 1 AC4 9 THR B 87 LEU B 117 GLY B 118 TYR B 168 SITE 2 AC4 9 ARG B 171 ILE B 183 SER B 186 ILE B 187 SITE 3 AC4 9 LYS B 190 SITE 1 AC5 4 LYS A 291 SER B 248 GLN B 261 TYR B 267 SITE 1 AC6 9 LYS B 84 HIS B 85 SER B 86 SER B 95 SITE 2 AC6 9 ILE B 112 SER B 113 GLY B 114 THR B 123 SITE 3 AC6 9 LYS B 191 CRYST1 193.933 193.933 57.730 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005156 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005156 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017322 0.00000