data_4YZI # _entry.id 4YZI # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.321 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4YZI WWPDB D_1000208352 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4YZI _pdbx_database_status.recvd_initial_deposition_date 2015-03-25 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kato, H.E.' 1 'Kamiya, M.' 2 'Ishitani, R.' 3 'Hayashi, S.' 4 'Nureki, O.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 6 _citation.language ? _citation.page_first 7177 _citation.page_last 7177 _citation.title 'Atomistic design of microbial opsin-based blue-shifted optogenetics tools.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/ncomms8177 _citation.pdbx_database_id_PubMed 25975962 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kato, H.E.' 1 ? primary 'Kamiya, M.' 2 ? primary 'Sugo, S.' 3 ? primary 'Ito, J.' 4 ? primary 'Taniguchi, R.' 5 ? primary 'Orito, A.' 6 ? primary 'Hirata, K.' 7 ? primary 'Inutsuka, A.' 8 ? primary 'Yamanaka, A.' 9 ? primary 'Maturana, A.D.' 10 ? primary 'Ishitani, R.' 11 ? primary 'Sudo, Y.' 12 ? primary 'Hayashi, S.' 13 ? primary 'Nureki, O.' 14 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 4YZI _cell.details ? _cell.formula_units_Z ? _cell.length_a 59.640 _cell.length_a_esd ? _cell.length_b 142.420 _cell.length_b_esd ? _cell.length_c 92.240 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sensory opsin A,Archaeal-type opsin 2' 34556.051 1 ? 'T198G, G202A' 'UNP RESIDUES 39-245,UNP RESIDUES 207-303' 'The fusion protein of Sensory opsin A (39-245) and Archaeal-type opsin 2 (207-303)' 2 non-polymer syn RETINAL 284.436 1 ? ? ? ? 3 non-polymer syn 'OLEIC ACID' 282.461 5 ? ? ? ? 4 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 5 water nat water 18.015 19 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Chlamyopsin 4 light-gated ion channel,Retinal binding protein,Sensory opsin B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PDYVFHRAHERMLFQTSYTLENNGSVICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSALCLMFYGYQTWKSTC GWEEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLANDYNKRTMGLLVSDIGG IVWATTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWGMFPILFILGPEGFGV LSVYGSTVGHTIIDLMSKNCWGLLGHYLRVLIHEHILIHGDIRKTTKLNIGGTEIEVETLVEDE ; _entity_poly.pdbx_seq_one_letter_code_can ;PDYVFHRAHERMLFQTSYTLENNGSVICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSALCLMFYGYQTWKSTC GWEEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLANDYNKRTMGLLVSDIGG IVWATTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKGRCRQVVTGMAWLFFVSWGMFPILFILGPEGFGV LSVYGSTVGHTIIDLMSKNCWGLLGHYLRVLIHEHILIHGDIRKTTKLNIGGTEIEVETLVEDE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ASP n 1 3 TYR n 1 4 VAL n 1 5 PHE n 1 6 HIS n 1 7 ARG n 1 8 ALA n 1 9 HIS n 1 10 GLU n 1 11 ARG n 1 12 MET n 1 13 LEU n 1 14 PHE n 1 15 GLN n 1 16 THR n 1 17 SER n 1 18 TYR n 1 19 THR n 1 20 LEU n 1 21 GLU n 1 22 ASN n 1 23 ASN n 1 24 GLY n 1 25 SER n 1 26 VAL n 1 27 ILE n 1 28 CYS n 1 29 ILE n 1 30 PRO n 1 31 ASN n 1 32 ASN n 1 33 GLY n 1 34 GLN n 1 35 CYS n 1 36 PHE n 1 37 CYS n 1 38 LEU n 1 39 ALA n 1 40 TRP n 1 41 LEU n 1 42 LYS n 1 43 SER n 1 44 ASN n 1 45 GLY n 1 46 THR n 1 47 ASN n 1 48 ALA n 1 49 GLU n 1 50 LYS n 1 51 LEU n 1 52 ALA n 1 53 ALA n 1 54 ASN n 1 55 ILE n 1 56 LEU n 1 57 GLN n 1 58 TRP n 1 59 ILE n 1 60 THR n 1 61 PHE n 1 62 ALA n 1 63 LEU n 1 64 SER n 1 65 ALA n 1 66 LEU n 1 67 CYS n 1 68 LEU n 1 69 MET n 1 70 PHE n 1 71 TYR n 1 72 GLY n 1 73 TYR n 1 74 GLN n 1 75 THR n 1 76 TRP n 1 77 LYS n 1 78 SER n 1 79 THR n 1 80 CYS n 1 81 GLY n 1 82 TRP n 1 83 GLU n 1 84 GLU n 1 85 ILE n 1 86 TYR n 1 87 VAL n 1 88 ALA n 1 89 THR n 1 90 ILE n 1 91 GLU n 1 92 MET n 1 93 ILE n 1 94 LYS n 1 95 PHE n 1 96 ILE n 1 97 ILE n 1 98 GLU n 1 99 TYR n 1 100 PHE n 1 101 HIS n 1 102 GLU n 1 103 PHE n 1 104 ASP n 1 105 GLU n 1 106 PRO n 1 107 ALA n 1 108 VAL n 1 109 ILE n 1 110 TYR n 1 111 SER n 1 112 SER n 1 113 ASN n 1 114 GLY n 1 115 ASN n 1 116 LYS n 1 117 THR n 1 118 VAL n 1 119 TRP n 1 120 LEU n 1 121 ARG n 1 122 TYR n 1 123 ALA n 1 124 GLU n 1 125 TRP n 1 126 LEU n 1 127 LEU n 1 128 THR n 1 129 CYS n 1 130 PRO n 1 131 VAL n 1 132 ILE n 1 133 LEU n 1 134 ILE n 1 135 HIS n 1 136 LEU n 1 137 SER n 1 138 ASN n 1 139 LEU n 1 140 THR n 1 141 GLY n 1 142 LEU n 1 143 ALA n 1 144 ASN n 1 145 ASP n 1 146 TYR n 1 147 ASN n 1 148 LYS n 1 149 ARG n 1 150 THR n 1 151 MET n 1 152 GLY n 1 153 LEU n 1 154 LEU n 1 155 VAL n 1 156 SER n 1 157 ASP n 1 158 ILE n 1 159 GLY n 1 160 GLY n 1 161 ILE n 1 162 VAL n 1 163 TRP n 1 164 ALA n 1 165 THR n 1 166 THR n 1 167 ALA n 1 168 ALA n 1 169 LEU n 1 170 SER n 1 171 LYS n 1 172 GLY n 1 173 TYR n 1 174 VAL n 1 175 ARG n 1 176 VAL n 1 177 ILE n 1 178 PHE n 1 179 PHE n 1 180 LEU n 1 181 MET n 1 182 GLY n 1 183 LEU n 1 184 CYS n 1 185 TYR n 1 186 GLY n 1 187 ILE n 1 188 TYR n 1 189 THR n 1 190 PHE n 1 191 PHE n 1 192 ASN n 1 193 ALA n 1 194 ALA n 1 195 LYS n 1 196 VAL n 1 197 TYR n 1 198 ILE n 1 199 GLU n 1 200 ALA n 1 201 TYR n 1 202 HIS n 1 203 THR n 1 204 VAL n 1 205 PRO n 1 206 LYS n 1 207 GLY n 1 208 ARG n 1 209 CYS n 1 210 ARG n 1 211 GLN n 1 212 VAL n 1 213 VAL n 1 214 THR n 1 215 GLY n 1 216 MET n 1 217 ALA n 1 218 TRP n 1 219 LEU n 1 220 PHE n 1 221 PHE n 1 222 VAL n 1 223 SER n 1 224 TRP n 1 225 GLY n 1 226 MET n 1 227 PHE n 1 228 PRO n 1 229 ILE n 1 230 LEU n 1 231 PHE n 1 232 ILE n 1 233 LEU n 1 234 GLY n 1 235 PRO n 1 236 GLU n 1 237 GLY n 1 238 PHE n 1 239 GLY n 1 240 VAL n 1 241 LEU n 1 242 SER n 1 243 VAL n 1 244 TYR n 1 245 GLY n 1 246 SER n 1 247 THR n 1 248 VAL n 1 249 GLY n 1 250 HIS n 1 251 THR n 1 252 ILE n 1 253 ILE n 1 254 ASP n 1 255 LEU n 1 256 MET n 1 257 SER n 1 258 LYS n 1 259 ASN n 1 260 CYS n 1 261 TRP n 1 262 GLY n 1 263 LEU n 1 264 LEU n 1 265 GLY n 1 266 HIS n 1 267 TYR n 1 268 LEU n 1 269 ARG n 1 270 VAL n 1 271 LEU n 1 272 ILE n 1 273 HIS n 1 274 GLU n 1 275 HIS n 1 276 ILE n 1 277 LEU n 1 278 ILE n 1 279 HIS n 1 280 GLY n 1 281 ASP n 1 282 ILE n 1 283 ARG n 1 284 LYS n 1 285 THR n 1 286 THR n 1 287 LYS n 1 288 LEU n 1 289 ASN n 1 290 ILE n 1 291 GLY n 1 292 GLY n 1 293 THR n 1 294 GLU n 1 295 ILE n 1 296 GLU n 1 297 VAL n 1 298 GLU n 1 299 THR n 1 300 LEU n 1 301 VAL n 1 302 GLU n 1 303 ASP n 1 304 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 207 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'CSOA, CSOB' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Chlamydomonas reinhardtii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3055 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'Fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP Q8L435_CHLRE Q8L435 ? 1 ;PDYVFHRAHERMLFQTSYTLENNGSVICIPNNGQCFCLAWLKSNGTNAEKLAANILQWITFALSALCLMFYGYQTWKSTC GWEEIYVATIEMIKFIIEYFHEFDEPAVIYSSNGNKTVWLRYAEWLLTCPVILIHLSNLTGLANDYNKRTMGLLVSDIGT IVWGTTAALSKGYVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPKG ; 39 2 UNP Q8RUT8_CHLRE Q8RUT8 ? 1 ;RCRQVVTGMAWLFFVSWGMFPILFILGPEGFGVLSVYGSTVGHTIIDLMSKNCWGLLGHYLRVLIHEHILIHGDIRKTTK LNIGGTEIEVETLVEDE ; 207 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4YZI A 1 ? 207 ? Q8L435 39 ? 245 ? 39 245 2 2 4YZI A 208 ? 304 ? Q8RUT8 207 ? 303 ? 246 342 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4YZI GLY A 160 ? UNP Q8L435 THR 198 'engineered mutation' 198 1 1 4YZI ALA A 164 ? UNP Q8L435 GLY 202 'engineered mutation' 202 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 OLA non-polymer . 'OLEIC ACID' ? 'C18 H34 O2' 282.461 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 RET non-polymer . RETINAL ? 'C20 H28 O' 284.436 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4YZI _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.98 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 58.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 500DME, HEPES-NaOH pH 7.0, Li2SO4, ATP' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-10-16 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL32XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL32XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4YZI _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.50 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13967 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 11.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4YZI _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.500 _refine.ls_d_res_low 37.143 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 13941 _refine.ls_number_reflns_R_free 693 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.88 _refine.ls_percent_reflns_R_free 4.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2238 _refine.ls_R_factor_R_free 0.2410 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2229 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 27.02 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.38 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2259 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 78 _refine_hist.number_atoms_solvent 19 _refine_hist.number_atoms_total 2356 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 37.143 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.003 ? 2397 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.726 ? 3243 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 16.111 ? 820 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.026 ? 363 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 394 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.5000 2.6930 . . 143 2581 100.00 . . . 0.3655 . 0.3002 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.6930 2.9639 . . 140 2613 100.00 . . . 0.2791 . 0.2575 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9639 3.3925 . . 133 2632 100.00 . . . 0.2435 . 0.2301 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3925 4.2732 . . 137 2663 100.00 . . . 0.2114 . 0.2001 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.2732 37.1469 . . 140 2759 100.00 . . . 0.2310 . 0.2157 . . . . . . . . . . # _struct.entry_id 4YZI _struct.title 'Crystal structure of blue-shifted channelrhodopsin mutant (T198G/G202A)' _struct.pdbx_descriptor 'Sensory opsin A,Archaeal-type opsin 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4YZI _struct_keywords.text 'membrane protein, channelrhodopsin, microbial rhodopsin' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 4 ? I N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 1 ? GLU A 10 ? PRO A 39 GLU A 48 1 ? 10 HELX_P HELX_P2 AA2 CYS A 37 ? LYS A 42 ? CYS A 75 LYS A 80 1 ? 6 HELX_P HELX_P3 AA3 THR A 46 ? TYR A 71 ? THR A 84 TYR A 109 1 ? 26 HELX_P HELX_P4 AA4 GLY A 81 ? GLU A 102 ? GLY A 119 GLU A 140 1 ? 22 HELX_P HELX_P5 AA5 VAL A 118 ? ASN A 138 ? VAL A 156 ASN A 176 1 ? 21 HELX_P HELX_P6 AA6 ARG A 149 ? SER A 170 ? ARG A 187 SER A 208 1 ? 22 HELX_P HELX_P7 AA7 LYS A 171 ? VAL A 204 ? LYS A 209 VAL A 242 1 ? 34 HELX_P HELX_P8 AA8 GLY A 207 ? GLY A 234 ? GLY A 245 GLY A 272 1 ? 28 HELX_P HELX_P9 AA9 SER A 242 ? LYS A 258 ? SER A 280 LYS A 296 1 ? 17 HELX_P HELX_P10 AB1 LYS A 258 ? GLY A 280 ? LYS A 296 GLY A 318 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 28 SG ? ? A CYS 66 A CYS 66 3_554 ? ? ? ? ? ? ? 2.062 ? disulf2 disulf ? ? A CYS 35 SG ? ? ? 1_555 A CYS 37 SG ? ? A CYS 73 A CYS 75 3_554 ? ? ? ? ? ? ? 2.035 ? metalc1 metalc ? ? A ASP 2 OD1 ? ? ? 1_555 H ZN . ZN ? ? A ASP 40 A ZN 407 1_555 ? ? ? ? ? ? ? 2.040 ? metalc2 metalc ? ? A HIS 6 ND1 ? ? ? 1_555 H ZN . ZN ? ? A HIS 44 A ZN 407 1_555 ? ? ? ? ? ? ? 2.218 ? metalc3 metalc ? ? A HIS 9 NE2 ? ? ? 1_555 H ZN . ZN ? ? A HIS 47 A ZN 407 1_555 ? ? ? ? ? ? ? 2.191 ? metalc4 metalc ? ? A ASP 104 OD1 ? ? ? 1_555 H ZN . ZN ? ? A ASP 142 A ZN 407 1_555 ? ? ? ? ? ? ? 2.082 ? covale1 covale one ? A LYS 258 NZ ? ? ? 1_555 B RET . C15 ? ? A LYS 296 A RET 401 1_555 ? ? ? ? ? ? ? 1.472 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? covale ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 105 A . ? GLU 143 A PRO 106 A ? PRO 144 A 1 0.83 2 ALA 143 A . ? ALA 181 A ASN 144 A ? ASN 182 A 1 0.22 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 19 ? GLU A 21 ? THR A 57 GLU A 59 AA1 2 VAL A 26 ? CYS A 28 ? VAL A 64 CYS A 66 AA2 1 ILE A 109 ? TYR A 110 ? ILE A 147 TYR A 148 AA2 2 LYS A 116 ? THR A 117 ? LYS A 154 THR A 155 AA3 1 ARG A 283 ? THR A 286 ? ARG A 321 THR A 324 AA3 2 VAL A 297 ? LEU A 300 ? VAL A 335 LEU A 338 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N GLU A 21 ? N GLU A 59 O VAL A 26 ? O VAL A 64 AA2 1 2 N ILE A 109 ? N ILE A 147 O THR A 117 ? O THR A 155 AA3 1 2 N THR A 286 ? N THR A 324 O VAL A 297 ? O VAL A 335 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A RET 401 ? 10 'binding site for residue RET A 401' AC2 Software A OLA 402 ? 5 'binding site for residue OLA A 402' AC3 Software A OLA 403 ? 5 'binding site for residue OLA A 403' AC4 Software A OLA 404 ? 1 'binding site for residue OLA A 404' AC5 Software A OLA 405 ? 4 'binding site for residue OLA A 405' AC6 Software A OLA 406 ? 3 'binding site for residue OLA A 406' AC7 Software A ZN 407 ? 4 'binding site for residue ZN A 407' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 TRP A 125 ? TRP A 163 . ? 1_555 ? 2 AC1 10 CYS A 129 ? CYS A 167 . ? 1_555 ? 3 AC1 10 GLY A 160 ? GLY A 198 . ? 1_555 ? 4 AC1 10 PHE A 179 ? PHE A 217 . ? 1_555 ? 5 AC1 10 GLY A 182 ? GLY A 220 . ? 1_555 ? 6 AC1 10 LEU A 183 ? LEU A 221 . ? 1_555 ? 7 AC1 10 TRP A 224 ? TRP A 262 . ? 1_555 ? 8 AC1 10 PHE A 227 ? PHE A 265 . ? 1_555 ? 9 AC1 10 SER A 257 ? SER A 295 . ? 1_555 ? 10 AC1 10 LYS A 258 ? LYS A 296 . ? 1_555 ? 11 AC2 5 TRP A 82 ? TRP A 120 . ? 3_554 ? 12 AC2 5 GLY A 152 ? GLY A 190 . ? 1_555 ? 13 AC2 5 SER A 156 ? SER A 194 . ? 1_555 ? 14 AC2 5 CYS A 184 ? CYS A 222 . ? 1_555 ? 15 AC2 5 TYR A 188 ? TYR A 226 . ? 1_555 ? 16 AC3 5 HIS A 101 ? HIS A 139 . ? 1_555 ? 17 AC3 5 ASP A 104 ? ASP A 142 . ? 1_555 ? 18 AC3 5 GLU A 105 ? GLU A 143 . ? 1_555 ? 19 AC3 5 PRO A 106 ? PRO A 144 . ? 1_555 ? 20 AC3 5 ALA A 107 ? ALA A 145 . ? 1_555 ? 21 AC4 1 ILE A 93 ? ILE A 131 . ? 3_554 ? 22 AC5 4 GLY A 172 ? GLY A 210 . ? 1_555 ? 23 AC5 4 ARG A 175 ? ARG A 213 . ? 1_555 ? 24 AC5 4 PHE A 179 ? PHE A 217 . ? 1_555 ? 25 AC5 4 GLY A 237 ? GLY A 275 . ? 1_555 ? 26 AC6 3 GLU A 49 ? GLU A 87 . ? 1_555 ? 27 AC6 3 GLY A 245 ? GLY A 283 . ? 1_555 ? 28 AC6 3 GLY A 249 ? GLY A 287 . ? 1_555 ? 29 AC7 4 ASP A 2 ? ASP A 40 . ? 1_555 ? 30 AC7 4 HIS A 6 ? HIS A 44 . ? 1_555 ? 31 AC7 4 HIS A 9 ? HIS A 47 . ? 1_555 ? 32 AC7 4 ASP A 104 ? ASP A 142 . ? 1_555 ? # _atom_sites.entry_id 4YZI _atom_sites.fract_transf_matrix[1][1] 0.016767 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007021 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010841 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 39 39 PRO PRO A . n A 1 2 ASP 2 40 40 ASP ASP A . n A 1 3 TYR 3 41 41 TYR TYR A . n A 1 4 VAL 4 42 42 VAL VAL A . n A 1 5 PHE 5 43 43 PHE PHE A . n A 1 6 HIS 6 44 44 HIS HIS A . n A 1 7 ARG 7 45 45 ARG ARG A . n A 1 8 ALA 8 46 46 ALA ALA A . n A 1 9 HIS 9 47 47 HIS HIS A . n A 1 10 GLU 10 48 48 GLU GLU A . n A 1 11 ARG 11 49 49 ARG ARG A . n A 1 12 MET 12 50 50 MET MET A . n A 1 13 LEU 13 51 51 LEU LEU A . n A 1 14 PHE 14 52 52 PHE PHE A . n A 1 15 GLN 15 53 53 GLN GLN A . n A 1 16 THR 16 54 54 THR THR A . n A 1 17 SER 17 55 55 SER SER A . n A 1 18 TYR 18 56 56 TYR TYR A . n A 1 19 THR 19 57 57 THR THR A . n A 1 20 LEU 20 58 58 LEU LEU A . n A 1 21 GLU 21 59 59 GLU GLU A . n A 1 22 ASN 22 60 60 ASN ASN A . n A 1 23 ASN 23 61 61 ASN ASN A . n A 1 24 GLY 24 62 62 GLY GLY A . n A 1 25 SER 25 63 63 SER SER A . n A 1 26 VAL 26 64 64 VAL VAL A . n A 1 27 ILE 27 65 65 ILE ILE A . n A 1 28 CYS 28 66 66 CYS CYS A . n A 1 29 ILE 29 67 67 ILE ILE A . n A 1 30 PRO 30 68 68 PRO PRO A . n A 1 31 ASN 31 69 69 ASN ASN A . n A 1 32 ASN 32 70 70 ASN ASN A . n A 1 33 GLY 33 71 71 GLY GLY A . n A 1 34 GLN 34 72 72 GLN GLN A . n A 1 35 CYS 35 73 73 CYS CYS A . n A 1 36 PHE 36 74 74 PHE PHE A . n A 1 37 CYS 37 75 75 CYS CYS A . n A 1 38 LEU 38 76 76 LEU LEU A . n A 1 39 ALA 39 77 77 ALA ALA A . n A 1 40 TRP 40 78 78 TRP TRP A . n A 1 41 LEU 41 79 79 LEU LEU A . n A 1 42 LYS 42 80 80 LYS LYS A . n A 1 43 SER 43 81 81 SER SER A . n A 1 44 ASN 44 82 82 ASN ASN A . n A 1 45 GLY 45 83 83 GLY GLY A . n A 1 46 THR 46 84 84 THR THR A . n A 1 47 ASN 47 85 85 ASN ASN A . n A 1 48 ALA 48 86 86 ALA ALA A . n A 1 49 GLU 49 87 87 GLU GLU A . n A 1 50 LYS 50 88 88 LYS LYS A . n A 1 51 LEU 51 89 89 LEU LEU A . n A 1 52 ALA 52 90 90 ALA ALA A . n A 1 53 ALA 53 91 91 ALA ALA A . n A 1 54 ASN 54 92 92 ASN ASN A . n A 1 55 ILE 55 93 93 ILE ILE A . n A 1 56 LEU 56 94 94 LEU LEU A . n A 1 57 GLN 57 95 95 GLN GLN A . n A 1 58 TRP 58 96 96 TRP TRP A . n A 1 59 ILE 59 97 97 ILE ILE A . n A 1 60 THR 60 98 98 THR THR A . n A 1 61 PHE 61 99 99 PHE PHE A . n A 1 62 ALA 62 100 100 ALA ALA A . n A 1 63 LEU 63 101 101 LEU LEU A . n A 1 64 SER 64 102 102 SER SER A . n A 1 65 ALA 65 103 103 ALA ALA A . n A 1 66 LEU 66 104 104 LEU LEU A . n A 1 67 CYS 67 105 105 CYS CYS A . n A 1 68 LEU 68 106 106 LEU LEU A . n A 1 69 MET 69 107 107 MET MET A . n A 1 70 PHE 70 108 108 PHE PHE A . n A 1 71 TYR 71 109 109 TYR TYR A . n A 1 72 GLY 72 110 ? ? ? A . n A 1 73 TYR 73 111 ? ? ? A . n A 1 74 GLN 74 112 ? ? ? A . n A 1 75 THR 75 113 ? ? ? A . n A 1 76 TRP 76 114 ? ? ? A . n A 1 77 LYS 77 115 ? ? ? A . n A 1 78 SER 78 116 ? ? ? A . n A 1 79 THR 79 117 ? ? ? A . n A 1 80 CYS 80 118 118 CYS CYS A . n A 1 81 GLY 81 119 119 GLY GLY A . n A 1 82 TRP 82 120 120 TRP TRP A . n A 1 83 GLU 83 121 121 GLU GLU A . n A 1 84 GLU 84 122 122 GLU GLU A . n A 1 85 ILE 85 123 123 ILE ILE A . n A 1 86 TYR 86 124 124 TYR TYR A . n A 1 87 VAL 87 125 125 VAL VAL A . n A 1 88 ALA 88 126 126 ALA ALA A . n A 1 89 THR 89 127 127 THR THR A . n A 1 90 ILE 90 128 128 ILE ILE A . n A 1 91 GLU 91 129 129 GLU GLU A . n A 1 92 MET 92 130 130 MET MET A . n A 1 93 ILE 93 131 131 ILE ILE A . n A 1 94 LYS 94 132 132 LYS LYS A . n A 1 95 PHE 95 133 133 PHE PHE A . n A 1 96 ILE 96 134 134 ILE ILE A . n A 1 97 ILE 97 135 135 ILE ILE A . n A 1 98 GLU 98 136 136 GLU GLU A . n A 1 99 TYR 99 137 137 TYR TYR A . n A 1 100 PHE 100 138 138 PHE PHE A . n A 1 101 HIS 101 139 139 HIS HIS A . n A 1 102 GLU 102 140 140 GLU GLU A . n A 1 103 PHE 103 141 141 PHE PHE A . n A 1 104 ASP 104 142 142 ASP ASP A . n A 1 105 GLU 105 143 143 GLU GLU A . n A 1 106 PRO 106 144 144 PRO PRO A . n A 1 107 ALA 107 145 145 ALA ALA A . n A 1 108 VAL 108 146 146 VAL VAL A . n A 1 109 ILE 109 147 147 ILE ILE A . n A 1 110 TYR 110 148 148 TYR TYR A . n A 1 111 SER 111 149 149 SER SER A . n A 1 112 SER 112 150 150 SER SER A . n A 1 113 ASN 113 151 151 ASN ASN A . n A 1 114 GLY 114 152 152 GLY GLY A . n A 1 115 ASN 115 153 153 ASN ASN A . n A 1 116 LYS 116 154 154 LYS LYS A . n A 1 117 THR 117 155 155 THR THR A . n A 1 118 VAL 118 156 156 VAL VAL A . n A 1 119 TRP 119 157 157 TRP TRP A . n A 1 120 LEU 120 158 158 LEU LEU A . n A 1 121 ARG 121 159 159 ARG ARG A . n A 1 122 TYR 122 160 160 TYR TYR A . n A 1 123 ALA 123 161 161 ALA ALA A . n A 1 124 GLU 124 162 162 GLU GLU A . n A 1 125 TRP 125 163 163 TRP TRP A . n A 1 126 LEU 126 164 164 LEU LEU A . n A 1 127 LEU 127 165 165 LEU LEU A . n A 1 128 THR 128 166 166 THR THR A . n A 1 129 CYS 129 167 167 CYS CYS A . n A 1 130 PRO 130 168 168 PRO PRO A . n A 1 131 VAL 131 169 169 VAL VAL A . n A 1 132 ILE 132 170 170 ILE ILE A . n A 1 133 LEU 133 171 171 LEU LEU A . n A 1 134 ILE 134 172 172 ILE ILE A . n A 1 135 HIS 135 173 173 HIS HIS A . n A 1 136 LEU 136 174 174 LEU LEU A . n A 1 137 SER 137 175 175 SER SER A . n A 1 138 ASN 138 176 176 ASN ASN A . n A 1 139 LEU 139 177 177 LEU LEU A . n A 1 140 THR 140 178 178 THR THR A . n A 1 141 GLY 141 179 179 GLY GLY A . n A 1 142 LEU 142 180 180 LEU LEU A . n A 1 143 ALA 143 181 181 ALA ALA A . n A 1 144 ASN 144 182 182 ASN ASN A . n A 1 145 ASP 145 183 183 ASP ASP A . n A 1 146 TYR 146 184 184 TYR TYR A . n A 1 147 ASN 147 185 185 ASN ASN A . n A 1 148 LYS 148 186 186 LYS LYS A . n A 1 149 ARG 149 187 187 ARG ARG A . n A 1 150 THR 150 188 188 THR THR A . n A 1 151 MET 151 189 189 MET MET A . n A 1 152 GLY 152 190 190 GLY GLY A . n A 1 153 LEU 153 191 191 LEU LEU A . n A 1 154 LEU 154 192 192 LEU LEU A . n A 1 155 VAL 155 193 193 VAL VAL A . n A 1 156 SER 156 194 194 SER SER A . n A 1 157 ASP 157 195 195 ASP ASP A . n A 1 158 ILE 158 196 196 ILE ILE A . n A 1 159 GLY 159 197 197 GLY GLY A . n A 1 160 GLY 160 198 198 GLY GLY A . n A 1 161 ILE 161 199 199 ILE ILE A . n A 1 162 VAL 162 200 200 VAL VAL A . n A 1 163 TRP 163 201 201 TRP TRP A . n A 1 164 ALA 164 202 202 ALA ALA A . n A 1 165 THR 165 203 203 THR THR A . n A 1 166 THR 166 204 204 THR THR A . n A 1 167 ALA 167 205 205 ALA ALA A . n A 1 168 ALA 168 206 206 ALA ALA A . n A 1 169 LEU 169 207 207 LEU LEU A . n A 1 170 SER 170 208 208 SER SER A . n A 1 171 LYS 171 209 209 LYS LYS A . n A 1 172 GLY 172 210 210 GLY GLY A . n A 1 173 TYR 173 211 211 TYR TYR A . n A 1 174 VAL 174 212 212 VAL VAL A . n A 1 175 ARG 175 213 213 ARG ARG A . n A 1 176 VAL 176 214 214 VAL VAL A . n A 1 177 ILE 177 215 215 ILE ILE A . n A 1 178 PHE 178 216 216 PHE PHE A . n A 1 179 PHE 179 217 217 PHE PHE A . n A 1 180 LEU 180 218 218 LEU LEU A . n A 1 181 MET 181 219 219 MET MET A . n A 1 182 GLY 182 220 220 GLY GLY A . n A 1 183 LEU 183 221 221 LEU LEU A . n A 1 184 CYS 184 222 222 CYS CYS A . n A 1 185 TYR 185 223 223 TYR TYR A . n A 1 186 GLY 186 224 224 GLY GLY A . n A 1 187 ILE 187 225 225 ILE ILE A . n A 1 188 TYR 188 226 226 TYR TYR A . n A 1 189 THR 189 227 227 THR THR A . n A 1 190 PHE 190 228 228 PHE PHE A . n A 1 191 PHE 191 229 229 PHE PHE A . n A 1 192 ASN 192 230 230 ASN ASN A . n A 1 193 ALA 193 231 231 ALA ALA A . n A 1 194 ALA 194 232 232 ALA ALA A . n A 1 195 LYS 195 233 233 LYS LYS A . n A 1 196 VAL 196 234 234 VAL VAL A . n A 1 197 TYR 197 235 235 TYR TYR A . n A 1 198 ILE 198 236 236 ILE ILE A . n A 1 199 GLU 199 237 237 GLU GLU A . n A 1 200 ALA 200 238 238 ALA ALA A . n A 1 201 TYR 201 239 239 TYR TYR A . n A 1 202 HIS 202 240 240 HIS HIS A . n A 1 203 THR 203 241 241 THR THR A . n A 1 204 VAL 204 242 242 VAL VAL A . n A 1 205 PRO 205 243 243 PRO PRO A . n A 1 206 LYS 206 244 244 LYS LYS A . n A 1 207 GLY 207 245 245 GLY GLY A . n A 1 208 ARG 208 246 246 ARG ARG A . n A 1 209 CYS 209 247 247 CYS CYS A . n A 1 210 ARG 210 248 248 ARG ARG A . n A 1 211 GLN 211 249 249 GLN GLN A . n A 1 212 VAL 212 250 250 VAL VAL A . n A 1 213 VAL 213 251 251 VAL VAL A . n A 1 214 THR 214 252 252 THR THR A . n A 1 215 GLY 215 253 253 GLY GLY A . n A 1 216 MET 216 254 254 MET MET A . n A 1 217 ALA 217 255 255 ALA ALA A . n A 1 218 TRP 218 256 256 TRP TRP A . n A 1 219 LEU 219 257 257 LEU LEU A . n A 1 220 PHE 220 258 258 PHE PHE A . n A 1 221 PHE 221 259 259 PHE PHE A . n A 1 222 VAL 222 260 260 VAL VAL A . n A 1 223 SER 223 261 261 SER SER A . n A 1 224 TRP 224 262 262 TRP TRP A . n A 1 225 GLY 225 263 263 GLY GLY A . n A 1 226 MET 226 264 264 MET MET A . n A 1 227 PHE 227 265 265 PHE PHE A . n A 1 228 PRO 228 266 266 PRO PRO A . n A 1 229 ILE 229 267 267 ILE ILE A . n A 1 230 LEU 230 268 268 LEU LEU A . n A 1 231 PHE 231 269 269 PHE PHE A . n A 1 232 ILE 232 270 270 ILE ILE A . n A 1 233 LEU 233 271 271 LEU LEU A . n A 1 234 GLY 234 272 272 GLY GLY A . n A 1 235 PRO 235 273 273 PRO PRO A . n A 1 236 GLU 236 274 274 GLU GLU A . n A 1 237 GLY 237 275 275 GLY GLY A . n A 1 238 PHE 238 276 276 PHE PHE A . n A 1 239 GLY 239 277 277 GLY GLY A . n A 1 240 VAL 240 278 278 VAL VAL A . n A 1 241 LEU 241 279 279 LEU LEU A . n A 1 242 SER 242 280 280 SER SER A . n A 1 243 VAL 243 281 281 VAL VAL A . n A 1 244 TYR 244 282 282 TYR TYR A . n A 1 245 GLY 245 283 283 GLY GLY A . n A 1 246 SER 246 284 284 SER SER A . n A 1 247 THR 247 285 285 THR THR A . n A 1 248 VAL 248 286 286 VAL VAL A . n A 1 249 GLY 249 287 287 GLY GLY A . n A 1 250 HIS 250 288 288 HIS HIS A . n A 1 251 THR 251 289 289 THR THR A . n A 1 252 ILE 252 290 290 ILE ILE A . n A 1 253 ILE 253 291 291 ILE ILE A . n A 1 254 ASP 254 292 292 ASP ASP A . n A 1 255 LEU 255 293 293 LEU LEU A . n A 1 256 MET 256 294 294 MET MET A . n A 1 257 SER 257 295 295 SER SER A . n A 1 258 LYS 258 296 296 LYS LYS A . n A 1 259 ASN 259 297 297 ASN ASN A . n A 1 260 CYS 260 298 298 CYS CYS A . n A 1 261 TRP 261 299 299 TRP TRP A . n A 1 262 GLY 262 300 300 GLY GLY A . n A 1 263 LEU 263 301 301 LEU LEU A . n A 1 264 LEU 264 302 302 LEU LEU A . n A 1 265 GLY 265 303 303 GLY GLY A . n A 1 266 HIS 266 304 304 HIS HIS A . n A 1 267 TYR 267 305 305 TYR TYR A . n A 1 268 LEU 268 306 306 LEU LEU A . n A 1 269 ARG 269 307 307 ARG ARG A . n A 1 270 VAL 270 308 308 VAL VAL A . n A 1 271 LEU 271 309 309 LEU LEU A . n A 1 272 ILE 272 310 310 ILE ILE A . n A 1 273 HIS 273 311 311 HIS HIS A . n A 1 274 GLU 274 312 312 GLU GLU A . n A 1 275 HIS 275 313 313 HIS HIS A . n A 1 276 ILE 276 314 314 ILE ILE A . n A 1 277 LEU 277 315 315 LEU LEU A . n A 1 278 ILE 278 316 316 ILE ILE A . n A 1 279 HIS 279 317 317 HIS HIS A . n A 1 280 GLY 280 318 318 GLY GLY A . n A 1 281 ASP 281 319 319 ASP ASP A . n A 1 282 ILE 282 320 320 ILE ILE A . n A 1 283 ARG 283 321 321 ARG ARG A . n A 1 284 LYS 284 322 322 LYS LYS A . n A 1 285 THR 285 323 323 THR THR A . n A 1 286 THR 286 324 324 THR THR A . n A 1 287 LYS 287 325 325 LYS LYS A . n A 1 288 LEU 288 326 ? ? ? A . n A 1 289 ASN 289 327 ? ? ? A . n A 1 290 ILE 290 328 ? ? ? A . n A 1 291 GLY 291 329 ? ? ? A . n A 1 292 GLY 292 330 ? ? ? A . n A 1 293 THR 293 331 ? ? ? A . n A 1 294 GLU 294 332 ? ? ? A . n A 1 295 ILE 295 333 333 ILE ILE A . n A 1 296 GLU 296 334 334 GLU GLU A . n A 1 297 VAL 297 335 335 VAL VAL A . n A 1 298 GLU 298 336 336 GLU GLU A . n A 1 299 THR 299 337 337 THR THR A . n A 1 300 LEU 300 338 338 LEU LEU A . n A 1 301 VAL 301 339 339 VAL VAL A . n A 1 302 GLU 302 340 340 GLU GLU A . n A 1 303 ASP 303 341 341 ASP ASP A . n A 1 304 GLU 304 342 342 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET 1 401 1 RET RET A . C 3 OLA 1 402 1 OLA OLA A . D 3 OLA 1 403 2 OLA OLA A . E 3 OLA 1 404 3 OLA OLA A . F 3 OLA 1 405 4 OLA OLA A . G 3 OLA 1 406 5 OLA OLA A . H 4 ZN 1 407 1 ZN ZN A . I 5 HOH 1 501 16 HOH HOH A . I 5 HOH 2 502 13 HOH HOH A . I 5 HOH 3 503 2 HOH HOH A . I 5 HOH 4 504 9 HOH HOH A . I 5 HOH 5 505 3 HOH HOH A . I 5 HOH 6 506 15 HOH HOH A . I 5 HOH 7 507 19 HOH HOH A . I 5 HOH 8 508 8 HOH HOH A . I 5 HOH 9 509 4 HOH HOH A . I 5 HOH 10 510 1 HOH HOH A . I 5 HOH 11 511 14 HOH HOH A . I 5 HOH 12 512 10 HOH HOH A . I 5 HOH 13 513 6 HOH HOH A . I 5 HOH 14 514 17 HOH HOH A . I 5 HOH 15 515 5 HOH HOH A . I 5 HOH 16 516 12 HOH HOH A . I 5 HOH 17 517 18 HOH HOH A . I 5 HOH 18 518 7 HOH HOH A . I 5 HOH 19 519 11 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 10790 ? 1 MORE 8 ? 1 'SSA (A^2)' 23670 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 -46.1200000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD1 ? A ASP 2 ? A ASP 40 ? 1_555 ZN ? H ZN . ? A ZN 407 ? 1_555 ND1 ? A HIS 6 ? A HIS 44 ? 1_555 108.8 ? 2 OD1 ? A ASP 2 ? A ASP 40 ? 1_555 ZN ? H ZN . ? A ZN 407 ? 1_555 NE2 ? A HIS 9 ? A HIS 47 ? 1_555 110.6 ? 3 ND1 ? A HIS 6 ? A HIS 44 ? 1_555 ZN ? H ZN . ? A ZN 407 ? 1_555 NE2 ? A HIS 9 ? A HIS 47 ? 1_555 110.1 ? 4 OD1 ? A ASP 2 ? A ASP 40 ? 1_555 ZN ? H ZN . ? A ZN 407 ? 1_555 OD1 ? A ASP 104 ? A ASP 142 ? 1_555 116.6 ? 5 ND1 ? A HIS 6 ? A HIS 44 ? 1_555 ZN ? H ZN . ? A ZN 407 ? 1_555 OD1 ? A ASP 104 ? A ASP 142 ? 1_555 100.5 ? 6 NE2 ? A HIS 9 ? A HIS 47 ? 1_555 ZN ? H ZN . ? A ZN 407 ? 1_555 OD1 ? A ASP 104 ? A ASP 142 ? 1_555 109.8 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-05-27 2 'Structure model' 1 1 2020-02-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Source and taxonomy' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_source 2 2 'Structure model' entity_src_gen 3 2 'Structure model' pdbx_struct_assembly 4 2 'Structure model' pdbx_struct_assembly_prop 5 2 'Structure model' pdbx_struct_oper_list 6 2 'Structure model' pdbx_unobs_or_zero_occ_atoms # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 2 2 'Structure model' '_entity_src_gen.pdbx_alt_source_flag' 3 2 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 4 2 'Structure model' '_pdbx_struct_assembly_prop.type' 5 2 'Structure model' '_pdbx_struct_assembly_prop.value' 6 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.8.3_1479)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A TYR 41 ? CG ? A TYR 3 CG 2 1 Y 1 A TYR 41 ? CD1 ? A TYR 3 CD1 3 1 Y 1 A TYR 41 ? CD2 ? A TYR 3 CD2 4 1 Y 1 A TYR 41 ? CE1 ? A TYR 3 CE1 5 1 Y 1 A TYR 41 ? CE2 ? A TYR 3 CE2 6 1 Y 1 A TYR 41 ? CZ ? A TYR 3 CZ 7 1 Y 1 A TYR 41 ? OH ? A TYR 3 OH 8 1 Y 1 A ARG 45 ? CG ? A ARG 7 CG 9 1 Y 1 A ARG 45 ? CD ? A ARG 7 CD 10 1 Y 1 A ARG 45 ? NE ? A ARG 7 NE 11 1 Y 1 A ARG 45 ? CZ ? A ARG 7 CZ 12 1 Y 1 A ARG 45 ? NH1 ? A ARG 7 NH1 13 1 Y 1 A ARG 45 ? NH2 ? A ARG 7 NH2 14 1 Y 1 A ARG 49 ? CD ? A ARG 11 CD 15 1 Y 1 A ARG 49 ? NE ? A ARG 11 NE 16 1 Y 1 A ARG 49 ? CZ ? A ARG 11 CZ 17 1 Y 1 A ARG 49 ? NH1 ? A ARG 11 NH1 18 1 Y 1 A ARG 49 ? NH2 ? A ARG 11 NH2 19 1 Y 1 A MET 50 ? CG ? A MET 12 CG 20 1 Y 1 A MET 50 ? SD ? A MET 12 SD 21 1 Y 1 A MET 50 ? CE ? A MET 12 CE 22 1 Y 1 A LYS 80 ? CD ? A LYS 42 CD 23 1 Y 1 A LYS 80 ? CE ? A LYS 42 CE 24 1 Y 1 A LYS 80 ? NZ ? A LYS 42 NZ 25 1 Y 1 A CYS 118 ? SG ? A CYS 80 SG 26 1 Y 1 A LYS 186 ? CD ? A LYS 148 CD 27 1 Y 1 A LYS 186 ? CE ? A LYS 148 CE 28 1 Y 1 A LYS 186 ? NZ ? A LYS 148 NZ 29 1 Y 1 A ARG 187 ? CG ? A ARG 149 CG 30 1 Y 1 A ARG 187 ? CD ? A ARG 149 CD 31 1 Y 1 A ARG 187 ? NE ? A ARG 149 NE 32 1 Y 1 A ARG 187 ? CZ ? A ARG 149 CZ 33 1 Y 1 A ARG 187 ? NH1 ? A ARG 149 NH1 34 1 Y 1 A ARG 187 ? NH2 ? A ARG 149 NH2 35 1 Y 1 A LYS 244 ? CG ? A LYS 206 CG 36 1 Y 1 A LYS 244 ? CD ? A LYS 206 CD 37 1 Y 1 A LYS 244 ? CE ? A LYS 206 CE 38 1 Y 1 A LYS 244 ? NZ ? A LYS 206 NZ 39 1 Y 1 A ARG 246 ? NE ? A ARG 208 NE 40 1 Y 1 A ARG 246 ? CZ ? A ARG 208 CZ 41 1 Y 1 A ARG 246 ? NH1 ? A ARG 208 NH1 42 1 Y 1 A ARG 246 ? NH2 ? A ARG 208 NH2 43 1 Y 1 A LYS 325 ? CG ? A LYS 287 CG 44 1 Y 1 A LYS 325 ? CD ? A LYS 287 CD 45 1 Y 1 A LYS 325 ? CE ? A LYS 287 CE 46 1 Y 1 A LYS 325 ? NZ ? A LYS 287 NZ 47 1 Y 1 A ILE 333 ? CG1 ? A ILE 295 CG1 48 1 Y 1 A ILE 333 ? CG2 ? A ILE 295 CG2 49 1 Y 1 A ILE 333 ? CD1 ? A ILE 295 CD1 50 1 Y 1 A GLU 334 ? CG ? A GLU 296 CG 51 1 Y 1 A GLU 334 ? CD ? A GLU 296 CD 52 1 Y 1 A GLU 334 ? OE1 ? A GLU 296 OE1 53 1 Y 1 A GLU 334 ? OE2 ? A GLU 296 OE2 54 1 Y 1 A ASP 341 ? CG ? A ASP 303 CG 55 1 Y 1 A ASP 341 ? OD1 ? A ASP 303 OD1 56 1 Y 1 A ASP 341 ? OD2 ? A ASP 303 OD2 57 1 Y 1 A GLU 342 ? CG ? A GLU 304 CG 58 1 Y 1 A GLU 342 ? CD ? A GLU 304 CD 59 1 Y 1 A GLU 342 ? OE1 ? A GLU 304 OE1 60 1 Y 1 A GLU 342 ? OE2 ? A GLU 304 OE2 61 1 N 1 A OLA 402 ? C12 ? C OLA 1 C12 62 1 N 1 A OLA 402 ? C13 ? C OLA 1 C13 63 1 N 1 A OLA 402 ? C14 ? C OLA 1 C14 64 1 N 1 A OLA 402 ? C15 ? C OLA 1 C15 65 1 N 1 A OLA 402 ? C16 ? C OLA 1 C16 66 1 N 1 A OLA 402 ? C17 ? C OLA 1 C17 67 1 N 1 A OLA 402 ? C18 ? C OLA 1 C18 68 1 N 1 A OLA 403 ? C13 ? D OLA 1 C13 69 1 N 1 A OLA 403 ? C14 ? D OLA 1 C14 70 1 N 1 A OLA 403 ? C15 ? D OLA 1 C15 71 1 N 1 A OLA 403 ? C16 ? D OLA 1 C16 72 1 N 1 A OLA 403 ? C17 ? D OLA 1 C17 73 1 N 1 A OLA 403 ? C18 ? D OLA 1 C18 74 1 N 1 A OLA 404 ? O1 ? E OLA 1 O1 75 1 N 1 A OLA 404 ? O2 ? E OLA 1 O2 76 1 N 1 A OLA 404 ? C10 ? E OLA 1 C10 77 1 N 1 A OLA 404 ? C11 ? E OLA 1 C11 78 1 N 1 A OLA 404 ? C12 ? E OLA 1 C12 79 1 N 1 A OLA 404 ? C13 ? E OLA 1 C13 80 1 N 1 A OLA 404 ? C14 ? E OLA 1 C14 81 1 N 1 A OLA 404 ? C15 ? E OLA 1 C15 82 1 N 1 A OLA 404 ? C16 ? E OLA 1 C16 83 1 N 1 A OLA 404 ? C17 ? E OLA 1 C17 84 1 N 1 A OLA 404 ? C18 ? E OLA 1 C18 85 1 N 1 A OLA 405 ? C10 ? F OLA 1 C10 86 1 N 1 A OLA 405 ? C11 ? F OLA 1 C11 87 1 N 1 A OLA 405 ? C12 ? F OLA 1 C12 88 1 N 1 A OLA 405 ? C13 ? F OLA 1 C13 89 1 N 1 A OLA 405 ? C14 ? F OLA 1 C14 90 1 N 1 A OLA 405 ? C15 ? F OLA 1 C15 91 1 N 1 A OLA 405 ? C16 ? F OLA 1 C16 92 1 N 1 A OLA 405 ? C17 ? F OLA 1 C17 93 1 N 1 A OLA 405 ? C18 ? F OLA 1 C18 94 1 N 1 A OLA 406 ? O1 ? G OLA 1 O1 95 1 N 1 A OLA 406 ? O2 ? G OLA 1 O2 96 1 N 1 A OLA 406 ? C11 ? G OLA 1 C11 97 1 N 1 A OLA 406 ? C12 ? G OLA 1 C12 98 1 N 1 A OLA 406 ? C13 ? G OLA 1 C13 99 1 N 1 A OLA 406 ? C14 ? G OLA 1 C14 100 1 N 1 A OLA 406 ? C15 ? G OLA 1 C15 101 1 N 1 A OLA 406 ? C16 ? G OLA 1 C16 102 1 N 1 A OLA 406 ? C17 ? G OLA 1 C17 103 1 N 1 A OLA 406 ? C18 ? G OLA 1 C18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 110 ? A GLY 72 2 1 Y 1 A TYR 111 ? A TYR 73 3 1 Y 1 A GLN 112 ? A GLN 74 4 1 Y 1 A THR 113 ? A THR 75 5 1 Y 1 A TRP 114 ? A TRP 76 6 1 Y 1 A LYS 115 ? A LYS 77 7 1 Y 1 A SER 116 ? A SER 78 8 1 Y 1 A THR 117 ? A THR 79 9 1 Y 1 A LEU 326 ? A LEU 288 10 1 Y 1 A ASN 327 ? A ASN 289 11 1 Y 1 A ILE 328 ? A ILE 290 12 1 Y 1 A GLY 329 ? A GLY 291 13 1 Y 1 A GLY 330 ? A GLY 292 14 1 Y 1 A THR 331 ? A THR 293 15 1 Y 1 A GLU 332 ? A GLU 294 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 RETINAL RET 3 'OLEIC ACID' OLA 4 'ZINC ION' ZN 5 water HOH #