HEADER TRANSFERASE 25-MAR-15 4YZN TITLE HUMANIZED ROCO4 BOUND TO COMPOUND 19 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SERINE/THREONINE-PROTEIN KINASE ROCO4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HUMANIZED ROCO4 KINASE DOMAIN, UNP RESIDUES 1019-1292; COMPND 5 SYNONYM: RAS OF COMPLEX PROTEINS AND C-TERMINAL OF ROC 4; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: ROCO4, DDB_G0288251; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: R3; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T1 NTEV KEYWDS ROCO-PROTEIN, KINASE, LRRK2, INHIBITOR, ROCO4, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.K.GILSBACH,A.C.MESSIAS,G.ITO,M.SATTLER,D.R.ALESSI,A.WITTINGHOFER, AUTHOR 2 A.KORTHOLT REVDAT 6 10-JAN-24 4YZN 1 REMARK REVDAT 5 19-OCT-16 4YZN 1 REMARK REVDAT 4 06-APR-16 4YZN 1 REVDAT 3 27-MAY-15 4YZN 1 JRNL REVDAT 2 20-MAY-15 4YZN 1 REVDAT 1 06-MAY-15 4YZN 0 JRNL AUTH B.K.GILSBACH,A.C.MESSIAS,G.ITO,M.SATTLER,D.R.ALESSI, JRNL AUTH 2 A.WITTINGHOFER,A.KORTHOLT JRNL TITL STRUCTURAL CHARACTERIZATION OF LRRK2 INHIBITORS. JRNL REF J.MED.CHEM. V. 58 3751 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 25897865 JRNL DOI 10.1021/JM5018779 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0093 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 45260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2262 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2740 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.2990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2161 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 214 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.313 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2312 ; 0.029 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3150 ; 2.613 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 7.999 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;36.470 ;24.124 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 407 ;15.093 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.212 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 344 ; 0.182 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1741 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4YZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99995 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45260 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 37.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4F0F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM 1,3 REMARK 280 -BIS(TRIS(HYDROXYMETHYL)METHYLAMINO)PROPANE PH 8.5 200MM NA/K REMARK 280 TARTRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 163.45000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 21.20000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 21.20000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 245.17500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 21.20000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 21.20000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.72500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 21.20000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 21.20000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 245.17500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 21.20000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 21.20000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.72500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 163.45000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1614 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1006 REMARK 465 ALA A 1007 REMARK 465 MET A 1008 REMARK 465 GLY A 1009 REMARK 465 GLY A 1010 REMARK 465 SER A 1011 REMARK 465 GLU A 1012 REMARK 465 PHE A 1013 REMARK 465 PRO A 1014 REMARK 465 LYS A 1015 REMARK 465 SER A 1016 REMARK 465 ARG A 1017 REMARK 465 LEU A 1018 REMARK 465 GLY A 1060 REMARK 465 ASP A 1061 REMARK 465 SER A 1062 REMARK 465 GLU A 1063 REMARK 465 GLY A 1064 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 1045 CA LYS A 1049 1.64 REMARK 500 O LEU A 1045 N LYS A 1049 1.69 REMARK 500 OG SER A 1237 O HOH A 1401 1.71 REMARK 500 O HOH A 1463 O HOH A 1553 1.73 REMARK 500 O GLU A 1070 N LYS A 1071 1.78 REMARK 500 O HOH A 1401 O HOH A 1561 1.99 REMARK 500 O HOH A 1604 O HOH A 1607 2.01 REMARK 500 O HOH A 1565 O HOH A 1580 2.01 REMARK 500 OD1 ASP A 1177 O HOH A 1402 2.06 REMARK 500 CD ARG A 1044 O LYS A 1049 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE2 PHE A 1072 CZ PHE A 1072 7555 0.51 REMARK 500 CE2 PHE A 1072 CE2 PHE A 1072 7555 0.87 REMARK 500 CE LYS A 1047 CE LYS A 1047 7465 1.13 REMARK 500 CD2 PHE A 1072 CZ PHE A 1072 7555 1.19 REMARK 500 CE LYS A 1047 NZ LYS A 1047 7465 1.33 REMARK 500 O HOH A 1591 O HOH A 1592 1455 1.60 REMARK 500 CD2 PHE A 1072 CE1 PHE A 1072 7555 1.64 REMARK 500 CE1 PHE A 1072 CE2 PHE A 1072 7555 1.74 REMARK 500 CZ PHE A 1072 CZ PHE A 1072 7555 1.89 REMARK 500 CD2 PHE A 1072 CE2 PHE A 1072 7555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ILE A1026 C GLU A1027 N 0.259 REMARK 500 GLU A1070 C LYS A1071 N -0.315 REMARK 500 LYS A1071 C PHE A1072 N -0.212 REMARK 500 ILE A1090 N ILE A1090 CA 0.169 REMARK 500 ILE A1090 N ILE A1090 CA 0.169 REMARK 500 LYS A1120 N LYS A1120 CA 0.153 REMARK 500 LYS A1120 N LYS A1120 CA 0.157 REMARK 500 LYS A1120 CA LYS A1120 C 0.201 REMARK 500 LYS A1120 CA LYS A1120 C 0.194 REMARK 500 LYS A1125 N LYS A1125 CA 0.181 REMARK 500 LYS A1125 N LYS A1125 CA 0.179 REMARK 500 LYS A1125 CA LYS A1125 C 0.217 REMARK 500 LYS A1125 CA LYS A1125 C 0.209 REMARK 500 MET A1143 N MET A1143 CA 0.221 REMARK 500 MET A1143 N MET A1143 CA 0.212 REMARK 500 MET A1143 CA MET A1143 C 0.165 REMARK 500 MET A1143 CA MET A1143 C 0.173 REMARK 500 ASP A1177 N ASP A1177 CA 0.178 REMARK 500 ASP A1177 N ASP A1177 CA 0.156 REMARK 500 ASP A1177 CA ASP A1177 C 0.190 REMARK 500 ASP A1177 CA ASP A1177 C 0.205 REMARK 500 SER A1181 N SER A1181 CA 0.196 REMARK 500 SER A1181 N SER A1181 CA 0.195 REMARK 500 SER A1181 CA SER A1181 C 0.172 REMARK 500 SER A1181 CA SER A1181 C 0.205 REMARK 500 LYS A1213 N LYS A1213 CA 0.195 REMARK 500 LYS A1213 N LYS A1213 CA 0.190 REMARK 500 LYS A1213 CA LYS A1213 C 0.199 REMARK 500 LYS A1213 CA LYS A1213 C 0.200 REMARK 500 ILE A1222 N ILE A1222 CA 0.195 REMARK 500 ILE A1222 N ILE A1222 CA 0.204 REMARK 500 ILE A1222 CA ILE A1222 C 0.193 REMARK 500 ILE A1222 CA ILE A1222 C 0.186 REMARK 500 GLU A1230 N GLU A1230 CA 0.209 REMARK 500 GLU A1230 N GLU A1230 CA 0.207 REMARK 500 SER A1273 N SER A1273 CA 0.230 REMARK 500 SER A1273 N SER A1273 CA 0.187 REMARK 500 SER A1273 CA SER A1273 C 0.193 REMARK 500 SER A1273 CA SER A1273 C 0.224 REMARK 500 HIS A1281 N HIS A1281 CA 0.120 REMARK 500 HIS A1281 N HIS A1281 CA 0.171 REMARK 500 HIS A1281 CA HIS A1281 C 0.229 REMARK 500 HIS A1281 CA HIS A1281 C 0.201 REMARK 500 SER A1283 N SER A1283 CA 0.223 REMARK 500 SER A1283 N SER A1283 CA 0.211 REMARK 500 SER A1283 CA SER A1283 C 0.213 REMARK 500 SER A1283 CA SER A1283 C 0.212 REMARK 500 LYS A1287 N LYS A1287 CA 0.204 REMARK 500 LYS A1287 N LYS A1287 CA 0.204 REMARK 500 LYS A1287 CA LYS A1287 C 0.185 REMARK 500 REMARK 500 THIS ENTRY HAS 52 BOND DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A1023 CB - CA - C ANGL. DEV. = 15.4 DEGREES REMARK 500 ASN A1024 N - CA - C ANGL. DEV. = -18.4 DEGREES REMARK 500 GLU A1070 CA - C - N ANGL. DEV. = 15.6 DEGREES REMARK 500 GLU A1070 O - C - N ANGL. DEV. = -14.9 DEGREES REMARK 500 ASN A1099 CB - CA - C ANGL. DEV. = -15.3 DEGREES REMARK 500 MET A1143 CG - SD - CE ANGL. DEV. = -10.2 DEGREES REMARK 500 MET A1143 CG - SD - CE ANGL. DEV. = -16.3 DEGREES REMARK 500 PRO A1148 C - N - CD ANGL. DEV. = 13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1024 -158.84 -148.89 REMARK 500 GLU A1025 -5.28 86.04 REMARK 500 ASP A1154 40.60 -141.99 REMARK 500 ASP A1177 80.43 65.82 REMARK 500 ASP A1177 81.06 65.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1613 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A1614 DISTANCE = 7.93 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4K5 A 1301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YZM RELATED DB: PDB REMARK 900 4YZM CONTAINS THE SAME PROTEIN WITH A DIFFERENT INHIBITOR DBREF 4YZN A 1019 1292 UNP Q6XHB2 ROCO4_DICDI 1019 1292 SEQADV 4YZN GLY A 1006 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN ALA A 1007 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN MET A 1008 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN GLY A 1009 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN GLY A 1010 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN SER A 1011 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN GLU A 1012 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN PHE A 1013 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN PRO A 1014 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN LYS A 1015 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN SER A 1016 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN ARG A 1017 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN LEU A 1018 UNP Q6XHB2 EXPRESSION TAG SEQADV 4YZN LEU A 1107 UNP Q6XHB2 PHE 1107 ENGINEERED MUTATION SEQADV 4YZN LEU A 1161 UNP Q6XHB2 PHE 1161 ENGINEERED MUTATION SEQRES 1 A 287 GLY ALA MET GLY GLY SER GLU PHE PRO LYS SER ARG LEU SEQRES 2 A 287 PRO THR LEU ALA ASP ASN GLU ILE GLU TYR GLU LYS GLN SEQRES 3 A 287 ILE GLY LYS GLY GLY PHE GLY LEU VAL HIS LYS GLY ARG SEQRES 4 A 287 LEU VAL LYS ASP LYS SER VAL VAL ALA ILE LYS SER LEU SEQRES 5 A 287 ILE LEU GLY ASP SER GLU GLY GLU THR GLU MET ILE GLU SEQRES 6 A 287 LYS PHE GLN GLU PHE GLN ARG GLU VAL PHE ILE MET SER SEQRES 7 A 287 ASN LEU ASN HIS PRO ASN ILE VAL LYS LEU TYR GLY LEU SEQRES 8 A 287 MET HIS ASN PRO PRO ARG MET VAL MET GLU LEU VAL PRO SEQRES 9 A 287 CYS GLY ASP LEU TYR HIS ARG LEU LEU ASP LYS ALA HIS SEQRES 10 A 287 PRO ILE LYS TRP SER VAL LYS LEU ARG LEU MET LEU ASP SEQRES 11 A 287 ILE ALA LEU GLY ILE GLU TYR MET GLN ASN GLN ASN PRO SEQRES 12 A 287 PRO ILE VAL HIS ARG ASP LEU ARG SER PRO ASN ILE LEU SEQRES 13 A 287 LEU GLN SER LEU ASP GLU ASN ALA PRO VAL CYS ALA LYS SEQRES 14 A 287 VAL ALA ASP PHE GLY LEU SER GLN GLN SER VAL HIS SER SEQRES 15 A 287 VAL SER GLY LEU LEU GLY ASN PHE GLN TRP MET ALA PRO SEQRES 16 A 287 GLU THR ILE GLY ALA GLU GLU GLU SER TYR THR GLU LYS SEQRES 17 A 287 ALA ASP THR TYR SER PHE ALA MET ILE LEU TYR THR ILE SEQRES 18 A 287 LEU THR GLY GLU GLY PRO PHE ASP GLU TYR SER TYR GLY SEQRES 19 A 287 LYS ILE LYS PHE ILE ASN MET ILE ARG GLU GLU GLY LEU SEQRES 20 A 287 ARG PRO THR ILE PRO GLU ASP CYS PRO PRO ARG LEU ARG SEQRES 21 A 287 ASN VAL ILE GLU LEU CYS TRP SER GLY ASP PRO LYS LYS SEQRES 22 A 287 ARG PRO HIS PHE SER TYR ILE VAL LYS GLU LEU SER GLU SEQRES 23 A 287 LEU HET 4K5 A1301 32 HETNAM 4K5 (4-{[4-(CYCLOPROPYLAMINO)-5-(TRIFLUOROMETHYL)PYRIMIDIN- HETNAM 2 4K5 2-YL]AMINO}-2-FLUORO-5-METHOXYPHENYL)(MORPHOLIN-4-YL) HETNAM 3 4K5 METHANONE FORMUL 2 4K5 C20 H21 F4 N5 O3 FORMUL 3 HOH *214(H2 O) HELIX 1 AA1 THR A 1066 SER A 1083 1 18 HELIX 2 AA2 ASP A 1112 LEU A 1118 1 7 HELIX 3 AA3 LYS A 1125 ASN A 1145 1 21 HELIX 4 AA4 ARG A 1156 PRO A 1158 5 3 HELIX 5 AA5 ALA A 1199 GLY A 1204 1 6 HELIX 6 AA6 GLU A 1212 GLY A 1229 1 18 HELIX 7 AA7 GLY A 1239 GLU A 1250 1 12 HELIX 8 AA8 PRO A 1261 TRP A 1272 1 12 HELIX 9 AA9 ASP A 1275 ARG A 1279 5 5 HELIX 10 AB1 HIS A 1281 GLU A 1291 1 11 SHEET 1 AA1 5 ILE A1026 LYS A1034 0 SHEET 2 AA1 5 LEU A1039 LEU A1045 -1 O LYS A1042 N LYS A1030 SHEET 3 AA1 5 VAL A1051 SER A1056 -1 O VAL A1052 N GLY A1043 SHEET 4 AA1 5 ARG A1102 MET A1105 -1 O MET A1105 N ALA A1053 SHEET 5 AA1 5 LEU A1093 MET A1097 -1 N TYR A1094 O VAL A1104 SHEET 1 AA2 2 ILE A1150 VAL A1151 0 SHEET 2 AA2 2 GLN A1182 GLN A1183 -1 O GLN A1182 N VAL A1151 SHEET 1 AA3 2 ILE A1160 LEU A1162 0 SHEET 2 AA3 2 ALA A1173 VAL A1175 -1 O LYS A1174 N LEU A1161 CISPEP 1 PRO A 1100 PRO A 1101 0 2.82 CISPEP 2 ASN A 1147 PRO A 1148 0 -5.53 SITE 1 AC1 12 ILE A1032 VAL A1040 ALA A1053 MET A1105 SITE 2 AC1 12 GLU A1106 VAL A1108 PRO A1109 GLY A1111 SITE 3 AC1 12 LEU A1161 ASP A1177 HOH A1405 HOH A1444 CRYST1 42.400 42.400 326.900 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023585 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003059 0.00000