HEADER HYDROLASE 25-MAR-15 4YZP TITLE CRYSTAL STRUCTURE OF A TRI-MODULAR GH5 (SUBFAMILY 4) ENDO-BETA-1, 4- TITLE 2 GLUCANASE FROM BACILLUS LICHENIFORMIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULOSE HYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDO-BETA-1,4-GLUCANASE; COMPND 5 EC: 3.2.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS; SOURCE 3 ORGANISM_TAXID: 1402; SOURCE 4 ATCC: 14580; SOURCE 5 GENE: CEL5C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETTRXA-1A/LIC KEYWDS ENDOGLUCANASE, GH5, TRI-MODULAR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.V.LIBERATO,A.POPOV,I.POLIKARPOV REVDAT 7 27-SEP-23 4YZP 1 REMARK REVDAT 6 01-JAN-20 4YZP 1 REMARK REVDAT 5 17-APR-19 4YZP 1 REMARK REVDAT 4 22-NOV-17 4YZP 1 REMARK REVDAT 3 08-FEB-17 4YZP 1 JRNL REVDAT 2 02-NOV-16 4YZP 1 JRNL REVDAT 1 07-SEP-16 4YZP 0 JRNL AUTH M.V.LIBERATO,R.L.SILVEIRA,E.T.PRATES,E.A.DE ARAUJO, JRNL AUTH 2 V.O.PELLEGRINI,C.M.CAMILO,M.A.KADOWAKI,M.DE O.NETO,A.POPOV, JRNL AUTH 3 M.S.SKAF,I.POLIKARPOV JRNL TITL MOLECULAR CHARACTERIZATION OF A FAMILY 5 GLYCOSIDE HYDROLASE JRNL TITL 2 SUGGESTS AN INDUCED-FIT ENZYMATIC MECHANISM. JRNL REF SCI REP V. 6 23473 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 27032335 JRNL DOI 10.1038/SREP23473 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9-1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 51971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 64.1800 - 4.4549 0.88 2848 136 0.1480 0.1718 REMARK 3 2 4.4549 - 3.5361 0.89 2719 133 0.1321 0.1401 REMARK 3 3 3.5361 - 3.0891 0.95 2830 152 0.1557 0.1829 REMARK 3 4 3.0891 - 2.8067 0.89 2648 127 0.1592 0.1882 REMARK 3 5 2.8067 - 2.6055 0.94 2785 142 0.1741 0.2295 REMARK 3 6 2.6055 - 2.4519 0.93 2758 134 0.1708 0.2143 REMARK 3 7 2.4519 - 2.3291 0.94 2759 136 0.1624 0.1768 REMARK 3 8 2.3291 - 2.2277 0.87 2544 146 0.1741 0.2132 REMARK 3 9 2.2277 - 2.1419 0.93 2736 148 0.1753 0.2299 REMARK 3 10 2.1419 - 2.0680 0.96 2779 152 0.1674 0.2010 REMARK 3 11 2.0680 - 2.0033 0.96 2827 142 0.1790 0.2463 REMARK 3 12 2.0033 - 1.9461 0.96 2773 154 0.1797 0.2144 REMARK 3 13 1.9461 - 1.8948 0.93 2706 141 0.2078 0.2446 REMARK 3 14 1.8948 - 1.8486 0.90 2607 150 0.1931 0.2414 REMARK 3 15 1.8486 - 1.8066 0.95 2782 146 0.2045 0.2367 REMARK 3 16 1.8066 - 1.7681 0.96 2800 140 0.2220 0.2369 REMARK 3 17 1.7681 - 1.7327 0.95 2746 143 0.2366 0.2709 REMARK 3 18 1.7327 - 1.7000 0.95 2747 155 0.2421 0.2633 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4153 REMARK 3 ANGLE : 1.055 5676 REMARK 3 CHIRALITY : 0.041 622 REMARK 3 PLANARITY : 0.005 730 REMARK 3 DIHEDRAL : 12.230 1486 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 190.5301 155.3535 131.8656 REMARK 3 T TENSOR REMARK 3 T11: 0.0904 T22: 0.1089 REMARK 3 T33: 0.1026 T12: -0.0090 REMARK 3 T13: -0.0112 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.8656 L22: 0.9928 REMARK 3 L33: 0.7035 L12: -0.0928 REMARK 3 L13: -0.0659 L23: 0.1016 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: -0.0206 S13: 0.0234 REMARK 3 S21: 0.0331 S22: -0.0157 S23: 0.0292 REMARK 3 S31: -0.0102 S32: 0.0447 S33: 0.0217 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 448 ) REMARK 3 ORIGIN FOR THE GROUP (A): 209.5848 135.3669 112.5662 REMARK 3 T TENSOR REMARK 3 T11: 0.1966 T22: 0.2510 REMARK 3 T33: 0.1876 T12: 0.0599 REMARK 3 T13: -0.0176 T23: -0.0394 REMARK 3 L TENSOR REMARK 3 L11: 0.3897 L22: 0.6308 REMARK 3 L33: 0.6170 L12: -0.0083 REMARK 3 L13: -0.0242 L23: 0.2537 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: 0.1202 S13: -0.1472 REMARK 3 S21: -0.0465 S22: 0.0205 S23: 0.0085 REMARK 3 S31: 0.1536 S32: 0.1617 S33: -0.0282 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 449 THROUGH 532 ) REMARK 3 ORIGIN FOR THE GROUP (A): 186.2842 123.6770 119.4230 REMARK 3 T TENSOR REMARK 3 T11: 0.3047 T22: 0.1968 REMARK 3 T33: 0.3695 T12: -0.0141 REMARK 3 T13: 0.0016 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.0830 L22: 1.1106 REMARK 3 L33: 1.6041 L12: -0.2090 REMARK 3 L13: -0.0285 L23: -0.2034 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: -0.0319 S13: -0.1026 REMARK 3 S21: 0.1497 S22: 0.0413 S23: 0.4034 REMARK 3 S31: 0.3624 S32: -0.0486 S33: -0.0822 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4YZP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208364. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9724 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.1.3, IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52079 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 64.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.55200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.7 REMARK 200 STARTING MODEL: 3NDY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5 % PEG 4000, 14 % ISOPROPANOL AND REMARK 280 0.1 M SODIUM CITRATE, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.31500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.35000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.35000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 90.47250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.35000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.35000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.15750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 90.47250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.15750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 60.31500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 784 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 956 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 992 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1150 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 ALA A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 ALA A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 ALA A 11 REMARK 465 LYS A 12 REMARK 465 GLN A 13 REMARK 465 GLU A 14 REMARK 465 LYS A 15 REMARK 465 GLN A 16 REMARK 465 SER A 17 REMARK 465 ILE A 18 REMARK 465 ILE A 19 REMARK 465 ASN A 400 REMARK 465 GLY A 401 REMARK 465 ALA A 402 REMARK 465 GLY A 403 REMARK 465 PRO A 533 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 139 NZ REMARK 470 GLU A 150 CD OE1 OE2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 GLU A 208 CD OE1 OE2 REMARK 470 GLU A 245 CD OE1 OE2 REMARK 470 LYS A 337 CE NZ REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 GLN A 357 CG CD OE1 NE2 REMARK 470 SER A 370 OG REMARK 470 GLU A 371 CG CD OE1 OE2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 ASN A 383 CG OD1 ND2 REMARK 470 LYS A 386 CE NZ REMARK 470 LYS A 391 CE NZ REMARK 470 LYS A 397 CG CD CE NZ REMARK 470 GLN A 404 CG CD OE1 NE2 REMARK 470 LYS A 432 CG CD CE NZ REMARK 470 GLU A 434 CG CD OE1 OE2 REMARK 470 GLU A 437 CG CD OE1 OE2 REMARK 470 ILE A 440 CG1 CG2 CD1 REMARK 470 SER A 443 OG REMARK 470 SER A 446 OG REMARK 470 ARG A 472 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 476 CG CD OE1 OE2 REMARK 470 GLU A 477 CD OE1 OE2 REMARK 470 LYS A 494 CD CE NZ REMARK 470 LYS A 506 CD CE NZ REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 LYS A 521 CD CE NZ REMARK 470 LYS A 528 CD CE NZ REMARK 470 LYS A 530 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 981 O HOH A 1076 1.86 REMARK 500 O HOH A 682 O HOH A 774 1.86 REMARK 500 ND2 ASN A 147 O HOH A 601 1.90 REMARK 500 OH TYR A 166 O HOH A 602 1.95 REMARK 500 OD1 ASP A 430 O HOH A 603 2.00 REMARK 500 O HOH A 1161 O HOH A 1192 2.02 REMARK 500 O HOH A 1007 O HOH A 1058 2.04 REMARK 500 N GLN A 404 O HOH A 604 2.04 REMARK 500 O HOH A 873 O HOH A 990 2.07 REMARK 500 O HOH A 640 O HOH A 897 2.09 REMARK 500 O HOH A 706 O HOH A 1000 2.10 REMARK 500 O HOH A 1060 O HOH A 1178 2.11 REMARK 500 O HOH A 704 O HOH A 1107 2.12 REMARK 500 O HOH A 704 O HOH A 771 2.14 REMARK 500 N ALA A 444 O HOH A 605 2.14 REMARK 500 O SER A 441 O HOH A 605 2.15 REMARK 500 N THR A 20 O HOH A 606 2.17 REMARK 500 O HOH A 1047 O HOH A 1091 2.17 REMARK 500 O HOH A 1128 O HOH A 1168 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 618 O HOH A 1018 8997 1.96 REMARK 500 O HOH A 856 O HOH A 1037 4585 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 37 -90.24 -125.78 REMARK 500 TRP A 47 -138.59 -104.33 REMARK 500 ASP A 75 -71.42 -23.71 REMARK 500 HIS A 113 -96.18 -110.60 REMARK 500 TRP A 119 -24.79 -151.09 REMARK 500 SER A 149 153.35 -47.44 REMARK 500 GLU A 159 61.06 36.59 REMARK 500 GLU A 197 18.81 58.38 REMARK 500 GLN A 307 -76.37 -129.09 REMARK 500 LYS A 369 -116.49 58.80 REMARK 500 SER A 446 92.28 -160.91 REMARK 500 ALA A 461 -60.91 -104.93 REMARK 500 ASP A 488 -51.09 77.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1192 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A1193 DISTANCE = 6.45 ANGSTROMS DBREF 4YZP A 1 533 UNP D1L8C7 D1L8C7_BACLI 9 541 SEQADV 4YZP GLY A -2 UNP D1L8C7 EXPRESSION TAG SEQADV 4YZP ALA A -1 UNP D1L8C7 EXPRESSION TAG SEQADV 4YZP MET A 0 UNP D1L8C7 EXPRESSION TAG SEQRES 1 A 536 GLY ALA MET VAL PRO LYS ALA SER GLY THR SER GLY PRO SEQRES 2 A 536 ALA LYS GLN GLU LYS GLN SER ILE ILE THR PRO ALA ASP SEQRES 3 A 536 LEU LEU GLU ASN MET SER PRO GLY TRP ASN LEU GLY ASN SEQRES 4 A 536 THR LEU ASP ALA VAL PRO THR GLU GLY SER TRP ASN ASN SEQRES 5 A 536 PRO PRO VAL ARG GLU HIS THR PHE ASP ASP ILE ARG ASP SEQRES 6 A 536 ALA GLY PHE LYS SER VAL ARG ILE PRO VAL THR TRP ASP SEQRES 7 A 536 SER HIS ILE GLY SER ALA PRO GLU TYR PRO ILE ASP THR SEQRES 8 A 536 ASP TRP MET ASN ARG VAL GLU GLU VAL THR ASP TRP ALA SEQRES 9 A 536 LEU GLU ARG GLU PHE TYR VAL VAL LEU ASN ILE HIS HIS SEQRES 10 A 536 ASP SER TRP LEU TRP ILE SER ARG MET GLY ASN SER GLN SEQRES 11 A 536 GLN GLU THR LEU ASP LYS LEU GLY LYS VAL TRP LYS GLN SEQRES 12 A 536 ILE ALA GLU ARG PHE LYS ASN LYS SER GLU ARG LEU LEU SEQRES 13 A 536 PHE GLU ILE VAL ASN GLU PRO THR GLY MET SER ALA TYR SEQRES 14 A 536 GLN MET ASN LEU LEU ASN ARG GLU MET LEU ASN ILE ILE SEQRES 15 A 536 ARG SER THR GLY GLY LYS ASN GLY GLN ARG LEU VAL ILE SEQRES 16 A 536 VAL GLY GLY LEU GLU ASP ASN LYS ASP GLU LEU LEU HIS SEQRES 17 A 536 SER PHE GLU PRO PRO ASP ASP ASP ARG ILE VAL LEU THR SEQRES 18 A 536 TYR HIS TYR TYR SER PRO TRP ASP TYR VAL SER ASN TRP SEQRES 19 A 536 TRP GLY ARG THR THR TRP GLY SER ALA ALA GLU ILE SER SEQRES 20 A 536 GLU MET GLU GLU ASP ILE LYS PRO VAL TYR GLU LYS PHE SEQRES 21 A 536 VAL ARG GLU GLY TYR PRO VAL ILE ILE GLY GLU TYR GLY SEQRES 22 A 536 THR LEU GLY ALA ASN GLU LYS HIS SER LYS TRP LEU TYR SEQRES 23 A 536 HIS ASP THR PHE VAL ARG LEU ALA HIS LYS TYR GLN MET SEQRES 24 A 536 VAL PRO MET TRP TRP ASP ASN GLY ASN ASP GLN PHE ASP SEQRES 25 A 536 ARG ALA GLU ARG GLN TRP ARG ASP PRO VAL VAL LYS GLU SEQRES 26 A 536 ILE VAL ILE GLN ALA GLY ARG GLY VAL PRO ASN ALA ILE SEQRES 27 A 536 ILE LYS PRO ALA ASP LEU PHE ILE LYS LYS GLY GLN SER SEQRES 28 A 536 ILE SER ASP GLN THR VAL ASP ILE GLN LEU ASN GLY ASN SEQRES 29 A 536 VAL LEU THR GLY ILE TYR GLN LYS SER GLU PRO LEU LYS SEQRES 30 A 536 GLU GLY SER ASP TYR THR VAL ASP ASN ALA GLY LYS THR SEQRES 31 A 536 VAL SER ILE LYS ALA SER CYS LEU ALA LYS LEU LEU ASN SEQRES 32 A 536 GLY ALA GLY GLN PRO GLY VAL LYS ALA GLN LEU THR PHE SEQRES 33 A 536 THR PHE HIS LYS GLY ALA SER GLN VAL MET ASP ILE ILE SEQRES 34 A 536 LEU TYR ASP ASP PRO LYS LEU GLU LYS SER GLU PHE THR SEQRES 35 A 536 ILE SER GLN SER ALA ILE SER GLY ASP LEU LYS ILE PRO SEQRES 36 A 536 ALA SER LEU ASN GLY THR LYS LEU ALA THR VAL LYS GLY SEQRES 37 A 536 VAL VAL ASP SER THR GLY ARG PRO VAL LEU GLU GLU VAL SEQRES 38 A 536 TRP SER TRP THR PRO TYR LEU ASN TYR ASP GLU ASP PHE SEQRES 39 A 536 TYR GLU LYS ASP GLY ASP LEU TYR LEU LYS GLU ARG VAL SEQRES 40 A 536 LEU LYS TYR LEU LYS SER ASP SER THR PHE THR PHE GLU SEQRES 41 A 536 LEU TRP PRO LYS GLY VAL GLU ALA VAL VAL LYS VAL LYS SEQRES 42 A 536 ILE THR PRO FORMUL 2 HOH *593(H2 O) HELIX 1 AA1 THR A 20 SER A 29 1 10 HELIX 2 AA2 ARG A 53 GLY A 64 1 12 HELIX 3 AA3 TRP A 74 ILE A 78 5 5 HELIX 4 AA4 ASP A 87 ARG A 104 1 18 HELIX 5 AA5 HIS A 114 TRP A 119 1 6 HELIX 6 AA6 ILE A 120 GLY A 124 5 5 HELIX 7 AA7 SER A 126 LYS A 146 1 21 HELIX 8 AA8 SER A 164 THR A 182 1 19 HELIX 9 AA9 GLY A 183 GLN A 188 5 6 HELIX 10 AB1 GLY A 195 ASP A 198 5 4 HELIX 11 AB2 ASN A 199 SER A 206 1 8 HELIX 12 AB3 PRO A 224 ASN A 230 1 7 HELIX 13 AB4 SER A 239 PHE A 257 1 19 HELIX 14 AB5 VAL A 258 GLY A 261 5 4 HELIX 15 AB6 GLU A 276 TYR A 294 1 19 HELIX 16 AB7 ASP A 317 GLY A 328 1 12 HELIX 17 AB8 LYS A 391 LEU A 399 1 9 HELIX 18 AB9 LYS A 501 TYR A 507 1 7 SHEET 1 AA1 9 GLY A 31 ASN A 33 0 SHEET 2 AA1 9 SER A 67 ILE A 70 1 O ARG A 69 N TRP A 32 SHEET 3 AA1 9 TYR A 107 ASN A 111 1 O VAL A 109 N ILE A 70 SHEET 4 AA1 9 LEU A 152 GLU A 155 1 O LEU A 153 N VAL A 108 SHEET 5 AA1 9 VAL A 191 VAL A 193 1 O ILE A 192 N PHE A 154 SHEET 6 AA1 9 ILE A 215 TYR A 221 1 O VAL A 216 N VAL A 193 SHEET 7 AA1 9 VAL A 264 TYR A 269 1 O ILE A 265 N LEU A 217 SHEET 8 AA1 9 MET A 296 TRP A 300 1 O VAL A 297 N ILE A 266 SHEET 9 AA1 9 GLY A 31 ASN A 33 1 N GLY A 31 O PRO A 298 SHEET 1 AA2 2 PHE A 308 ASP A 309 0 SHEET 2 AA2 2 GLN A 314 TRP A 315 -1 O GLN A 314 N ASP A 309 SHEET 1 AA3 4 ILE A 335 LYS A 337 0 SHEET 2 AA3 4 GLN A 352 GLN A 357 -1 O GLN A 357 N ILE A 335 SHEET 3 AA3 4 THR A 387 ILE A 390 -1 O VAL A 388 N VAL A 354 SHEET 4 AA3 4 TYR A 379 VAL A 381 -1 N THR A 380 O SER A 389 SHEET 1 AA4 5 ASP A 340 LYS A 344 0 SHEET 2 AA4 5 GLN A 421 TYR A 428 1 O ASP A 424 N LEU A 341 SHEET 3 AA4 5 GLY A 406 PHE A 415 -1 N PHE A 413 O GLN A 421 SHEET 4 AA4 5 LEU A 363 GLN A 368 -1 N TYR A 367 O THR A 412 SHEET 5 AA4 5 GLU A 371 PRO A 372 -1 O GLU A 371 N GLN A 368 SHEET 1 AA5 2 LYS A 432 LEU A 433 0 SHEET 2 AA5 2 ALA A 453 SER A 454 -1 O SER A 454 N LYS A 432 SHEET 1 AA6 4 GLU A 437 SER A 441 0 SHEET 2 AA6 4 VAL A 523 THR A 532 1 O LYS A 530 N PHE A 438 SHEET 3 AA6 4 SER A 512 TRP A 519 -1 N PHE A 514 O VAL A 527 SHEET 4 AA6 4 LYS A 459 VAL A 467 -1 N VAL A 466 O THR A 513 SHEET 1 AA7 3 LEU A 449 ILE A 451 0 SHEET 2 AA7 3 ASP A 497 LEU A 500 -1 O LEU A 500 N LEU A 449 SHEET 3 AA7 3 PHE A 491 LYS A 494 -1 N LYS A 494 O ASP A 497 CISPEP 1 SER A 29 PRO A 30 0 1.54 CISPEP 2 VAL A 41 PRO A 42 0 6.44 CISPEP 3 ALA A 81 PRO A 82 0 4.47 CISPEP 4 SER A 223 PRO A 224 0 -7.74 CISPEP 5 LYS A 337 PRO A 338 0 2.29 CISPEP 6 TRP A 519 PRO A 520 0 3.07 CRYST1 90.700 90.700 120.630 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008290 0.00000