HEADER ISOMERASE/ISOMERASE INHIBITOR 26-MAR-15 4Z15 TITLE MIF IN COMPLEX WITH 3-(2-FURYLMETHYL)-2-THIOXO-1,3-THIAZOLAN-4-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: MIF,GLYCOSYLATION-INHIBITING FACTOR,GIF,L-DOPACHROME COMPND 5 ISOMERASE,L-DOPACHROME TAUTOMERASE,PHENYLPYRUVATE TAUTOMERASE; COMPND 6 EC: 5.3.2.1,5.3.3.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MIF, GLIF, MMIF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS COVALENT INHIBITOR, PROTEIN SURFACE MODIFICATION, ISOMERASE-ISOMERASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.Y.CHO REVDAT 3 27-SEP-23 4Z15 1 REMARK REVDAT 2 04-JAN-17 4Z15 1 JRNL REVDAT 1 28-SEP-16 4Z15 0 JRNL AUTH A.K.SINGH,G.PANTOURIS,S.BOROSCH,S.ROJANASTHIEN,T.Y.CHO JRNL TITL STRUCTURAL BASIS FOR DECREASED INDUCTION OF CLASS IB JRNL TITL 2 PI3-KINASES EXPRESSION BY MIF INHIBITORS. JRNL REF J. CELL. MOL. MED. V. 21 142 2017 JRNL REFN ISSN 1582-4934 JRNL PMID 27619729 JRNL DOI 10.1111/JCMM.12949 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 50956 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2734 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2564 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 276 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.355 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2644 ; 0.026 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2418 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3604 ; 2.122 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5552 ; 0.965 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 340 ; 6.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;40.399 ;24.510 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 375 ;10.716 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.927 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 405 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3066 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 606 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1366 ; 1.741 ; 1.776 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1365 ; 1.742 ; 1.777 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1695 ; 2.288 ; 2.671 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1696 ; 2.287 ; 2.671 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1278 ; 2.998 ; 2.037 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1267 ; 2.912 ; 2.010 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1890 ; 4.080 ; 2.917 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3073 ; 5.418 ;16.102 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2935 ; 5.280 ;15.552 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Z15 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0809 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54348 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 26.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06200 REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1MIF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, AMMONIUM SULFATE, ISOPROPANOL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.84000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.01500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.01500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.84000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE POLYPEPTIDE, MACROPHAGE MIGRATION INHIBITORY FACTOR, WITH PRO REMARK 400 AT THE N-TERMINUS WAS INCUBATED WITH 3-(2-FURYLMETHYL)-2-THIOXO-1,3- REMARK 400 THIAZOLAN-4-ONE TO PRODUCE THE MODIFIED N-TERMINAL RESIDUE (4N8) REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 12 CD NE CZ NH1 NH2 REMARK 470 GLN A 29 CG CD OE1 NE2 REMARK 470 LEU A 47 CG CD1 CD2 REMARK 470 GLU A 55 CG CD OE1 OE2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 GLN A 72 CG CD OE1 NE2 REMARK 470 LYS A 78 CE NZ REMARK 470 ARG A 89 CD NE CZ NH1 NH2 REMARK 470 ARG B 12 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 33 CE NZ REMARK 470 GLN B 36 CG CD OE1 NE2 REMARK 470 LEU B 47 CD1 CD2 REMARK 470 LYS B 67 CG CD CE NZ REMARK 470 ARG B 89 CD NE CZ NH1 NH2 REMARK 470 LEU C 47 CD1 CD2 REMARK 470 LYS C 67 CG CD CE NZ REMARK 470 ARG C 89 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB LYS A 67 O HOH A 306 1.98 REMARK 500 NH2 ARG A 74 O HOH A 301 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 48 SD MET A 48 CE -0.388 REMARK 500 ASN B 7 CG ASN B 7 OD1 -0.133 REMARK 500 SER C 61 CB SER C 61 OG -0.108 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 93 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 93 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG B 94 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 94 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP C 93 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 109 134.71 -172.64 REMARK 500 SER A 112 -155.94 -149.86 REMARK 500 SER C 112 -156.94 -150.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 378 DISTANCE = 6.50 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z1U RELATED DB: PDB REMARK 900 RELATED ID: 4Z1T RELATED DB: PDB DBREF 4Z15 A 2 115 UNP P14174 MIF_HUMAN 2 115 DBREF 4Z15 B 2 115 UNP P14174 MIF_HUMAN 2 115 DBREF 4Z15 C 2 115 UNP P14174 MIF_HUMAN 2 115 SEQRES 1 A 114 4N8 MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 A 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 A 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 A 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 A 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 A 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 A 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 A 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 A 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA SEQRES 1 B 114 4N8 MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 B 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 B 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 B 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 B 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 B 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 B 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 B 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 B 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA SEQRES 1 C 114 4N8 MET PHE ILE VAL ASN THR ASN VAL PRO ARG ALA SER SEQRES 2 C 114 VAL PRO ASP GLY PHE LEU SER GLU LEU THR GLN GLN LEU SEQRES 3 C 114 ALA GLN ALA THR GLY LYS PRO PRO GLN TYR ILE ALA VAL SEQRES 4 C 114 HIS VAL VAL PRO ASP GLN LEU MET ALA PHE GLY GLY SER SEQRES 5 C 114 SER GLU PRO CYS ALA LEU CYS SER LEU HIS SER ILE GLY SEQRES 6 C 114 LYS ILE GLY GLY ALA GLN ASN ARG SER TYR SER LYS LEU SEQRES 7 C 114 LEU CYS GLY LEU LEU ALA GLU ARG LEU ARG ILE SER PRO SEQRES 8 C 114 ASP ARG VAL TYR ILE ASN TYR TYR ASP MET ASN ALA ALA SEQRES 9 C 114 ASN VAL GLY TRP ASN ASN SER THR PHE ALA MODRES 4Z15 4N8 A 2 PRO MODIFIED RESIDUE MODRES 4Z15 4N8 B 2 PRO MODIFIED RESIDUE MODRES 4Z15 4N8 C 2 PRO MODIFIED RESIDUE HET 4N8 A 2 16 HET 4N8 B 2 16 HET 4N8 C 2 16 HET IPA A 201 4 HET SO4 A 202 5 HET SO4 B 201 5 HET SO4 C 201 5 HETNAM 4N8 1-[(FURAN-2-YLMETHYL)CARBAMOTHIOYL]-L-PROLINE HETNAM IPA ISOPROPYL ALCOHOL HETNAM SO4 SULFATE ION HETSYN IPA 2-PROPANOL FORMUL 1 4N8 3(C11 H14 N2 O3 S) FORMUL 4 IPA C3 H8 O FORMUL 5 SO4 3(O4 S 2-) FORMUL 8 HOH *276(H2 O) HELIX 1 AA1 PRO A 11 VAL A 15 5 5 HELIX 2 AA2 GLY A 18 GLY A 32 1 15 HELIX 3 AA3 PRO A 34 TYR A 37 5 4 HELIX 4 AA4 GLY A 69 ARG A 89 1 21 HELIX 5 AA5 SER A 91 ASP A 93 5 3 HELIX 6 AA6 ASN A 103 ALA A 105 5 3 HELIX 7 AA7 PRO B 11 VAL B 15 5 5 HELIX 8 AA8 GLY B 18 GLY B 32 1 15 HELIX 9 AA9 PRO B 34 TYR B 37 5 4 HELIX 10 AB1 GLY B 69 ARG B 89 1 21 HELIX 11 AB2 SER B 91 ASP B 93 5 3 HELIX 12 AB3 ASN B 103 ALA B 105 5 3 HELIX 13 AB4 PRO C 11 VAL C 15 5 5 HELIX 14 AB5 GLY C 18 GLY C 32 1 15 HELIX 15 AB6 PRO C 34 TYR C 37 5 4 HELIX 16 AB7 GLY C 69 ARG C 89 1 21 HELIX 17 AB8 SER C 91 ASP C 93 5 3 HELIX 18 AB9 ASN C 103 ALA C 105 5 3 SHEET 1 AA1 7 SER B 112 THR B 113 0 SHEET 2 AA1 7 VAL B 107 TRP B 109 -1 N TRP B 109 O SER B 112 SHEET 3 AA1 7 VAL A 95 ASP A 101 -1 N ILE A 97 O GLY B 108 SHEET 4 AA1 7 ALA A 58 SER A 64 1 N LEU A 62 O TYR A 100 SHEET 5 AA1 7 PHE A 4 THR A 8 -1 N ILE A 5 O SER A 61 SHEET 6 AA1 7 ALA A 39 VAL A 43 1 O VAL A 43 N VAL A 6 SHEET 7 AA1 7 LEU C 47 PHE C 50 -1 O ALA C 49 N VAL A 40 SHEET 1 AA2 7 LEU A 47 PHE A 50 0 SHEET 2 AA2 7 ALA B 39 VAL B 43 -1 O VAL B 40 N ALA A 49 SHEET 3 AA2 7 PHE B 4 THR B 8 1 N VAL B 6 O VAL B 43 SHEET 4 AA2 7 ALA B 58 SER B 64 -1 O LEU B 59 N ASN B 7 SHEET 5 AA2 7 VAL B 95 ASP B 101 1 O ASN B 98 N CYS B 60 SHEET 6 AA2 7 VAL C 107 TRP C 109 -1 O GLY C 108 N ILE B 97 SHEET 7 AA2 7 SER C 112 THR C 113 -1 O SER C 112 N TRP C 109 SHEET 1 AA3 7 SER A 112 THR A 113 0 SHEET 2 AA3 7 VAL A 107 TRP A 109 -1 N TRP A 109 O SER A 112 SHEET 3 AA3 7 VAL C 95 ASP C 101 -1 O ILE C 97 N GLY A 108 SHEET 4 AA3 7 ALA C 58 SER C 64 1 N CYS C 60 O ASN C 98 SHEET 5 AA3 7 PHE C 4 THR C 8 -1 N ASN C 7 O LEU C 59 SHEET 6 AA3 7 ALA C 39 VAL C 43 1 O VAL C 43 N VAL C 6 SHEET 7 AA3 7 LEU B 47 PHE B 50 -1 N LEU B 47 O VAL C 42 LINK C 4N8 A 2 N MET A 3 1555 1555 1.34 LINK C 4N8 B 2 N MET B 3 1555 1555 1.35 LINK C 4N8 C 2 N MET C 3 1555 1555 1.35 SITE 1 AC1 6 GLN A 36 TYR A 37 TRP A 109 GLY B 51 SITE 2 AC1 6 HOH C 329 HOH C 344 SITE 1 AC2 3 GLY A 66 HOH A 334 ARG C 87 SITE 1 AC3 5 4N8 B 2 TYR B 37 ILE B 65 PHE B 114 SITE 2 AC3 5 GLU C 55 SITE 1 AC4 4 ARG B 87 GLY C 66 LYS C 67 HOH C 308 CRYST1 67.680 68.060 88.030 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014775 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011360 0.00000 HETATM 1 C 4N8 A 2 21.753 5.492 -18.263 1.00 18.86 C HETATM 2 N 4N8 A 2 22.678 7.783 -18.347 1.00 20.13 N HETATM 3 CA 4N8 A 2 21.931 6.828 -17.560 1.00 19.23 C HETATM 4 CB 4N8 A 2 20.598 7.486 -17.226 1.00 20.36 C HETATM 5 CG 4N8 A 2 20.422 8.532 -18.345 1.00 20.54 C HETATM 6 CD 4N8 A 2 21.841 8.954 -18.609 1.00 20.11 C HETATM 7 S1 4N8 A 2 24.716 8.720 -19.663 1.00 20.80 S HETATM 8 C1 4N8 A 2 23.933 7.608 -18.725 1.00 20.45 C HETATM 9 N1 4N8 A 2 24.576 6.486 -18.383 1.00 20.97 N HETATM 10 C2 4N8 A 2 25.869 5.997 -18.854 1.00 19.94 C HETATM 11 C4 4N8 A 2 26.343 4.979 -17.843 1.00 16.73 C HETATM 12 O1 4N8 A 2 26.598 5.345 -16.543 1.00 17.44 O HETATM 13 C7 4N8 A 2 27.072 4.226 -15.896 1.00 15.27 C HETATM 14 C6 4N8 A 2 27.083 3.188 -16.820 1.00 15.69 C HETATM 15 C5 4N8 A 2 26.605 3.655 -18.073 1.00 17.09 C HETATM 16 O2 4N8 A 2 21.308 5.459 -19.395 1.00 18.80 O