HEADER LYASE 27-MAR-15 4Z1Y TITLE THERMOSTABLE ENOLASE FROM CHLOROFLEXUS AURANTIACUS WITH SUBSTRATE 2- TITLE 2 PHOSPHOGLYCERATE CAVEAT 4Z1Y RESIDUE B GLN 155 AND RESIDUE B HIS 156 ARE NOT PROPERLY CAVEAT 2 4Z1Y LINKED: DISTANCE BETWEEN C AND N IS 1.10. RESIDUE B THR 158 CAVEAT 3 4Z1Y AND RESIDUE B ASN 159 ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 4 4Z1Y BETWEEN C AND N IS 1.04. RESIDUE B ARG 262 AND RESIDUE B CAVEAT 5 4Z1Y SER 263 ARE NOT PROPERLY LINKED: DISTANCE BETWEEN C AND N CAVEAT 6 4Z1Y IS 1.12. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-PHOSPHO-D-GLYCERATE HYDRO-LYASE,2-PHOSPHOGLYCERATE COMPND 5 DEHYDRATASE; COMPND 6 EC: 4.2.1.11 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLOROFLEXUS AURANTIACUS (STRAIN ATCC 29366 / SOURCE 3 DSM 635 / J-10-FL); SOURCE 4 ORGANISM_TAXID: 324602; SOURCE 5 STRAIN: ATCC 29366 / DSM 635 / J-10-FL; SOURCE 6 ATCC: 29366 KEYWDS ENOLASE, THERMOSTABILITY, THERMOPHILIC ORIGIN, PHYLOGENY, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.ZADVORNYY,J.W.PETERS REVDAT 2 06-MAR-24 4Z1Y 1 SOURCE REMARK REVDAT 1 01-JUL-15 4Z1Y 0 JRNL AUTH O.A.ZADVORNYY,E.S.BOYD,M.C.POSEWITZ,N.A.ZORIN,J.W.PETERS JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF ENOLASE FROM JRNL TITL 2 CHLOROFLEXUS AURANTIACUS: EVIDENCE FOR A THERMOPHILIC JRNL TITL 3 ORIGIN. JRNL REF FRONT BIOENG BIOTECHNOL V. 3 74 2015 JRNL REFN ISSN 2296-4185 JRNL PMID 26082925 JRNL DOI 10.3389/FBIOE.2015.00074 REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.1 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1794 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.60 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2924 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2379 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2781 REMARK 3 BIN R VALUE (WORKING SET) : 0.2351 REMARK 3 BIN FREE R VALUE : 0.2928 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.89 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 143 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6382 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 61.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.01530 REMARK 3 B22 (A**2) : 4.01530 REMARK 3 B33 (A**2) : -8.03070 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.363 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.388 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.259 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.429 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.270 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.902 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6501 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8820 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2258 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 167 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 964 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6501 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 873 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7785 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.20 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.92 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.70 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-15. REMARK 100 THE DEPOSITION ID IS D_1000208421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 37.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE BUFFER (PH REMARK 280 9.0), 0.21 M NACL, 28% (W/V) PEG 1500 AND 20% (V/V) GLYCEROL, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 73.16200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 73.16200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.94150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 73.16200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 73.16200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.94150 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 73.16200 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 73.16200 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 50.94150 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 73.16200 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 73.16200 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 50.94150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 251 REMARK 465 MET B 1 REMARK 465 PHE B 250 REMARK 465 GLU B 251 REMARK 465 ASP B 252 REMARK 465 GLY B 253 REMARK 465 LYS B 254 REMARK 465 TYR B 255 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER A 40 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR B 158 N ASN B 159 1.69 REMARK 500 CG2 THR B 161 OD1 ASN B 216 1.73 REMARK 500 N HIS B 156 CB ALA B 157 1.77 REMARK 500 O ALA A 42 CG GLU A 51 1.78 REMARK 500 NH1 ARG A 17 OD2 ASP A 205 1.80 REMARK 500 CB LYS A 254 O LEU A 264 1.88 REMARK 500 CZ ARG A 17 OD2 ASP A 205 1.96 REMARK 500 NH1 ARG A 395 CG ARG B 395 2.02 REMARK 500 O ASP B 205 NH1 ARG B 395 2.10 REMARK 500 ND1 HIS A 366 O LYS A 389 2.12 REMARK 500 NH1 ARG B 262 CD2 TYR B 272 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B 155 C HIS B 156 N -0.236 REMARK 500 THR B 158 C ASN B 159 N -0.294 REMARK 500 ARG B 262 C SER B 263 N -0.211 REMARK 500 LEU B 264 C SER B 265 N 0.226 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 39 O - C - N ANGL. DEV. = 10.5 DEGREES REMARK 500 GLY A 204 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 ASP A 205 N - CA - C ANGL. DEV. = 17.2 DEGREES REMARK 500 LEU A 264 CB - CA - C ANGL. DEV. = 18.2 DEGREES REMARK 500 GLN B 155 CB - CA - C ANGL. DEV. = -22.7 DEGREES REMARK 500 GLN B 155 N - CA - C ANGL. DEV. = 25.2 DEGREES REMARK 500 GLN B 155 CA - C - N ANGL. DEV. = 17.1 DEGREES REMARK 500 GLN B 155 O - C - N ANGL. DEV. = -21.0 DEGREES REMARK 500 HIS B 156 N - CA - CB ANGL. DEV. = -22.5 DEGREES REMARK 500 THR B 158 CA - C - N ANGL. DEV. = 23.8 DEGREES REMARK 500 THR B 158 O - C - N ANGL. DEV. = -27.2 DEGREES REMARK 500 ASN B 159 N - CA - CB ANGL. DEV. = -27.0 DEGREES REMARK 500 ASN B 159 N - CA - C ANGL. DEV. = 18.1 DEGREES REMARK 500 ARG B 262 CB - CA - C ANGL. DEV. = -22.3 DEGREES REMARK 500 ARG B 262 CA - C - N ANGL. DEV. = 21.9 DEGREES REMARK 500 ARG B 262 O - C - N ANGL. DEV. = -21.5 DEGREES REMARK 500 SER B 263 N - CA - CB ANGL. DEV. = -15.1 DEGREES REMARK 500 LEU B 264 CB - CA - C ANGL. DEV. = 20.6 DEGREES REMARK 500 LEU B 264 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 SER B 265 N - CA - CB ANGL. DEV. = 30.5 DEGREES REMARK 500 SER B 265 N - CA - C ANGL. DEV. = -17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 42 -150.68 57.03 REMARK 500 SER A 43 -12.07 -142.13 REMARK 500 SER A 43 -104.04 -149.16 REMARK 500 THR A 44 -81.57 61.46 REMARK 500 ALA A 46 -154.72 50.31 REMARK 500 ALA A 46 153.98 99.68 REMARK 500 GLU A 74 -77.08 -112.23 REMARK 500 HIS A 141 -9.26 -148.87 REMARK 500 HIS A 156 23.73 -65.76 REMARK 500 ASN A 159 -23.94 178.39 REMARK 500 THR A 161 157.96 90.44 REMARK 500 ASP A 162 -57.49 -122.52 REMARK 500 PHE A 163 -179.81 -46.09 REMARK 500 ASP A 196 38.22 -85.40 REMARK 500 ARG A 197 -10.50 -151.07 REMARK 500 THR A 201 78.88 -101.86 REMARK 500 VAL A 203 100.47 -171.30 REMARK 500 ALA A 210 76.10 -118.49 REMARK 500 THR A 246 -6.56 -54.94 REMARK 500 TYR A 255 154.48 101.68 REMARK 500 SER A 263 -86.26 -140.97 REMARK 500 LEU A 264 -168.08 74.79 REMARK 500 ARG A 307 -2.73 -141.13 REMARK 500 ASP A 313 -88.24 -114.20 REMARK 500 SER A 358 6.36 97.33 REMARK 500 ALA A 394 -85.01 -133.17 REMARK 500 PRO B 39 -152.43 -72.93 REMARK 500 SER B 40 140.53 165.48 REMARK 500 THR B 44 -172.23 65.06 REMARK 500 ALA B 46 -147.04 56.67 REMARK 500 GLU B 74 -77.50 -121.77 REMARK 500 ALA B 140 98.85 -69.79 REMARK 500 HIS B 141 -5.67 -150.21 REMARK 500 ILE B 150 -42.60 -137.02 REMARK 500 ASN B 152 -150.04 -102.03 REMARK 500 GLN B 155 75.81 -63.84 REMARK 500 HIS B 156 -57.75 -121.90 REMARK 500 ALA B 157 155.66 163.93 REMARK 500 PHE B 163 162.50 -45.47 REMARK 500 GLN B 164 -76.70 -110.09 REMARK 500 GLN B 237 -52.61 -125.89 REMARK 500 ARG B 262 50.19 -95.80 REMARK 500 LEU B 264 153.42 123.58 REMARK 500 ALA B 290 159.00 -48.63 REMARK 500 ASP B 313 -88.13 -100.62 REMARK 500 ALA B 394 -5.91 -149.43 REMARK 500 LYS B 425 32.13 -91.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 204 11.43 REMARK 500 GLN B 155 15.09 REMARK 500 THR B 158 15.86 REMARK 500 ARG B 262 -13.21 REMARK 500 LEU B 264 14.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 243 OD2 REMARK 620 2 GLU A 286 OE1 80.7 REMARK 620 3 ASP A 313 OD2 167.3 86.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 243 OD2 REMARK 620 2 GLU B 286 OE1 75.6 REMARK 620 3 ASP B 313 OD2 158.4 85.0 REMARK 620 4 2PG B 502 O2 98.9 106.6 77.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2PG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2PG B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4YWS RELATED DB: PDB REMARK 900 4YWS CONTAINS THE SAME PROTEIN WITHOUT SUBSTRATE/PRODUCT REMARK 900 RELATED ID: 4Z17 RELATED DB: PDB REMARK 900 4Z17 CONTAINS THE SAME PROTEIN WITH PRODUCT PEP DBREF 4Z1Y A 1 426 UNP A9WCM4 ENO_CHLAA 1 426 DBREF 4Z1Y B 1 426 UNP A9WCM4 ENO_CHLAA 1 426 SEQRES 1 A 426 MET SER THR LEU ILE GLU ALA ILE VAL ALA ARG GLU VAL SEQRES 2 A 426 LEU ASP SER ARG GLY ASN PRO THR ILE GLU VAL ASP VAL SEQRES 3 A 426 ARG LEU GLU SER GLY ASP VAL GLY ARG ALA ILE VAL PRO SEQRES 4 A 426 SER GLY ALA SER THR GLY ALA HIS GLU ALA LEU GLU LEU SEQRES 5 A 426 ARG ASP GLY ASP LYS SER ARG TYR ASN GLY LYS GLY VAL SEQRES 6 A 426 LEU LYS ALA VAL GLN ALA VAL ASN GLU ASP ILE ALA GLU SEQRES 7 A 426 ALA LEU ILE GLY PHE ASP ALA ALA ASP GLN ILE ALA LEU SEQRES 8 A 426 ASP GLN GLU LEU ILE ALA LEU ASP GLY THR PRO ASN LYS SEQRES 9 A 426 SER LYS LEU GLY ALA ASN ALA ILE LEU GLY VAL SER LEU SEQRES 10 A 426 ALA ALA ALA LYS ALA ALA ALA ALA ALA PHE GLY LEU PRO SEQRES 11 A 426 LEU TYR ARG TYR LEU GLY GLY VAL TYR ALA HIS VAL LEU SEQRES 12 A 426 PRO VAL PRO MET MET ASN ILE MET ASN GLY GLY GLN HIS SEQRES 13 A 426 ALA THR ASN SER THR ASP PHE GLN GLU PHE MET ILE MET SEQRES 14 A 426 PRO VAL GLY ALA GLU SER PHE ARG GLU GLY LEU ARG TRP SEQRES 15 A 426 GLY ALA GLU ILE TYR HIS MET LEU LYS LYS VAL ILE HIS SEQRES 16 A 426 ASP ARG GLY PHE SER THR THR VAL GLY ASP GLU GLY GLY SEQRES 17 A 426 PHE ALA PRO SER LEU PRO THR ASN ASP ALA PRO LEU GLN SEQRES 18 A 426 LEU ILE MET GLU ALA ILE GLU LYS ALA GLY TYR ARG PRO SEQRES 19 A 426 GLY GLU GLN ILE VAL ILE ALA LEU ASP PRO ALA THR THR SEQRES 20 A 426 GLU ILE PHE GLU ASP GLY LYS TYR HIS LEU LYS ARG GLU SEQRES 21 A 426 GLY ARG SER LEU SER SER ALA GLU MET VAL ASP TYR TRP SEQRES 22 A 426 VAL ASP LEU VAL ASN ARG TYR PRO ILE ILE SER LEU GLU SEQRES 23 A 426 ASP GLY LEU ALA GLU ASP ASP TRP GLU GLY TRP ALA LEU SEQRES 24 A 426 LEU ARG ALA LYS LEU GLY ASP ARG VAL GLN LEU VAL GLY SEQRES 25 A 426 ASP ASP PHE LEU VAL THR ASN VAL GLN ARG LEU GLN ARG SEQRES 26 A 426 ALA ILE GLU ALA LYS ALA ALA ASN SER ILE LEU ILE LYS SEQRES 27 A 426 LEU ASN GLN ILE GLY SER LEU THR GLU THR LEU SER ALA SEQRES 28 A 426 ILE GLN LEU ALA GLN ARG SER GLY TRP THR ALA VAL VAL SEQRES 29 A 426 SER HIS ARG SER GLY GLU SER GLU ASP VAL THR ILE ALA SEQRES 30 A 426 ASP LEU VAL VAL ALA THR ASN ALA GLY GLN ILE LYS THR SEQRES 31 A 426 GLY ALA PRO ALA ARG THR ASP ARG ILE ALA LYS TYR ASN SEQRES 32 A 426 GLN LEU LEU ARG ILE GLU GLU GLU LEU GLY SER ALA ALA SEQRES 33 A 426 ARG TYR ALA GLY ARG SER ALA PHE LYS VAL SEQRES 1 B 426 MET SER THR LEU ILE GLU ALA ILE VAL ALA ARG GLU VAL SEQRES 2 B 426 LEU ASP SER ARG GLY ASN PRO THR ILE GLU VAL ASP VAL SEQRES 3 B 426 ARG LEU GLU SER GLY ASP VAL GLY ARG ALA ILE VAL PRO SEQRES 4 B 426 SER GLY ALA SER THR GLY ALA HIS GLU ALA LEU GLU LEU SEQRES 5 B 426 ARG ASP GLY ASP LYS SER ARG TYR ASN GLY LYS GLY VAL SEQRES 6 B 426 LEU LYS ALA VAL GLN ALA VAL ASN GLU ASP ILE ALA GLU SEQRES 7 B 426 ALA LEU ILE GLY PHE ASP ALA ALA ASP GLN ILE ALA LEU SEQRES 8 B 426 ASP GLN GLU LEU ILE ALA LEU ASP GLY THR PRO ASN LYS SEQRES 9 B 426 SER LYS LEU GLY ALA ASN ALA ILE LEU GLY VAL SER LEU SEQRES 10 B 426 ALA ALA ALA LYS ALA ALA ALA ALA ALA PHE GLY LEU PRO SEQRES 11 B 426 LEU TYR ARG TYR LEU GLY GLY VAL TYR ALA HIS VAL LEU SEQRES 12 B 426 PRO VAL PRO MET MET ASN ILE MET ASN GLY GLY GLN HIS SEQRES 13 B 426 ALA THR ASN SER THR ASP PHE GLN GLU PHE MET ILE MET SEQRES 14 B 426 PRO VAL GLY ALA GLU SER PHE ARG GLU GLY LEU ARG TRP SEQRES 15 B 426 GLY ALA GLU ILE TYR HIS MET LEU LYS LYS VAL ILE HIS SEQRES 16 B 426 ASP ARG GLY PHE SER THR THR VAL GLY ASP GLU GLY GLY SEQRES 17 B 426 PHE ALA PRO SER LEU PRO THR ASN ASP ALA PRO LEU GLN SEQRES 18 B 426 LEU ILE MET GLU ALA ILE GLU LYS ALA GLY TYR ARG PRO SEQRES 19 B 426 GLY GLU GLN ILE VAL ILE ALA LEU ASP PRO ALA THR THR SEQRES 20 B 426 GLU ILE PHE GLU ASP GLY LYS TYR HIS LEU LYS ARG GLU SEQRES 21 B 426 GLY ARG SER LEU SER SER ALA GLU MET VAL ASP TYR TRP SEQRES 22 B 426 VAL ASP LEU VAL ASN ARG TYR PRO ILE ILE SER LEU GLU SEQRES 23 B 426 ASP GLY LEU ALA GLU ASP ASP TRP GLU GLY TRP ALA LEU SEQRES 24 B 426 LEU ARG ALA LYS LEU GLY ASP ARG VAL GLN LEU VAL GLY SEQRES 25 B 426 ASP ASP PHE LEU VAL THR ASN VAL GLN ARG LEU GLN ARG SEQRES 26 B 426 ALA ILE GLU ALA LYS ALA ALA ASN SER ILE LEU ILE LYS SEQRES 27 B 426 LEU ASN GLN ILE GLY SER LEU THR GLU THR LEU SER ALA SEQRES 28 B 426 ILE GLN LEU ALA GLN ARG SER GLY TRP THR ALA VAL VAL SEQRES 29 B 426 SER HIS ARG SER GLY GLU SER GLU ASP VAL THR ILE ALA SEQRES 30 B 426 ASP LEU VAL VAL ALA THR ASN ALA GLY GLN ILE LYS THR SEQRES 31 B 426 GLY ALA PRO ALA ARG THR ASP ARG ILE ALA LYS TYR ASN SEQRES 32 B 426 GLN LEU LEU ARG ILE GLU GLU GLU LEU GLY SER ALA ALA SEQRES 33 B 426 ARG TYR ALA GLY ARG SER ALA PHE LYS VAL HET MG A 501 1 HET 2PG A 502 11 HET MG B 501 1 HET 2PG B 502 11 HETNAM MG MAGNESIUM ION HETNAM 2PG 2-PHOSPHOGLYCERIC ACID FORMUL 3 MG 2(MG 2+) FORMUL 4 2PG 2(C3 H7 O7 P) FORMUL 7 HOH *23(H2 O) HELIX 1 AA1 ARG A 59 LYS A 63 5 5 HELIX 2 AA2 VAL A 65 GLU A 74 1 10 HELIX 3 AA3 GLU A 74 ILE A 81 1 8 HELIX 4 AA4 ASP A 87 GLY A 100 1 14 HELIX 5 AA5 GLY A 108 GLY A 128 1 21 HELIX 6 AA6 PRO A 130 GLY A 137 1 8 HELIX 7 AA7 VAL A 138 ALA A 140 5 3 HELIX 8 AA8 GLY A 154 ALA A 157 5 4 HELIX 9 AA9 SER A 175 ASP A 196 1 22 HELIX 10 AB1 ASP A 217 ALA A 230 1 14 HELIX 11 AB2 ALA A 245 PHE A 250 5 6 HELIX 12 AB3 SER A 265 TYR A 280 1 16 HELIX 13 AB4 ASP A 293 GLY A 305 1 13 HELIX 14 AB5 ASN A 319 LYS A 330 1 12 HELIX 15 AB6 LYS A 338 GLY A 343 1 6 HELIX 16 AB7 SER A 344 ARG A 357 1 14 HELIX 17 AB8 VAL A 374 THR A 383 1 10 HELIX 18 AB9 ARG A 395 GLY A 413 1 19 HELIX 19 AC1 SER A 414 ALA A 416 5 3 HELIX 20 AC2 GLY A 420 PHE A 424 5 5 HELIX 21 AC3 ARG B 59 LYS B 63 5 5 HELIX 22 AC4 VAL B 65 GLU B 74 1 10 HELIX 23 AC5 GLU B 74 ILE B 81 1 8 HELIX 24 AC6 ASP B 87 GLY B 100 1 14 HELIX 25 AC7 GLY B 108 PHE B 127 1 20 HELIX 26 AC8 PRO B 130 GLY B 137 1 8 HELIX 27 AC9 SER B 175 HIS B 195 1 21 HELIX 28 AD1 ASP B 217 ALA B 230 1 14 HELIX 29 AD2 ALA B 245 ILE B 249 5 5 HELIX 30 AD3 SER B 265 TYR B 280 1 16 HELIX 31 AD4 ASP B 293 GLY B 305 1 13 HELIX 32 AD5 ASN B 319 ALA B 329 1 11 HELIX 33 AD6 LYS B 338 GLY B 343 1 6 HELIX 34 AD7 SER B 344 SER B 358 1 15 HELIX 35 AD8 VAL B 374 THR B 383 1 10 HELIX 36 AD9 ARG B 395 GLY B 413 1 19 HELIX 37 AE1 SER B 414 ALA B 416 5 3 HELIX 38 AE2 GLY B 420 PHE B 424 5 5 SHEET 1 AA1 3 ILE A 5 LEU A 14 0 SHEET 2 AA1 3 PRO A 20 LEU A 28 -1 O ASP A 25 N VAL A 9 SHEET 3 AA1 3 VAL A 33 ILE A 37 -1 O ALA A 36 N VAL A 24 SHEET 1 AA2 2 VAL A 142 LEU A 143 0 SHEET 2 AA2 2 ARG A 417 TYR A 418 1 O ARG A 417 N LEU A 143 SHEET 1 AA3 9 VAL A 145 PRO A 146 0 SHEET 2 AA3 9 GLN A 387 LYS A 389 1 O ILE A 388 N VAL A 145 SHEET 3 AA3 9 THR A 361 SER A 365 1 N VAL A 364 O LYS A 389 SHEET 4 AA3 9 SER A 334 ILE A 337 1 N ILE A 337 O VAL A 363 SHEET 5 AA3 9 GLN A 309 GLY A 312 1 N GLY A 312 O LEU A 336 SHEET 6 AA3 9 ILE A 282 GLU A 286 1 N ILE A 283 O GLN A 309 SHEET 7 AA3 9 VAL A 239 ASP A 243 1 N LEU A 242 O GLU A 286 SHEET 8 AA3 9 GLU A 165 MET A 169 -1 N MET A 167 O ALA A 241 SHEET 9 AA3 9 MET A 148 ASN A 152 -1 N MET A 148 O ILE A 168 SHEET 1 AA4 3 ILE B 5 LEU B 14 0 SHEET 2 AA4 3 PRO B 20 LEU B 28 -1 O ASP B 25 N VAL B 9 SHEET 3 AA4 3 VAL B 33 ILE B 37 -1 O ALA B 36 N VAL B 24 SHEET 1 AA5 2 VAL B 142 LEU B 143 0 SHEET 2 AA5 2 ARG B 417 TYR B 418 1 O ARG B 417 N LEU B 143 SHEET 1 AA6 9 VAL B 145 PRO B 146 0 SHEET 2 AA6 9 GLN B 387 LYS B 389 1 O ILE B 388 N VAL B 145 SHEET 3 AA6 9 THR B 361 SER B 365 1 N VAL B 364 O LYS B 389 SHEET 4 AA6 9 SER B 334 ILE B 337 1 N ILE B 335 O VAL B 363 SHEET 5 AA6 9 GLN B 309 GLY B 312 1 N GLY B 312 O SER B 334 SHEET 6 AA6 9 ILE B 282 GLU B 286 1 N LEU B 285 O GLN B 309 SHEET 7 AA6 9 VAL B 239 ASP B 243 1 N ILE B 240 O ILE B 283 SHEET 8 AA6 9 GLU B 165 MET B 169 -1 N MET B 167 O ALA B 241 SHEET 9 AA6 9 MET B 148 MET B 151 -1 N MET B 148 O ILE B 168 LINK OD2 ASP A 243 MG MG A 501 1555 1555 2.30 LINK OE1 GLU A 286 MG MG A 501 1555 1555 2.29 LINK OD2 ASP A 313 MG MG A 501 1555 1555 2.06 LINK OD2 ASP B 243 MG MG B 501 1555 1555 2.45 LINK OE1 GLU B 286 MG MG B 501 1555 1555 2.30 LINK OD2 ASP B 313 MG MG B 501 1555 1555 2.19 LINK MG MG B 501 O2 B2PG B 502 1555 1555 2.52 CISPEP 1 SER A 40 GLY A 41 0 -0.02 CISPEP 2 SER A 40 GLY A 41 0 0.02 CISPEP 3 ASP A 252 GLY A 253 0 -0.11 CISPEP 4 ALA B 42 SER B 43 0 1.35 CISPEP 5 THR B 44 GLY B 45 0 5.70 CISPEP 6 HIS B 156 ALA B 157 0 -0.07 CISPEP 7 LYS B 258 ARG B 259 0 -0.77 CISPEP 8 LEU B 264 SER B 265 0 27.17 SITE 1 AC1 4 ASP A 243 GLU A 286 ASP A 313 2PG A 502 SITE 1 AC2 7 GLU A 206 LYS A 338 ARG A 367 SER A 368 SITE 2 AC2 7 LYS A 389 MG A 501 HOH A 611 SITE 1 AC3 4 ASP B 243 GLU B 286 ASP B 313 2PG B 502 SITE 1 AC4 12 ALA B 42 GLU B 206 ASP B 313 LEU B 336 SITE 2 AC4 12 LYS B 338 SER B 365 HIS B 366 ARG B 367 SITE 3 AC4 12 SER B 368 LYS B 389 MG B 501 HOH B 602 CRYST1 146.324 146.324 101.883 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006834 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006834 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009815 0.00000