HEADER RNA BINDING PROTEIN/RNA 30-MAR-15 4Z31 TITLE CRYSTAL STRUCTURE OF THE RC3H2 ROQ DOMAIN IN COMPLEX WITH STEM-LOOP TITLE 2 AND DOUBLE-STRANDED FORMS OF RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ROQUIN-2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 87-404; COMPND 5 SYNONYM: MEMBRANE-ASSOCIATED NUCLEIC ACID-BINDING PROTEIN,RING FINGER COMPND 6 AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 2,RING FINGER COMPND 7 PROTEIN 164; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: RNA (5'-R(*A)- COMPND 11 D(P*UP*GP*UP*UP*CP*UP*GP*UP*GP*AP*AP*CP*AP*C)-3'); COMPND 12 CHAIN: C, D, E, F; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RC3H2, MNAB, RNF164; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS ROQUIN2, RNA, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, KEYWDS 2 SGC, RNA BINDING PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,Q.ZHANG,W.TEMPEL,C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,Y.TONG, AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 27-SEP-23 4Z31 1 REMARK REVDAT 2 29-JUN-16 4Z31 1 JRNL REVDAT 1 14-OCT-15 4Z31 0 JRNL AUTH Q.ZHANG,L.FAN,F.HOU,A.DONG,Y.X.WANG,Y.TONG JRNL TITL NEW INSIGHTS INTO THE RNA-BINDING AND E3 UBIQUITIN LIGASE JRNL TITL 2 ACTIVITIES OF ROQUINS. JRNL REF SCI REP V. 5 15660 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26489670 JRNL DOI 10.1038/SREP15660 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 38676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.100 REMARK 3 FREE R VALUE TEST SET COUNT : 822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2733 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4534 REMARK 3 NUCLEIC ACID ATOMS : 1221 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.84000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.380 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.214 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.927 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.920 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5980 ; 0.007 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 5054 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8380 ; 1.094 ; 1.797 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11630 ; 1.218 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 4.693 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;32.010 ;23.596 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 795 ;13.394 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;14.196 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 967 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5902 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1338 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2350 ; 2.017 ; 6.164 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2349 ; 2.017 ; 6.162 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2931 ; 3.275 ; 9.237 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 92 395 B 92 395 33566 0.090 0.050 REMARK 3 2 C 2 13 D 2 13 1700 0.180 0.050 REMARK 3 3 E 1 15 F 1 15 2356 0.050 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4Z31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208282. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39757 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4QIK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS DILUTED TO 6.7 MG/ML REMARK 280 THEN MIXED WITH IER3 RNA AT A RATIO 1:2 BEFORE CRYSTALLIZED. 17% REMARK 280 PEG10000, 0.1 M BIS-TRIS PH6.5, 5% ETHYLENE GLYCOL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 87.36700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 86 REMARK 465 SER A 87 REMARK 465 ASN A 88 REMARK 465 LEU A 89 REMARK 465 GLY A 90 REMARK 465 GLU A 91 REMARK 465 LEU A 112 REMARK 465 SER A 113 REMARK 465 GLY A 114 REMARK 465 GLY A 115 REMARK 465 LYS A 116 REMARK 465 GLY A 117 REMARK 465 VAL A 118 REMARK 465 ALA A 119 REMARK 465 SER A 120 REMARK 465 LEU A 121 REMARK 465 ASN A 122 REMARK 465 GLN A 123 REMARK 465 SER A 124 REMARK 465 LYS A 398 REMARK 465 GLY A 399 REMARK 465 HIS A 400 REMARK 465 GLU A 401 REMARK 465 THR A 402 REMARK 465 PRO A 403 REMARK 465 GLN A 404 REMARK 465 GLY B 86 REMARK 465 SER B 87 REMARK 465 PRO B 111 REMARK 465 LEU B 112 REMARK 465 SER B 113 REMARK 465 GLY B 114 REMARK 465 GLY B 115 REMARK 465 LYS B 116 REMARK 465 GLY B 117 REMARK 465 VAL B 118 REMARK 465 ALA B 119 REMARK 465 SER B 120 REMARK 465 LEU B 121 REMARK 465 ASN B 122 REMARK 465 GLN B 123 REMARK 465 SER B 124 REMARK 465 ARG B 397 REMARK 465 LYS B 398 REMARK 465 GLY B 399 REMARK 465 HIS B 400 REMARK 465 GLU B 401 REMARK 465 THR B 402 REMARK 465 PRO B 403 REMARK 465 GLN B 404 REMARK 465 A C 1 REMARK 465 C D 15 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 LYS A 110 CG CD CE NZ REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 GLN A 174 CD OE1 NE2 REMARK 470 ARG A 230 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 236 CE NZ REMARK 470 LYS A 253 CE NZ REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 GLU A 259 CG CD OE1 OE2 REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 LYS A 311 CE NZ REMARK 470 LYS A 329 CD CE NZ REMARK 470 GLN A 339 CD OE1 NE2 REMARK 470 ARG A 351 NH1 NH2 REMARK 470 ASN A 363 CG OD1 ND2 REMARK 470 ASP A 365 CG OD1 OD2 REMARK 470 LYS B 93 CG CD CE NZ REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 132 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 134 CD1 CD2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 LEU B 208 CG CD1 CD2 REMARK 470 LYS B 217 CG CD CE NZ REMARK 470 GLN B 225 CG CD OE1 NE2 REMARK 470 LYS B 236 CG CD CE NZ REMARK 470 LYS B 253 CD CE NZ REMARK 470 LYS B 256 CG CD CE NZ REMARK 470 ASP B 258 CG OD1 OD2 REMARK 470 GLU B 259 CG CD OE1 OE2 REMARK 470 LEU B 263 CG CD1 CD2 REMARK 470 GLU B 268 OE1 OE2 REMARK 470 LYS B 329 CE NZ REMARK 470 GLN B 339 CD OE1 NE2 REMARK 470 ASN B 363 CG OD1 ND2 REMARK 470 ASP B 365 CG OD1 OD2 REMARK 470 VAL B 367 CG1 CG2 REMARK 470 SER B 368 OG REMARK 470 GLU B 372 CG CD OE1 OE2 REMARK 470 GLN B 393 CD OE1 NE2 REMARK 470 SER B 396 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 157 OP1 A D 11 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 A E 1 P A E 1 OP3 -0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 148 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU B 158 CB - CG - CD1 ANGL. DEV. = 11.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 343 64.46 68.29 REMARK 500 ASP A 365 49.02 -94.02 REMARK 500 ASP B 343 65.82 68.49 REMARK 500 ASP B 365 49.07 -94.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 501 DBREF 4Z31 A 87 404 UNP Q9HBD1 RC3H2_HUMAN 87 404 DBREF 4Z31 B 87 404 UNP Q9HBD1 RC3H2_HUMAN 87 404 DBREF 4Z31 C 1 15 PDB 4Z31 4Z31 1 15 DBREF 4Z31 D 1 15 PDB 4Z31 4Z31 1 15 DBREF 4Z31 E 1 15 PDB 4Z31 4Z31 1 15 DBREF 4Z31 F 1 15 PDB 4Z31 4Z31 1 15 SEQADV 4Z31 GLY A 86 UNP Q9HBD1 EXPRESSION TAG SEQADV 4Z31 GLY B 86 UNP Q9HBD1 EXPRESSION TAG SEQRES 1 A 319 GLY SER ASN LEU GLY GLU ASN LYS HIS TYR GLU VAL ALA SEQRES 2 A 319 LYS LYS CYS VAL GLU ASP LEU ALA LEU TYR LEU LYS PRO SEQRES 3 A 319 LEU SER GLY GLY LYS GLY VAL ALA SER LEU ASN GLN SER SEQRES 4 A 319 ALA LEU SER ARG PRO MET GLN ARG LYS LEU VAL THR LEU SEQRES 5 A 319 VAL ASN CYS GLN LEU VAL GLU GLU GLU GLY ARG VAL ARG SEQRES 6 A 319 ALA MET ARG ALA ALA ARG SER LEU GLY GLU ARG THR VAL SEQRES 7 A 319 THR GLU LEU ILE LEU GLN HIS GLN ASN PRO GLN GLN LEU SEQRES 8 A 319 SER ALA ASN LEU TRP ALA ALA VAL ARG ALA ARG GLY CYS SEQRES 9 A 319 GLN PHE LEU GLY PRO ALA MET GLN GLU GLU ALA LEU LYS SEQRES 10 A 319 LEU VAL LEU LEU ALA LEU GLU ASP GLY SER ALA LEU SER SEQRES 11 A 319 ARG LYS VAL LEU VAL LEU PHE VAL VAL GLN ARG LEU GLU SEQRES 12 A 319 PRO ARG PHE PRO GLN ALA SER LYS THR SER ILE GLY HIS SEQRES 13 A 319 VAL VAL GLN LEU LEU TYR ARG ALA SER CYS PHE LYS VAL SEQRES 14 A 319 THR LYS ARG ASP GLU ASP SER SER LEU MET GLN LEU LYS SEQRES 15 A 319 GLU GLU PHE ARG SER TYR GLU ALA LEU ARG ARG GLU HIS SEQRES 16 A 319 ASP ALA GLN ILE VAL HIS ILE ALA MET GLU ALA GLY LEU SEQRES 17 A 319 ARG ILE SER PRO GLU GLN TRP SER SER LEU LEU TYR GLY SEQRES 18 A 319 ASP LEU ALA HIS LYS SER HIS MET GLN SER ILE ILE ASP SEQRES 19 A 319 LYS LEU GLN SER PRO GLU SER PHE ALA LYS SER VAL GLN SEQRES 20 A 319 GLU LEU THR ILE VAL LEU GLN ARG THR GLY ASP PRO ALA SEQRES 21 A 319 ASN LEU ASN ARG LEU ARG PRO HIS LEU GLU LEU LEU ALA SEQRES 22 A 319 ASN ILE ASP PRO ASN PRO ASP ALA VAL SER PRO THR TRP SEQRES 23 A 319 GLU GLN LEU GLU ASN ALA MET VAL ALA VAL LYS THR VAL SEQRES 24 A 319 VAL HIS GLY LEU VAL ASP PHE ILE GLN ASN TYR SER ARG SEQRES 25 A 319 LYS GLY HIS GLU THR PRO GLN SEQRES 1 B 319 GLY SER ASN LEU GLY GLU ASN LYS HIS TYR GLU VAL ALA SEQRES 2 B 319 LYS LYS CYS VAL GLU ASP LEU ALA LEU TYR LEU LYS PRO SEQRES 3 B 319 LEU SER GLY GLY LYS GLY VAL ALA SER LEU ASN GLN SER SEQRES 4 B 319 ALA LEU SER ARG PRO MET GLN ARG LYS LEU VAL THR LEU SEQRES 5 B 319 VAL ASN CYS GLN LEU VAL GLU GLU GLU GLY ARG VAL ARG SEQRES 6 B 319 ALA MET ARG ALA ALA ARG SER LEU GLY GLU ARG THR VAL SEQRES 7 B 319 THR GLU LEU ILE LEU GLN HIS GLN ASN PRO GLN GLN LEU SEQRES 8 B 319 SER ALA ASN LEU TRP ALA ALA VAL ARG ALA ARG GLY CYS SEQRES 9 B 319 GLN PHE LEU GLY PRO ALA MET GLN GLU GLU ALA LEU LYS SEQRES 10 B 319 LEU VAL LEU LEU ALA LEU GLU ASP GLY SER ALA LEU SER SEQRES 11 B 319 ARG LYS VAL LEU VAL LEU PHE VAL VAL GLN ARG LEU GLU SEQRES 12 B 319 PRO ARG PHE PRO GLN ALA SER LYS THR SER ILE GLY HIS SEQRES 13 B 319 VAL VAL GLN LEU LEU TYR ARG ALA SER CYS PHE LYS VAL SEQRES 14 B 319 THR LYS ARG ASP GLU ASP SER SER LEU MET GLN LEU LYS SEQRES 15 B 319 GLU GLU PHE ARG SER TYR GLU ALA LEU ARG ARG GLU HIS SEQRES 16 B 319 ASP ALA GLN ILE VAL HIS ILE ALA MET GLU ALA GLY LEU SEQRES 17 B 319 ARG ILE SER PRO GLU GLN TRP SER SER LEU LEU TYR GLY SEQRES 18 B 319 ASP LEU ALA HIS LYS SER HIS MET GLN SER ILE ILE ASP SEQRES 19 B 319 LYS LEU GLN SER PRO GLU SER PHE ALA LYS SER VAL GLN SEQRES 20 B 319 GLU LEU THR ILE VAL LEU GLN ARG THR GLY ASP PRO ALA SEQRES 21 B 319 ASN LEU ASN ARG LEU ARG PRO HIS LEU GLU LEU LEU ALA SEQRES 22 B 319 ASN ILE ASP PRO ASN PRO ASP ALA VAL SER PRO THR TRP SEQRES 23 B 319 GLU GLN LEU GLU ASN ALA MET VAL ALA VAL LYS THR VAL SEQRES 24 B 319 VAL HIS GLY LEU VAL ASP PHE ILE GLN ASN TYR SER ARG SEQRES 25 B 319 LYS GLY HIS GLU THR PRO GLN SEQRES 1 C 15 A U G U U C U G U G A A C SEQRES 2 C 15 A C SEQRES 1 D 15 A U G U U C U G U G A A C SEQRES 2 D 15 A C SEQRES 1 E 15 A U G U U C U G U G A A C SEQRES 2 E 15 A C SEQRES 1 F 15 A U G U U C U G U G A A C SEQRES 2 F 15 A C HET UNX A1000 1 HET UNX A1001 1 HET CL B 501 1 HETNAM UNX UNKNOWN ATOM OR ION HETNAM CL CHLORIDE ION FORMUL 7 UNX 2(X) FORMUL 9 CL CL 1- FORMUL 10 HOH *40(H2 O) HELIX 1 AA1 ASN A 92 LEU A 107 1 16 HELIX 2 AA2 TYR A 108 LYS A 110 5 3 HELIX 3 AA3 SER A 127 ASN A 139 1 13 HELIX 4 AA4 GLU A 144 HIS A 170 1 27 HELIX 5 AA5 GLN A 175 ARG A 187 1 13 HELIX 6 AA6 GLY A 193 GLU A 209 1 17 HELIX 7 AA7 ARG A 216 GLU A 228 1 13 HELIX 8 AA8 SER A 235 ALA A 249 1 15 HELIX 9 AA9 GLU A 268 ARG A 271 5 4 HELIX 10 AB1 SER A 272 ALA A 291 1 20 HELIX 11 AB2 SER A 296 GLY A 306 1 11 HELIX 12 AB3 HIS A 310 GLN A 322 1 13 HELIX 13 AB4 GLU A 325 GLY A 342 1 18 HELIX 14 AB5 ASN A 346 ARG A 349 5 4 HELIX 15 AB6 LEU A 350 ASN A 359 1 10 HELIX 16 AB7 THR A 370 TYR A 395 1 26 HELIX 17 AB8 ASN B 92 LEU B 107 1 16 HELIX 18 AB9 SER B 127 ASN B 139 1 13 HELIX 19 AC1 GLU B 144 HIS B 170 1 27 HELIX 20 AC2 GLN B 175 ARG B 187 1 13 HELIX 21 AC3 GLY B 193 GLU B 209 1 17 HELIX 22 AC4 ARG B 216 GLU B 228 1 13 HELIX 23 AC5 SER B 235 ALA B 249 1 15 HELIX 24 AC6 GLU B 268 ARG B 271 5 4 HELIX 25 AC7 SER B 272 ALA B 291 1 20 HELIX 26 AC8 SER B 296 GLY B 306 1 11 HELIX 27 AC9 HIS B 310 GLN B 322 1 13 HELIX 28 AD1 GLU B 325 GLY B 342 1 18 HELIX 29 AD2 ASN B 346 ARG B 349 5 4 HELIX 30 AD3 LEU B 350 ASN B 359 1 10 HELIX 31 AD4 THR B 370 TYR B 395 1 26 SHEET 1 AA1 3 LEU A 214 SER A 215 0 SHEET 2 AA1 3 ASP A 260 LEU A 266 -1 O MET A 264 N LEU A 214 SHEET 3 AA1 3 PHE A 252 ARG A 257 -1 N LYS A 253 O GLN A 265 SHEET 1 AA2 3 LEU B 214 SER B 215 0 SHEET 2 AA2 3 ASP B 260 LEU B 266 -1 O MET B 264 N LEU B 214 SHEET 3 AA2 3 PHE B 252 ARG B 257 -1 N LYS B 253 O GLN B 265 SITE 1 AC1 2 ASN B 92 GLU B 96 CRYST1 60.299 174.734 61.290 90.00 114.12 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016584 0.000000 0.007426 0.00000 SCALE2 0.000000 0.005723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017877 0.00000