HEADER OXIDOREDUCTASE 01-APR-15 4Z43 TITLE CRYSTAL STRUCTURE OF TRYPTOPHAN 7-HALOGENASE (PRNA) MUTANT E450K COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN-DEPENDENT TRYPTOPHAN HALOGENASE PRNA; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.19.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS FLUORESCENS; SOURCE 3 ORGANISM_TAXID: 294; SOURCE 4 GENE: PRNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, 7-HALOGENASE (PRNA) MUTANT E450K EXPDTA X-RAY DIFFRACTION AUTHOR C.W.LEVY REVDAT 4 10-JAN-24 4Z43 1 REMARK REVDAT 3 18-APR-18 4Z43 1 JRNL REVDAT 2 10-MAY-17 4Z43 1 JRNL REVDAT 1 20-JAN-16 4Z43 0 JRNL AUTH S.A.SHEPHERD,C.KARTHIKEYAN,J.LATHAM,A.W.STRUCK,M.L.THOMPSON, JRNL AUTH 2 B.R.K.MENON,M.Q.STYLES,C.LEVY,D.LEYS,J.MICKLEFIELD JRNL TITL EXTENDING THE BIOCATALYTIC SCOPE OF REGIOCOMPLEMENTARY JRNL TITL 2 FLAVIN-DEPENDENT HALOGENASE ENZYMES. JRNL REF CHEM SCI V. 6 3454 2015 JRNL REFN ISSN 2041-6520 JRNL PMID 29511510 JRNL DOI 10.1039/C5SC00913H REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1977 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.460 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.8523 - 5.5095 1.00 2285 158 0.1578 0.1918 REMARK 3 2 5.5095 - 4.3771 1.00 2140 148 0.1436 0.1739 REMARK 3 3 4.3771 - 3.8249 1.00 2091 144 0.1516 0.1670 REMARK 3 4 3.8249 - 3.4757 1.00 2082 143 0.1792 0.2514 REMARK 3 5 3.4757 - 3.2269 1.00 2077 145 0.2106 0.2574 REMARK 3 6 3.2269 - 3.0368 1.00 2054 142 0.2203 0.2812 REMARK 3 7 3.0368 - 2.8848 1.00 2050 141 0.2287 0.2648 REMARK 3 8 2.8848 - 2.7593 1.00 2034 140 0.2213 0.2807 REMARK 3 9 2.7593 - 2.6532 1.00 2027 141 0.2168 0.2614 REMARK 3 10 2.6532 - 2.5617 1.00 2026 139 0.2300 0.2968 REMARK 3 11 2.5617 - 2.4816 1.00 2037 141 0.2262 0.2871 REMARK 3 12 2.4816 - 2.4107 1.00 2034 141 0.2324 0.3451 REMARK 3 13 2.4107 - 2.3473 1.00 2023 139 0.2398 0.3163 REMARK 3 14 2.3473 - 2.2900 1.00 1989 138 0.2503 0.2934 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4242 REMARK 3 ANGLE : 0.909 5766 REMARK 3 CHIRALITY : 0.040 603 REMARK 3 PLANARITY : 0.004 742 REMARK 3 DIHEDRAL : 13.653 1544 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5688 -29.7580 -19.5619 REMARK 3 T TENSOR REMARK 3 T11: 0.5360 T22: 0.2510 REMARK 3 T33: 0.4044 T12: -0.0518 REMARK 3 T13: 0.0315 T23: 0.0472 REMARK 3 L TENSOR REMARK 3 L11: 1.5209 L22: 3.2913 REMARK 3 L33: 1.0949 L12: -1.6566 REMARK 3 L13: 0.2032 L23: 0.1467 REMARK 3 S TENSOR REMARK 3 S11: 0.1225 S12: -0.0471 S13: -0.2319 REMARK 3 S21: -0.4448 S22: 0.1174 S23: 0.5056 REMARK 3 S31: 0.0287 S32: -0.1657 S33: -0.2144 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4304 -14.9492 -23.7109 REMARK 3 T TENSOR REMARK 3 T11: 0.7465 T22: 0.2434 REMARK 3 T33: 0.4137 T12: 0.0236 REMARK 3 T13: 0.1208 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 1.4424 L22: 2.2062 REMARK 3 L33: 1.4211 L12: -0.8892 REMARK 3 L13: -0.1930 L23: 0.0097 REMARK 3 S TENSOR REMARK 3 S11: 0.2424 S12: -0.0268 S13: 0.0862 REMARK 3 S21: -0.7437 S22: 0.0531 S23: 0.0581 REMARK 3 S31: -0.3284 S32: -0.1381 S33: -0.1948 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 396 THROUGH 517 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.2016 -36.4388 -14.4572 REMARK 3 T TENSOR REMARK 3 T11: 0.4983 T22: 0.2581 REMARK 3 T33: 0.3768 T12: -0.0207 REMARK 3 T13: 0.0680 T23: -0.0587 REMARK 3 L TENSOR REMARK 3 L11: 1.6622 L22: 2.9612 REMARK 3 L33: 1.5172 L12: -1.4143 REMARK 3 L13: 0.1039 L23: -0.2658 REMARK 3 S TENSOR REMARK 3 S11: 0.1272 S12: -0.2977 S13: -0.0735 REMARK 3 S21: -0.0908 S22: 0.1738 S23: 0.0553 REMARK 3 S31: 0.1204 S32: 0.0818 S33: -0.2524 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z43 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208598. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9779 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30949 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 30.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.87000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2AQJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M IMIDAZOLE AND MES BUFFER MIX AT REMARK 280 PH 6.5, CONTAINING 0.09 M NITRATE PHOSPHATE SULFATE SALT MIX REMARK 280 (NANO3; NA2HPO4; (NH4)2SO4)) AND 60% W/V GLYCEROL AND REMARK 280 POLYETHYLENE GLYCOL 4K), PH 7.2, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.08500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.37000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 207.12750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.37000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 69.04250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.37000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.37000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 207.12750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.37000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.37000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.04250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 138.08500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 436 REMARK 465 SER A 437 REMARK 465 PHE A 438 REMARK 465 ASP A 439 REMARK 465 ASP A 440 REMARK 465 SER A 441 REMARK 465 THR A 442 REMARK 465 TYR A 443 REMARK 465 TYR A 444 REMARK 465 GLU A 445 REMARK 465 THR A 446 REMARK 465 ASP A 518 REMARK 465 GLY A 519 REMARK 465 ASP A 520 REMARK 465 ALA A 521 REMARK 465 GLY A 522 REMARK 465 LEU A 523 REMARK 465 SER A 524 REMARK 465 ARG A 525 REMARK 465 GLY A 526 REMARK 465 GLN A 527 REMARK 465 ARG A 528 REMARK 465 GLY A 529 REMARK 465 PRO A 530 REMARK 465 LYS A 531 REMARK 465 LEU A 532 REMARK 465 ALA A 533 REMARK 465 ALA A 534 REMARK 465 GLN A 535 REMARK 465 GLU A 536 REMARK 465 SER A 537 REMARK 465 LEU A 538 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 358 OD2 ASP A 448 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE A 447 CB PHE A 447 CG -0.118 REMARK 500 ASP A 448 C ASP A 448 O -0.121 REMARK 500 PHE A 454 N PHE A 454 CA -0.125 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 448 C - N - CA ANGL. DEV. = 21.3 DEGREES REMARK 500 ASP A 448 N - CA - CB ANGL. DEV. = 13.0 DEGREES REMARK 500 ASP A 448 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 PHE A 454 N - CA - CB ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 59 -68.74 -101.21 REMARK 500 LYS A 89 -167.73 -178.98 REMARK 500 SER A 90 98.95 -40.47 REMARK 500 ALA A 159 -147.39 -116.13 REMARK 500 SER A 237 2.01 -68.86 REMARK 500 PRO A 261 39.03 -80.95 REMARK 500 MET A 268 -165.78 -115.99 REMARK 500 ASN A 330 -117.61 46.03 REMARK 500 SER A 339 -124.71 -102.15 REMARK 500 GLU A 346 -6.34 80.70 REMARK 500 LEU A 433 -162.51 -79.17 REMARK 500 ASP A 448 -29.39 130.69 REMARK 500 ASN A 453 76.03 -177.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 603 DBREF 4Z43 A 1 538 UNP P95480 PRNA_PSEFL 1 538 SEQADV 4Z43 LYS A 450 UNP P95480 GLU 450 ENGINEERED MUTATION SEQRES 1 A 538 MET ASN LYS PRO ILE LYS ASN ILE VAL ILE VAL GLY GLY SEQRES 2 A 538 GLY THR ALA GLY TRP MET ALA ALA SER TYR LEU VAL ARG SEQRES 3 A 538 ALA LEU GLN GLN GLN ALA ASN ILE THR LEU ILE GLU SER SEQRES 4 A 538 ALA ALA ILE PRO ARG ILE GLY VAL GLY GLU ALA THR ILE SEQRES 5 A 538 PRO SER LEU GLN LYS VAL PHE PHE ASP PHE LEU GLY ILE SEQRES 6 A 538 PRO GLU ARG GLU TRP MET PRO GLN VAL ASN GLY ALA PHE SEQRES 7 A 538 LYS ALA ALA ILE LYS PHE VAL ASN TRP ARG LYS SER PRO SEQRES 8 A 538 ASP PRO SER ARG ASP ASP HIS PHE TYR HIS LEU PHE GLY SEQRES 9 A 538 ASN VAL PRO ASN CYS ASP GLY VAL PRO LEU THR HIS TYR SEQRES 10 A 538 TRP LEU ARG LYS ARG GLU GLN GLY PHE GLN GLN PRO MET SEQRES 11 A 538 GLU TYR ALA CYS TYR PRO GLN PRO GLY ALA LEU ASP GLY SEQRES 12 A 538 LYS LEU ALA PRO CYS LEU SER ASP GLY THR ARG GLN MET SEQRES 13 A 538 SER HIS ALA TRP HIS PHE ASP ALA HIS LEU VAL ALA ASP SEQRES 14 A 538 PHE LEU LYS ARG TRP ALA VAL GLU ARG GLY VAL ASN ARG SEQRES 15 A 538 VAL VAL ASP GLU VAL VAL ASP VAL ARG LEU ASN ASN ARG SEQRES 16 A 538 GLY TYR ILE SER ASN LEU LEU THR LYS GLU GLY ARG THR SEQRES 17 A 538 LEU GLU ALA ASP LEU PHE ILE ASP CYS SER GLY MET ARG SEQRES 18 A 538 GLY LEU LEU ILE ASN GLN ALA LEU LYS GLU PRO PHE ILE SEQRES 19 A 538 ASP MET SER ASP TYR LEU LEU CYS ASP SER ALA VAL ALA SEQRES 20 A 538 SER ALA VAL PRO ASN ASP ASP ALA ARG ASP GLY VAL GLU SEQRES 21 A 538 PRO TYR THR SER SER ILE ALA MET ASN SER GLY TRP THR SEQRES 22 A 538 TRP LYS ILE PRO MET LEU GLY ARG PHE GLY SER GLY TYR SEQRES 23 A 538 VAL PHE SER SER HIS PHE THR SER ARG ASP GLN ALA THR SEQRES 24 A 538 ALA ASP PHE LEU LYS LEU TRP GLY LEU SER ASP ASN GLN SEQRES 25 A 538 PRO LEU ASN GLN ILE LYS PHE ARG VAL GLY ARG ASN LYS SEQRES 26 A 538 ARG ALA TRP VAL ASN ASN CYS VAL SER ILE GLY LEU SER SEQRES 27 A 538 SER CYS PHE LEU GLU PRO LEU GLU SER THR GLY ILE TYR SEQRES 28 A 538 PHE ILE TYR ALA ALA LEU TYR GLN LEU VAL LYS HIS PHE SEQRES 29 A 538 PRO ASP THR SER PHE ASP PRO ARG LEU SER ASP ALA PHE SEQRES 30 A 538 ASN ALA GLU ILE VAL HIS MET PHE ASP ASP CYS ARG ASP SEQRES 31 A 538 PHE VAL GLN ALA HIS TYR PHE THR THR SER ARG ASP ASP SEQRES 32 A 538 THR PRO PHE TRP LEU ALA ASN ARG HIS ASP LEU ARG LEU SEQRES 33 A 538 SER ASP ALA ILE LYS GLU LYS VAL GLN ARG TYR LYS ALA SEQRES 34 A 538 GLY LEU PRO LEU THR THR THR SER PHE ASP ASP SER THR SEQRES 35 A 538 TYR TYR GLU THR PHE ASP TYR LYS PHE LYS ASN PHE TRP SEQRES 36 A 538 LEU ASN GLY ASN TYR TYR CYS ILE PHE ALA GLY LEU GLY SEQRES 37 A 538 MET LEU PRO ASP ARG SER LEU PRO LEU LEU GLN HIS ARG SEQRES 38 A 538 PRO GLU SER ILE GLU LYS ALA GLU ALA MET PHE ALA SER SEQRES 39 A 538 ILE ARG ARG GLU ALA GLU ARG LEU ARG THR SER LEU PRO SEQRES 40 A 538 THR ASN TYR ASP TYR LEU ARG SER LEU ARG ASP GLY ASP SEQRES 41 A 538 ALA GLY LEU SER ARG GLY GLN ARG GLY PRO LYS LEU ALA SEQRES 42 A 538 ALA GLN GLU SER LEU HET FAD A 601 53 HET SO4 A 602 5 HET CL A 603 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 SO4 O4 S 2- FORMUL 4 CL CL 1- FORMUL 5 HOH *45(H2 O) HELIX 1 AA1 GLY A 14 LEU A 28 1 15 HELIX 2 AA2 PRO A 53 PHE A 59 1 7 HELIX 3 AA3 PHE A 59 GLY A 64 1 6 HELIX 4 AA4 PRO A 66 MET A 71 1 6 HELIX 5 AA5 PRO A 72 ASN A 75 5 4 HELIX 6 AA6 LEU A 114 GLN A 124 1 11 HELIX 7 AA7 PRO A 129 TYR A 135 1 7 HELIX 8 AA8 GLN A 137 GLY A 143 1 7 HELIX 9 AA9 ASP A 163 ARG A 178 1 16 HELIX 10 AB1 SER A 218 GLY A 222 5 5 HELIX 11 AB2 ASP A 253 GLY A 258 1 6 HELIX 12 AB3 SER A 294 GLY A 307 1 14 HELIX 13 AB4 GLY A 336 SER A 339 5 4 HELIX 14 AB5 THR A 348 HIS A 363 1 16 HELIX 15 AB6 ASP A 370 HIS A 395 1 26 HELIX 16 AB7 THR A 404 ASP A 413 1 10 HELIX 17 AB8 SER A 417 GLY A 430 1 14 HELIX 18 AB9 LEU A 456 LEU A 467 1 12 HELIX 19 AC1 LEU A 475 HIS A 480 5 6 HELIX 20 AC2 ARG A 481 LEU A 506 1 26 HELIX 21 AC3 THR A 508 SER A 515 1 8 SHEET 1 AA1 6 ASN A 181 VAL A 184 0 SHEET 2 AA1 6 ASN A 33 GLU A 38 1 N LEU A 36 O ASN A 181 SHEET 3 AA1 6 ASN A 7 VAL A 11 1 N ILE A 8 O ASN A 33 SHEET 4 AA1 6 LEU A 213 ASP A 216 1 O ILE A 215 N VAL A 11 SHEET 5 AA1 6 CYS A 332 SER A 334 1 O VAL A 333 N PHE A 214 SHEET 6 AA1 6 TRP A 328 VAL A 329 -1 N VAL A 329 O CYS A 332 SHEET 1 AA2 2 ALA A 77 LYS A 79 0 SHEET 2 AA2 2 ALA A 159 HIS A 161 -1 O ALA A 159 N LYS A 79 SHEET 1 AA3 7 HIS A 98 LEU A 102 0 SHEET 2 AA3 7 ALA A 81 VAL A 85 -1 N PHE A 84 O PHE A 99 SHEET 3 AA3 7 THR A 263 ALA A 267 1 O SER A 265 N LYS A 83 SHEET 4 AA3 7 GLY A 271 PRO A 277 -1 O THR A 273 N ILE A 266 SHEET 5 AA3 7 ARG A 281 PHE A 288 -1 O VAL A 287 N TRP A 272 SHEET 6 AA3 7 SER A 244 PRO A 251 -1 N SER A 248 O SER A 284 SHEET 7 AA3 7 ASN A 315 LYS A 318 -1 O ASN A 315 N ALA A 247 SHEET 1 AA4 2 ASN A 108 CYS A 109 0 SHEET 2 AA4 2 VAL A 112 PRO A 113 -1 O VAL A 112 N CYS A 109 SHEET 1 AA5 3 VAL A 187 LEU A 192 0 SHEET 2 AA5 3 ILE A 198 THR A 203 -1 O LEU A 202 N VAL A 188 SHEET 3 AA5 3 THR A 208 GLU A 210 -1 O LEU A 209 N LEU A 201 SHEET 1 AA6 2 PHE A 233 ASP A 235 0 SHEET 2 AA6 2 GLY A 322 ASN A 324 -1 O ARG A 323 N ILE A 234 SITE 1 AC1 32 GLY A 12 GLY A 13 GLY A 14 THR A 15 SITE 2 AC1 32 ALA A 16 SER A 39 ILE A 42 ARG A 44 SITE 3 AC1 32 ILE A 45 VAL A 47 GLY A 48 ALA A 50 SITE 4 AC1 32 GLU A 186 VAL A 187 CYS A 217 SER A 218 SITE 5 AC1 32 GLY A 219 ARG A 221 LEU A 223 GLY A 336 SITE 6 AC1 32 LEU A 337 PHE A 341 PRO A 344 GLY A 349 SITE 7 AC1 32 ILE A 350 CL A 603 HOH A 703 HOH A 705 SITE 8 AC1 32 HOH A 714 HOH A 715 HOH A 738 HOH A 742 SITE 1 AC2 4 MET A 236 ARG A 323 ASP A 386 ARG A 389 SITE 1 AC3 5 PRO A 344 SER A 347 THR A 348 GLY A 349 SITE 2 AC3 5 FAD A 601 CRYST1 68.740 68.740 276.170 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014548 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014548 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003621 0.00000