HEADER STRUCTURAL BIOLOGY, UNKNOWN FUNCTION 01-APR-15 4Z48 TITLE CRYSTAL STRUCTURE OF A DUF1329 FAMILY PROTEIN (DESPIG_00262) FROM TITLE 2 DESULFOVIBRIO PIGER ATCC 29098 AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFOVIBRIO PIGER ATCC 29098; SOURCE 3 ORGANISM_TAXID: 411464; SOURCE 4 GENE: DESPIG_00262; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BACTERIA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION, KEYWDS 3 STRUCTURAL BIOLOGY EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 4Z48 1 SEQADV REVDAT 2 24-JAN-18 4Z48 1 SOURCE KEYWDS JRNL REMARK REVDAT 1 22-APR-15 4Z48 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A DUF1329 FAMILY PROTEIN (DESPIG_00262) JRNL TITL 2 FROM DESULFOVIBRIO PIGER ATCC 29098 AT 1.75 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 52699 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2671 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.55 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3876 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1828 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3658 REMARK 3 BIN R VALUE (WORKING SET) : 0.1806 REMARK 3 BIN FREE R VALUE : 0.2192 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 218 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3938 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 555 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.33750 REMARK 3 B22 (A**2) : -0.33620 REMARK 3 B33 (A**2) : 1.67360 REMARK 3 B12 (A**2) : -0.49680 REMARK 3 B13 (A**2) : 0.87960 REMARK 3 B23 (A**2) : -0.78480 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.272 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4068 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 5489 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1945 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 118 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 589 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4068 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 495 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 4864 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.96 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.91 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|29 - 268} REMARK 3 ORIGIN FOR THE GROUP (A): -18.1724 41.1259 75.4023 REMARK 3 T TENSOR REMARK 3 T11: -0.1157 T22: 0.1983 REMARK 3 T33: -0.0978 T12: 0.0174 REMARK 3 T13: 0.0063 T23: -0.0806 REMARK 3 L TENSOR REMARK 3 L11: 0.6458 L22: 0.5652 REMARK 3 L33: 1.0980 L12: -0.1039 REMARK 3 L13: 0.4501 L23: 0.0309 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.0782 S13: 0.0668 REMARK 3 S21: 0.0317 S22: 0.0317 S23: -0.0076 REMARK 3 S31: -0.1066 S32: -0.0021 S33: 0.0105 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {B|29 - 268} REMARK 3 ORIGIN FOR THE GROUP (A): -4.7126 28.4298 42.3124 REMARK 3 T TENSOR REMARK 3 T11: -0.1302 T22: 0.1891 REMARK 3 T33: -0.1098 T12: 0.0124 REMARK 3 T13: 0.0086 T23: -0.0661 REMARK 3 L TENSOR REMARK 3 L11: 0.8286 L22: 0.7227 REMARK 3 L33: 1.4842 L12: 0.0567 REMARK 3 L13: 0.4204 L23: -0.1307 REMARK 3 S TENSOR REMARK 3 S11: 0.0127 S12: 0.0425 S13: -0.1154 REMARK 3 S21: -0.0360 S22: 0.0916 S23: 0.0202 REMARK 3 S31: -0.0111 S32: -0.1235 S33: -0.1042 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. THE SAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 3. NCS RESTRAINTS WERE IMPOSED BY AUTOBUSTER'S LSSR REMARK 3 PROCEDURE (-AUTONCS). 4. IODINE (IOD), SODIUM (NA), CHLORIDE (CL) REMARK 3 AND PEG FRAGMENTS MODELED ARE PRESENT IN PROTEIN OR REMARK 3 CRYSTALLIZATION CONDITIONS. 5. ATOM RECORDS CONTAIN SUM OF TLS REMARK 3 AND RESIDUAL B FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. REMARK 4 REMARK 4 4Z48 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53315 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 27.549 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : 0.50400 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M SODIUM IODIDE, 20.0000% REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 ALA A 25 REMARK 465 PRO A 26 REMARK 465 ALA A 27 REMARK 465 ILE A 28 REMARK 465 ARG A 269 REMARK 465 GLY B 24 REMARK 465 ALA B 25 REMARK 465 PRO B 26 REMARK 465 ALA B 27 REMARK 465 ILE B 28 REMARK 465 ARG B 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 29 OG1 CG2 REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 ASP A 80 CG OD1 OD2 REMARK 470 THR B 29 OG1 CG2 REMARK 470 LYS B 79 CG CD CE NZ REMARK 470 ASP B 80 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 267 -74.24 -73.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 690 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 691 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B 664 DISTANCE = 6.94 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 106 O REMARK 620 2 GLY B 108 O 98.5 REMARK 620 3 ASP B 152 OD2 83.5 96.8 REMARK 620 4 GLU B 155 OE2 160.4 99.4 86.5 REMARK 620 5 HOH B 436 O 91.9 94.8 168.1 94.5 REMARK 620 6 HOH B 512 O 73.2 171.4 80.4 88.6 87.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 307 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-420525 RELATED DB: TARGETTRACK DBREF 4Z48 A 25 269 UNP B6WQE2 B6WQE2_9DELT 25 269 DBREF 4Z48 B 25 269 UNP B6WQE2 B6WQE2_9DELT 25 269 SEQADV 4Z48 GLY A 24 UNP B6WQE2 EXPRESSION TAG SEQADV 4Z48 GLY B 24 UNP B6WQE2 EXPRESSION TAG SEQRES 1 A 246 GLY ALA PRO ALA ILE THR ASP PRO VAL LYS ALA GLY TYR SEQRES 2 A 246 ASP LEU ALA VAL ARG MSE ASP GLN VAL ASP THR SER GLN SEQRES 3 A 246 ASP SER TYR SER GLU ALA VAL MSE SER ILE ASN ARG GLY SEQRES 4 A 246 GLY LYS VAL LEU THR ARG SER PHE LYS THR TYR SER LYS SEQRES 5 A 246 HIS PHE GLY LYS ASP GLY LYS ASP GLU TYR SER LEU ILE SEQRES 6 A 246 VAL PHE ASP ARG PRO ALA ASP VAL ASN GLY THR LYS TYR SEQRES 7 A 246 LEU VAL TRP SER TYR ARG GLY LEU GLU GLN ASP ASP ASP SEQRES 8 A 246 MSE TRP VAL TYR LEU PRO ALA GLU SER LEU VAL ARG ARG SEQRES 9 A 246 ILE SER GLY SER SER LYS PHE ALA SER PHE MSE ARG SER SEQRES 10 A 246 ASP LEU SER ASN GLU ASP ILE GLN ASN LEU ASP ASP VAL SEQRES 11 A 246 ASP GLU TYR ASP TYR LEU LEU GLN GLY GLU GLU ASN VAL SEQRES 12 A 246 ASP GLY ILE ASP CYS TYR ILE LEU GLU ARG THR PRO LYS SEQRES 13 A 246 LYS GLY LYS GLU THR GLN TYR SER ARG GLN VAL GLN TRP SEQRES 14 A 246 VAL ARG LYS ASP THR LEU LEU ARG LEU ARG ALA ASP TYR SEQRES 15 A 246 TYR ASP LYS LYS ASP ARG LEU VAL LYS LYS LEU PHE PHE SEQRES 16 A 246 SER ARG GLN GLU LYS ILE ASP GLY ILE TRP THR VAL THR SEQRES 17 A 246 GLN MSE ARG VAL GLU ARG PRO ARG GLU GLY SER PHE THR SEQRES 18 A 246 VAL ILE ASP TRP SER ASN LEU ARG TYR ASP VAL GLY LEU SEQRES 19 A 246 SER ASP ALA TYR PHE GLU HIS SER ALA LEU GLN ARG SEQRES 1 B 246 GLY ALA PRO ALA ILE THR ASP PRO VAL LYS ALA GLY TYR SEQRES 2 B 246 ASP LEU ALA VAL ARG MSE ASP GLN VAL ASP THR SER GLN SEQRES 3 B 246 ASP SER TYR SER GLU ALA VAL MSE SER ILE ASN ARG GLY SEQRES 4 B 246 GLY LYS VAL LEU THR ARG SER PHE LYS THR TYR SER LYS SEQRES 5 B 246 HIS PHE GLY LYS ASP GLY LYS ASP GLU TYR SER LEU ILE SEQRES 6 B 246 VAL PHE ASP ARG PRO ALA ASP VAL ASN GLY THR LYS TYR SEQRES 7 B 246 LEU VAL TRP SER TYR ARG GLY LEU GLU GLN ASP ASP ASP SEQRES 8 B 246 MSE TRP VAL TYR LEU PRO ALA GLU SER LEU VAL ARG ARG SEQRES 9 B 246 ILE SER GLY SER SER LYS PHE ALA SER PHE MSE ARG SER SEQRES 10 B 246 ASP LEU SER ASN GLU ASP ILE GLN ASN LEU ASP ASP VAL SEQRES 11 B 246 ASP GLU TYR ASP TYR LEU LEU GLN GLY GLU GLU ASN VAL SEQRES 12 B 246 ASP GLY ILE ASP CYS TYR ILE LEU GLU ARG THR PRO LYS SEQRES 13 B 246 LYS GLY LYS GLU THR GLN TYR SER ARG GLN VAL GLN TRP SEQRES 14 B 246 VAL ARG LYS ASP THR LEU LEU ARG LEU ARG ALA ASP TYR SEQRES 15 B 246 TYR ASP LYS LYS ASP ARG LEU VAL LYS LYS LEU PHE PHE SEQRES 16 B 246 SER ARG GLN GLU LYS ILE ASP GLY ILE TRP THR VAL THR SEQRES 17 B 246 GLN MSE ARG VAL GLU ARG PRO ARG GLU GLY SER PHE THR SEQRES 18 B 246 VAL ILE ASP TRP SER ASN LEU ARG TYR ASP VAL GLY LEU SEQRES 19 B 246 SER ASP ALA TYR PHE GLU HIS SER ALA LEU GLN ARG MODRES 4Z48 MSE A 42 MET MODIFIED RESIDUE MODRES 4Z48 MSE A 57 MET MODIFIED RESIDUE MODRES 4Z48 MSE A 115 MET MODIFIED RESIDUE MODRES 4Z48 MSE A 138 MET MODIFIED RESIDUE MODRES 4Z48 MSE A 233 MET MODIFIED RESIDUE MODRES 4Z48 MSE B 42 MET MODIFIED RESIDUE MODRES 4Z48 MSE B 57 MET MODIFIED RESIDUE MODRES 4Z48 MSE B 115 MET MODIFIED RESIDUE MODRES 4Z48 MSE B 138 MET MODIFIED RESIDUE MODRES 4Z48 MSE B 233 MET MODIFIED RESIDUE HET MSE A 42 8 HET MSE A 57 8 HET MSE A 115 8 HET MSE A 138 8 HET MSE A 233 8 HET MSE B 42 8 HET MSE B 57 8 HET MSE B 115 8 HET MSE B 138 8 HET MSE B 233 8 HET IOD A 301 1 HET IOD A 302 1 HET IOD A 303 1 HET CL A 304 1 HET 1PE B 301 16 HET IOD B 302 1 HET IOD B 303 1 HET IOD B 304 1 HET IOD B 305 1 HET CL B 306 1 HET NA B 307 1 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION HETNAM CL CHLORIDE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM NA SODIUM ION HETSYN 1PE PEG400 FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 IOD 7(I 1-) FORMUL 6 CL 2(CL 1-) FORMUL 7 1PE C10 H22 O6 FORMUL 13 NA NA 1+ FORMUL 14 HOH *555(H2 O) HELIX 1 AA1 ASP A 30 GLN A 44 1 15 HELIX 2 AA2 SER A 129 ALA A 135 5 7 HELIX 3 AA3 SER A 143 GLN A 148 5 6 HELIX 4 AA4 ASP A 152 ASP A 154 5 3 HELIX 5 AA5 SER A 258 LEU A 267 5 10 HELIX 6 AA6 ASP B 30 GLN B 44 1 15 HELIX 7 AA7 SER B 129 ALA B 135 5 7 HELIX 8 AA8 SER B 143 GLN B 148 5 6 HELIX 9 AA9 ASP B 152 ASP B 154 5 3 HELIX 10 AB1 SER B 258 LEU B 267 5 10 SHEET 1 AA113 LEU A 124 ARG A 127 0 SHEET 2 AA113 ASP A 114 LEU A 119 -1 N LEU A 119 O LEU A 124 SHEET 3 AA113 LYS A 100 SER A 105 -1 N LYS A 100 O TYR A 118 SHEET 4 AA113 ASP A 83 ARG A 92 -1 N SER A 86 O VAL A 103 SHEET 5 AA113 LYS A 64 PHE A 77 -1 N LYS A 75 O TYR A 85 SHEET 6 AA113 ASP A 50 ARG A 61 -1 N ILE A 59 O LEU A 66 SHEET 7 AA113 SER A 242 TYR A 253 -1 O PHE A 243 N ASN A 60 SHEET 8 AA113 ILE A 227 ARG A 237 -1 N VAL A 235 O THR A 244 SHEET 9 AA113 LEU A 212 ILE A 224 -1 N LYS A 215 O GLU A 236 SHEET 10 AA113 ARG A 200 ASP A 207 -1 N ALA A 203 O LEU A 216 SHEET 11 AA113 TYR A 186 ARG A 194 -1 N TRP A 192 O LEU A 201 SHEET 12 AA113 ILE A 169 PRO A 178 -1 N LEU A 174 O GLN A 191 SHEET 13 AA113 TYR A 156 VAL A 166 -1 N VAL A 166 O ILE A 169 SHEET 1 AA213 LEU B 124 ARG B 127 0 SHEET 2 AA213 ASP B 114 LEU B 119 -1 N LEU B 119 O LEU B 124 SHEET 3 AA213 LYS B 100 SER B 105 -1 N TRP B 104 O ASP B 114 SHEET 4 AA213 ASP B 83 ARG B 92 -1 N SER B 86 O VAL B 103 SHEET 5 AA213 LYS B 64 PHE B 77 -1 N LYS B 75 O TYR B 85 SHEET 6 AA213 ASP B 50 ARG B 61 -1 N ILE B 59 O LEU B 66 SHEET 7 AA213 SER B 242 TYR B 253 -1 O PHE B 243 N ASN B 60 SHEET 8 AA213 ILE B 227 ARG B 237 -1 N VAL B 235 O THR B 244 SHEET 9 AA213 LEU B 212 ILE B 224 -1 N LYS B 215 O GLU B 236 SHEET 10 AA213 ARG B 200 ASP B 207 -1 N ALA B 203 O LEU B 216 SHEET 11 AA213 TYR B 186 ARG B 194 -1 N TRP B 192 O LEU B 201 SHEET 12 AA213 ILE B 169 PRO B 178 -1 N LEU B 174 O GLN B 191 SHEET 13 AA213 TYR B 156 VAL B 166 -1 N VAL B 166 O ILE B 169 LINK C ARG A 41 N MSE A 42 1555 1555 1.35 LINK C MSE A 42 N ASP A 43 1555 1555 1.34 LINK C VAL A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N SER A 58 1555 1555 1.32 LINK C ASP A 114 N MSE A 115 1555 1555 1.30 LINK C MSE A 115 N TRP A 116 1555 1555 1.32 LINK C PHE A 137 N MSE A 138 1555 1555 1.35 LINK C MSE A 138 N ARG A 139 1555 1555 1.36 LINK C GLN A 232 N MSE A 233 1555 1555 1.32 LINK C MSE A 233 N ARG A 234 1555 1555 1.33 LINK C ARG B 41 N MSE B 42 1555 1555 1.34 LINK C MSE B 42 N ASP B 43 1555 1555 1.34 LINK C VAL B 56 N MSE B 57 1555 1555 1.32 LINK C MSE B 57 N SER B 58 1555 1555 1.32 LINK C ASP B 114 N MSE B 115 1555 1555 1.33 LINK C MSE B 115 N TRP B 116 1555 1555 1.32 LINK C PHE B 137 N MSE B 138 1555 1555 1.34 LINK C MSE B 138 N ARG B 139 1555 1555 1.34 LINK C GLN B 232 N MSE B 233 1555 1555 1.33 LINK C MSE B 233 N ARG B 234 1555 1555 1.32 LINK O TYR B 106 NA NA B 307 1555 1555 2.30 LINK O GLY B 108 NA NA B 307 1555 1555 2.24 LINK OD2 ASP B 152 NA NA B 307 1555 1555 2.31 LINK OE2 GLU B 155 NA NA B 307 1555 1555 2.31 LINK NA NA B 307 O HOH B 436 1555 1555 2.23 LINK NA NA B 307 O HOH B 512 1555 1555 2.53 CISPEP 1 ARG A 92 PRO A 93 0 -6.98 CISPEP 2 ARG B 92 PRO B 93 0 -8.45 SITE 1 AC1 1 ARG A 68 SITE 1 AC2 1 ARG A 92 SITE 1 AC3 1 ARG A 127 SITE 1 AC4 9 PHE B 70 THR B 72 LEU B 142 ILE B 147 SITE 2 AC4 9 THR B 229 VAL B 230 TRP B 248 HOH B 433 SITE 3 AC4 9 HOH B 523 SITE 1 AC5 1 ARG B 211 SITE 1 AC6 3 HOH A 468 ARG B 68 ARG B 139 SITE 1 AC7 1 GLN A 232 SITE 1 AC8 2 GLU B 222 LYS B 223 SITE 1 AC9 1 ARG B 139 SITE 1 AD1 6 TYR B 106 GLY B 108 ASP B 152 GLU B 155 SITE 2 AD1 6 HOH B 436 HOH B 512 CRYST1 42.400 56.340 65.560 100.71 97.04 109.01 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023585 0.008126 0.005015 0.00000 SCALE2 0.000000 0.018773 0.004653 0.00000 SCALE3 0.000000 0.000000 0.015834 0.00000