HEADER GENE REGULATION/RNA 02-APR-15 4Z4G TITLE HUMAN ARGONAUTE2 BOUND TO T1-INOSINE TARGET RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGONAUTE-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HAGO2,ARGONAUTE RISC CATALYTIC COMPONENT 2,EUKARYOTIC COMPND 5 TRANSLATION INITIATION FACTOR 2C 2,EIF2C 2,PAZ PIWI DOMAIN PROTEIN, COMPND 6 PPD,PROTEIN SLICER; COMPND 7 EC: 3.1.26.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: RNA (5'- COMPND 12 R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3'); COMPND 13 CHAIN: B; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-D(P*(IMP))-3'); COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGO2, EIF2C2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF-9; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS ARGONAUTE2, GENE REGULATION-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.T.SCHIRLE,I.J.MACRAE REVDAT 4 27-SEP-23 4Z4G 1 LINK REVDAT 3 25-DEC-19 4Z4G 1 REMARK REVDAT 2 20-SEP-17 4Z4G 1 REMARK REVDAT 1 23-SEP-15 4Z4G 0 JRNL AUTH N.T.SCHIRLE,J.SHEU-GRUTTADAURIA,S.D.CHANDRADOSS,C.JOO, JRNL AUTH 2 I.J.MACRAE JRNL TITL WATER-MEDIATED RECOGNITION OF T1-ADENOSINE ANCHORS JRNL TITL 2 ARGONAUTE2 TO MICRORNA TARGETS. JRNL REF ELIFE V. 4 2015 JRNL REFN ESSN 2050-084X JRNL PMID 26359634 JRNL DOI 10.7554/ELIFE.07646 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 24033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.840 REMARK 3 FREE R VALUE TEST SET COUNT : 1163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.4107 - 5.3873 0.96 2864 156 0.1642 0.1851 REMARK 3 2 5.3873 - 4.2784 0.96 2840 146 0.1534 0.2071 REMARK 3 3 4.2784 - 3.7383 0.98 2903 159 0.1585 0.1979 REMARK 3 4 3.7383 - 3.3968 0.97 2836 157 0.1830 0.2391 REMARK 3 5 3.3968 - 3.1535 0.99 2908 134 0.1901 0.2468 REMARK 3 6 3.1535 - 2.9676 0.99 2918 146 0.2086 0.2479 REMARK 3 7 2.9676 - 2.8191 0.99 2907 138 0.2291 0.3145 REMARK 3 8 2.8191 - 2.6964 0.92 2694 127 0.2471 0.3356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 7216 REMARK 3 ANGLE : 0.989 9883 REMARK 3 CHIRALITY : 0.061 1117 REMARK 3 PLANARITY : 0.003 1176 REMARK 3 DIHEDRAL : 12.944 2798 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z4G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208618. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24061 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.06400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4W5O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, TRIS, ISOPROPANOL, PHENOL, REMARK 280 MAGNESIUM, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 58.52050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 SER A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 PRO A 14 REMARK 465 PRO A 15 REMARK 465 PRO A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 GLN A 19 REMARK 465 GLY A 20 REMARK 465 TYR A 21 REMARK 465 ASP A 89 REMARK 465 ARG A 90 REMARK 465 GLY A 121 REMARK 465 GLU A 122 REMARK 465 GLY A 123 REMARK 465 LYS A 124 REMARK 465 ASP A 125 REMARK 465 ARG A 126 REMARK 465 THR A 270 REMARK 465 HIS A 271 REMARK 465 CYS A 272 REMARK 465 GLY A 273 REMARK 465 GLN A 274 REMARK 465 MET A 275 REMARK 465 PRO A 295 REMARK 465 LEU A 296 REMARK 465 GLN A 297 REMARK 465 GLN A 298 REMARK 465 GLU A 299 REMARK 465 SER A 300 REMARK 465 GLY A 301 REMARK 465 GLN A 302 REMARK 465 THR A 303 REMARK 465 VAL A 304 REMARK 465 GLU A 305 REMARK 465 HIS A 822 REMARK 465 ASP A 823 REMARK 465 SER A 824 REMARK 465 ALA A 825 REMARK 465 GLU A 826 REMARK 465 GLY A 827 REMARK 465 SER A 828 REMARK 465 HIS A 829 REMARK 465 THR A 830 REMARK 465 SER A 831 REMARK 465 GLY A 832 REMARK 465 GLN A 833 REMARK 465 SER A 834 REMARK 465 ASN A 835 REMARK 465 C B 19 REMARK 465 A D 10 REMARK 465 A D 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U B 18 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U B 18 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U B 18 C5 C6 REMARK 470 IMP D 9 C5' C4' O4' C3' O3' C2' O2' REMARK 470 IMP D 9 C1' N9 C8 N7 C5 C6 O6 REMARK 470 IMP D 9 N1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 107 CD PRO A 107 N 0.157 REMARK 500 U B 1 P U B 1 OP3 -0.200 REMARK 500 U B 1 O3' U B 2 P -0.077 REMARK 500 U B 2 O3' C B 3 P -0.089 REMARK 500 C B 3 O3' A B 4 P -0.078 REMARK 500 A B 4 O3' C B 5 P -0.115 REMARK 500 C B 5 O3' A B 6 P -0.092 REMARK 500 A B 6 O3' U B 7 P -0.098 REMARK 500 U B 7 O3' U B 8 P -0.072 REMARK 500 U B 8 O3' G B 9 P -0.073 REMARK 500 C B 11 O3' C B 12 P -0.085 REMARK 500 C B 12 O3' A B 13 P -0.072 REMARK 500 C D 1 O3' A D 2 P -0.083 REMARK 500 A D 2 O3' A D 3 P -0.092 REMARK 500 U D 4 O3' G D 5 P -0.080 REMARK 500 G D 5 O3' U D 6 P -0.089 REMARK 500 U D 6 O3' G D 7 P -0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 84 N - CA - C ANGL. DEV. = 16.8 DEGREES REMARK 500 GLN A 85 N - CA - CB ANGL. DEV. = -24.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 -175.88 -179.29 REMARK 500 ASN A 43 39.85 -81.31 REMARK 500 ARG A 97 -78.44 -127.89 REMARK 500 LYS A 98 -8.63 -142.78 REMARK 500 ILE A 108 -44.57 -138.63 REMARK 500 ASN A 190 78.48 -115.39 REMARK 500 TRP A 211 -80.19 -94.26 REMARK 500 GLN A 246 -164.35 -112.57 REMARK 500 GLN A 292 107.92 -55.22 REMARK 500 ASN A 623 -55.05 -140.66 REMARK 500 LYS A 696 -137.28 52.73 REMARK 500 ASP A 697 3.23 84.70 REMARK 500 LYS A 739 -59.75 66.04 REMARK 500 ASP A 770 88.62 -156.72 REMARK 500 MET A 856 55.89 -105.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 597 OD1 REMARK 620 2 VAL A 598 O 98.3 REMARK 620 3 HOH A1001 O 80.5 173.0 REMARK 620 4 HOH A1014 O 95.7 94.5 92.5 REMARK 620 5 HOH A1045 O 83.6 85.8 87.2 179.3 REMARK 620 6 HOH A1079 O 163.7 98.0 83.4 82.6 98.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U D 4 O4 REMARK 620 2 HOH D 202 O 88.9 REMARK 620 3 HOH D 204 O 89.2 170.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPH A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPH A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPH A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPH A 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z4C RELATED DB: PDB REMARK 900 RELATED ID: 4Z4D RELATED DB: PDB REMARK 900 RELATED ID: 4Z4E RELATED DB: PDB REMARK 900 RELATED ID: 4Z4F RELATED DB: PDB REMARK 900 RELATED ID: 4Z4H RELATED DB: PDB REMARK 900 RELATED ID: 4Z4I RELATED DB: PDB DBREF 4Z4G A 1 859 UNP Q9UKV8 AGO2_HUMAN 1 859 DBREF 4Z4G B 1 21 PDB 4Z4G 4Z4G 1 21 DBREF 4Z4G D 1 11 PDB 4Z4G 4Z4G 1 11 SEQADV 4Z4G ASP A 387 UNP Q9UKV8 SER 387 ENGINEERED MUTATION SEQRES 1 A 859 MET TYR SER GLY ALA GLY PRO ALA LEU ALA PRO PRO ALA SEQRES 2 A 859 PRO PRO PRO PRO ILE GLN GLY TYR ALA PHE LYS PRO PRO SEQRES 3 A 859 PRO ARG PRO ASP PHE GLY THR SER GLY ARG THR ILE LYS SEQRES 4 A 859 LEU GLN ALA ASN PHE PHE GLU MET ASP ILE PRO LYS ILE SEQRES 5 A 859 ASP ILE TYR HIS TYR GLU LEU ASP ILE LYS PRO GLU LYS SEQRES 6 A 859 CYS PRO ARG ARG VAL ASN ARG GLU ILE VAL GLU HIS MET SEQRES 7 A 859 VAL GLN HIS PHE LYS THR GLN ILE PHE GLY ASP ARG LYS SEQRES 8 A 859 PRO VAL PHE ASP GLY ARG LYS ASN LEU TYR THR ALA MET SEQRES 9 A 859 PRO LEU PRO ILE GLY ARG ASP LYS VAL GLU LEU GLU VAL SEQRES 10 A 859 THR LEU PRO GLY GLU GLY LYS ASP ARG ILE PHE LYS VAL SEQRES 11 A 859 SER ILE LYS TRP VAL SER CYS VAL SER LEU GLN ALA LEU SEQRES 12 A 859 HIS ASP ALA LEU SER GLY ARG LEU PRO SER VAL PRO PHE SEQRES 13 A 859 GLU THR ILE GLN ALA LEU ASP VAL VAL MET ARG HIS LEU SEQRES 14 A 859 PRO SER MET ARG TYR THR PRO VAL GLY ARG SER PHE PHE SEQRES 15 A 859 THR ALA SER GLU GLY CYS SER ASN PRO LEU GLY GLY GLY SEQRES 16 A 859 ARG GLU VAL TRP PHE GLY PHE HIS GLN SER VAL ARG PRO SEQRES 17 A 859 SER LEU TRP LYS MET MET LEU ASN ILE ASP VAL SER ALA SEQRES 18 A 859 THR ALA PHE TYR LYS ALA GLN PRO VAL ILE GLU PHE VAL SEQRES 19 A 859 CYS GLU VAL LEU ASP PHE LYS SER ILE GLU GLU GLN GLN SEQRES 20 A 859 LYS PRO LEU THR ASP SER GLN ARG VAL LYS PHE THR LYS SEQRES 21 A 859 GLU ILE LYS GLY LEU LYS VAL GLU ILE THR HIS CYS GLY SEQRES 22 A 859 GLN MET LYS ARG LYS TYR ARG VAL CYS ASN VAL THR ARG SEQRES 23 A 859 ARG PRO ALA SER HIS GLN THR PHE PRO LEU GLN GLN GLU SEQRES 24 A 859 SER GLY GLN THR VAL GLU CYS THR VAL ALA GLN TYR PHE SEQRES 25 A 859 LYS ASP ARG HIS LYS LEU VAL LEU ARG TYR PRO HIS LEU SEQRES 26 A 859 PRO CYS LEU GLN VAL GLY GLN GLU GLN LYS HIS THR TYR SEQRES 27 A 859 LEU PRO LEU GLU VAL CYS ASN ILE VAL ALA GLY GLN ARG SEQRES 28 A 859 CYS ILE LYS LYS LEU THR ASP ASN GLN THR SER THR MET SEQRES 29 A 859 ILE ARG ALA THR ALA ARG SER ALA PRO ASP ARG GLN GLU SEQRES 30 A 859 GLU ILE SER LYS LEU MET ARG SER ALA ASP PHE ASN THR SEQRES 31 A 859 ASP PRO TYR VAL ARG GLU PHE GLY ILE MET VAL LYS ASP SEQRES 32 A 859 GLU MET THR ASP VAL THR GLY ARG VAL LEU GLN PRO PRO SEQRES 33 A 859 SER ILE LEU TYR GLY GLY ARG ASN LYS ALA ILE ALA THR SEQRES 34 A 859 PRO VAL GLN GLY VAL TRP ASP MET ARG ASN LYS GLN PHE SEQRES 35 A 859 HIS THR GLY ILE GLU ILE LYS VAL TRP ALA ILE ALA CYS SEQRES 36 A 859 PHE ALA PRO GLN ARG GLN CYS THR GLU VAL HIS LEU LYS SEQRES 37 A 859 SER PHE THR GLU GLN LEU ARG LYS ILE SER ARG ASP ALA SEQRES 38 A 859 GLY MET PRO ILE GLN GLY GLN PRO CYS PHE CYS LYS TYR SEQRES 39 A 859 ALA GLN GLY ALA ASP SER VAL GLU PRO MET PHE ARG HIS SEQRES 40 A 859 LEU LYS ASN THR TYR ALA GLY LEU GLN LEU VAL VAL VAL SEQRES 41 A 859 ILE LEU PRO GLY LYS THR PRO VAL TYR ALA GLU VAL LYS SEQRES 42 A 859 ARG VAL GLY ASP THR VAL LEU GLY MET ALA THR GLN CYS SEQRES 43 A 859 VAL GLN MET LYS ASN VAL GLN ARG THR THR PRO GLN THR SEQRES 44 A 859 LEU SER ASN LEU CYS LEU LYS ILE ASN VAL LYS LEU GLY SEQRES 45 A 859 GLY VAL ASN ASN ILE LEU LEU PRO GLN GLY ARG PRO PRO SEQRES 46 A 859 VAL PHE GLN GLN PRO VAL ILE PHE LEU GLY ALA ASP VAL SEQRES 47 A 859 THR HIS PRO PRO ALA GLY ASP GLY LYS LYS PRO SER ILE SEQRES 48 A 859 ALA ALA VAL VAL GLY SER MET ASP ALA HIS PRO ASN ARG SEQRES 49 A 859 TYR CYS ALA THR VAL ARG VAL GLN GLN HIS ARG GLN GLU SEQRES 50 A 859 ILE ILE GLN ASP LEU ALA ALA MET VAL ARG GLU LEU LEU SEQRES 51 A 859 ILE GLN PHE TYR LYS SER THR ARG PHE LYS PRO THR ARG SEQRES 52 A 859 ILE ILE PHE TYR ARG ASP GLY VAL SER GLU GLY GLN PHE SEQRES 53 A 859 GLN GLN VAL LEU HIS HIS GLU LEU LEU ALA ILE ARG GLU SEQRES 54 A 859 ALA CYS ILE LYS LEU GLU LYS ASP TYR GLN PRO GLY ILE SEQRES 55 A 859 THR PHE ILE VAL VAL GLN LYS ARG HIS HIS THR ARG LEU SEQRES 56 A 859 PHE CYS THR ASP LYS ASN GLU ARG VAL GLY LYS SER GLY SEQRES 57 A 859 ASN ILE PRO ALA GLY THR THR VAL ASP THR LYS ILE THR SEQRES 58 A 859 HIS PRO THR GLU PHE ASP PHE TYR LEU CYS SER HIS ALA SEQRES 59 A 859 GLY ILE GLN GLY THR SER ARG PRO SER HIS TYR HIS VAL SEQRES 60 A 859 LEU TRP ASP ASP ASN ARG PHE SER SER ASP GLU LEU GLN SEQRES 61 A 859 ILE LEU THR TYR GLN LEU CYS HIS THR TYR VAL ARG CYS SEQRES 62 A 859 THR ARG SER VAL SER ILE PRO ALA PRO ALA TYR TYR ALA SEQRES 63 A 859 HIS LEU VAL ALA PHE ARG ALA ARG TYR HIS LEU VAL ASP SEQRES 64 A 859 LYS GLU HIS ASP SER ALA GLU GLY SER HIS THR SER GLY SEQRES 65 A 859 GLN SER ASN GLY ARG ASP HIS GLN ALA LEU ALA LYS ALA SEQRES 66 A 859 VAL GLN VAL HIS GLN ASP THR LEU ARG THR MET TYR PHE SEQRES 67 A 859 ALA SEQRES 1 B 21 U U C A C A U U G C C C A SEQRES 2 B 21 A G U C U C U U SEQRES 1 D 11 C A A U G U G A IMP A A HET IMP D 9 4 HET MG A 901 1 HET IPH A 902 7 HET IPH A 903 7 HET IPH A 904 7 HET IPH A 905 7 HET MG B 101 1 HET MG D 101 1 HETNAM IMP INOSINIC ACID HETNAM MG MAGNESIUM ION HETNAM IPH PHENOL FORMUL 3 IMP C10 H13 N4 O8 P FORMUL 4 MG 3(MG 2+) FORMUL 5 IPH 4(C6 H6 O) FORMUL 11 HOH *105(H2 O) HELIX 1 AA1 PRO A 67 HIS A 81 1 15 HELIX 2 AA2 LEU A 140 SER A 148 1 9 HELIX 3 AA3 PRO A 155 HIS A 168 1 14 HELIX 4 AA4 LEU A 169 TYR A 174 1 6 HELIX 5 AA5 PRO A 229 ASP A 239 1 11 HELIX 6 AA6 THR A 251 LYS A 263 1 13 HELIX 7 AA7 THR A 307 ARG A 315 1 9 HELIX 8 AA8 GLU A 342 CYS A 344 5 3 HELIX 9 AA9 THR A 357 ALA A 369 1 13 HELIX 10 AB1 SER A 371 ASP A 387 1 17 HELIX 11 AB2 ASP A 391 PHE A 397 1 7 HELIX 12 AB3 THR A 463 GLY A 482 1 20 HELIX 13 AB4 GLY A 497 ASP A 499 5 3 HELIX 14 AB5 SER A 500 TYR A 512 1 13 HELIX 15 AB6 PRO A 527 THR A 538 1 12 HELIX 16 AB7 MET A 549 ARG A 554 1 6 HELIX 17 AB8 THR A 556 LEU A 571 1 16 HELIX 18 AB9 PRO A 580 ARG A 583 5 4 HELIX 19 AC1 PRO A 584 GLN A 589 5 6 HELIX 20 AC2 ASP A 641 ARG A 658 1 18 HELIX 21 AC3 SER A 672 GLY A 674 5 3 HELIX 22 AC4 GLN A 675 LYS A 693 1 19 HELIX 23 AC5 SER A 775 CYS A 787 1 13 HELIX 24 AC6 PRO A 800 LEU A 817 1 18 HELIX 25 AC7 ARG A 837 VAL A 846 1 10 SHEET 1 AA111 TYR A 625 GLN A 632 0 SHEET 2 AA111 SER A 610 SER A 617 -1 N VAL A 614 O THR A 628 SHEET 3 AA111 VAL A 591 THR A 599 -1 N ASP A 597 O ALA A 613 SHEET 4 AA111 ARG A 663 ASP A 669 1 O TYR A 667 N LEU A 594 SHEET 5 AA111 GLY A 701 GLN A 708 1 O ILE A 705 N ARG A 668 SHEET 6 AA111 SER A 763 ASP A 770 -1 O TRP A 769 N PHE A 704 SHEET 7 AA111 ASP A 747 CYS A 751 -1 N LEU A 750 O SER A 763 SHEET 8 AA111 THR A 734 VAL A 736 -1 N VAL A 736 O TYR A 749 SHEET 9 AA111 THR A 406 VAL A 412 -1 N ARG A 411 O THR A 735 SHEET 10 AA111 ARG A 36 ALA A 42 -1 N ARG A 36 O VAL A 412 SHEET 11 AA111 LEU A 715 CYS A 717 -1 O PHE A 716 N GLN A 41 SHEET 1 AA2 4 THR A 175 VAL A 177 0 SHEET 2 AA2 4 SER A 180 THR A 183 -1 O PHE A 182 N THR A 175 SHEET 3 AA2 4 ARG A 196 ARG A 207 -1 O PHE A 202 N PHE A 181 SHEET 4 AA2 4 PRO A 191 GLY A 193 -1 N LEU A 192 O ARG A 196 SHEET 1 AA3 6 THR A 175 VAL A 177 0 SHEET 2 AA3 6 SER A 180 THR A 183 -1 O PHE A 182 N THR A 175 SHEET 3 AA3 6 ARG A 196 ARG A 207 -1 O PHE A 202 N PHE A 181 SHEET 4 AA3 6 MET A 213 TYR A 225 -1 O ASP A 218 N HIS A 203 SHEET 5 AA3 6 PHE A 44 ASP A 48 -1 N PHE A 45 O LEU A 215 SHEET 6 AA3 6 MET A 400 VAL A 401 -1 O MET A 400 N ASP A 48 SHEET 1 AA4 4 VAL A 93 PHE A 94 0 SHEET 2 AA4 4 ASN A 99 THR A 102 -1 O TYR A 101 N VAL A 93 SHEET 3 AA4 4 ASP A 53 GLU A 58 -1 N TYR A 55 O THR A 102 SHEET 4 AA4 4 LYS A 133 SER A 139 -1 O VAL A 138 N ILE A 54 SHEET 1 AA5 3 ILE A 61 LYS A 62 0 SHEET 2 AA5 3 PHE A 128 VAL A 130 -1 O LYS A 129 N LYS A 62 SHEET 3 AA5 3 LEU A 115 VAL A 117 -1 N LEU A 115 O VAL A 130 SHEET 1 AA6 5 TYR A 338 PRO A 340 0 SHEET 2 AA6 5 CYS A 327 VAL A 330 -1 N LEU A 328 O LEU A 339 SHEET 3 AA6 5 LYS A 278 VAL A 284 -1 N ASN A 283 O GLN A 329 SHEET 4 AA6 5 LYS A 266 GLU A 268 -1 N VAL A 267 O TYR A 279 SHEET 5 AA6 5 ASN A 345 ILE A 346 -1 O ASN A 345 N GLU A 268 SHEET 1 AA7 3 ILE A 427 ALA A 428 0 SHEET 2 AA7 3 ILE A 418 LEU A 419 -1 N ILE A 418 O ALA A 428 SHEET 3 AA7 3 ILE A 577 LEU A 578 -1 O ILE A 577 N LEU A 419 SHEET 1 AA8 4 PHE A 491 TYR A 494 0 SHEET 2 AA8 4 TRP A 451 CYS A 455 1 N ILE A 453 O PHE A 491 SHEET 3 AA8 4 LEU A 517 LEU A 522 1 O VAL A 519 N ALA A 452 SHEET 4 AA8 4 THR A 544 GLN A 548 1 O VAL A 547 N VAL A 520 LINK O3' A D 8 P IMP D 9 1555 1555 1.61 LINK OD1 ASP A 597 MG MG A 901 1555 1555 2.13 LINK O VAL A 598 MG MG A 901 1555 1555 1.99 LINK MG MG A 901 O HOH A1001 1555 1555 2.04 LINK MG MG A 901 O HOH A1014 1555 1555 2.30 LINK MG MG A 901 O HOH A1045 1555 1555 2.10 LINK MG MG A 901 O HOH A1079 1555 1555 2.13 LINK OP2 A B 13 MG MG B 101 1555 1555 2.31 LINK O4 U D 4 MG MG D 101 1555 1555 2.15 LINK MG MG D 101 O HOH D 202 1555 1555 2.24 LINK MG MG D 101 O HOH D 204 1555 1555 2.05 CISPEP 1 LYS A 62 PRO A 63 0 0.51 CISPEP 2 GLU A 245 GLN A 246 0 0.45 CISPEP 3 HIS A 621 PRO A 622 0 -5.79 CISPEP 4 LYS A 696 ASP A 697 0 -12.48 SITE 1 AC1 6 ASP A 597 VAL A 598 HOH A1001 HOH A1014 SITE 2 AC1 6 HOH A1045 HOH A1079 SITE 1 AC2 5 ARG A 688 TYR A 698 GLN A 699 PRO A 700 SITE 2 AC2 5 ASP A 771 SITE 1 AC3 4 LEU A 650 LYS A 660 GLU A 695 TYR A 698 SITE 1 AC4 4 PHE A 587 GLN A 589 VAL A 591 ALA A 620 SITE 1 AC5 6 MET A 542 ALA A 543 LYS A 570 THR A 852 SITE 2 AC5 6 THR A 855 TYR A 857 SITE 1 AC6 1 A B 13 SITE 1 AC7 3 U D 4 HOH D 202 HOH D 204 CRYST1 55.663 117.041 70.104 90.00 92.40 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017965 0.000000 0.000754 0.00000 SCALE2 0.000000 0.008544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014277 0.00000