HEADER HORMONE 03-APR-15 4Z67 TITLE THE 1.5-ANGSTROM CRYSTAL STRUCTURE OF MN(2+)-BOUND PQQB FROM TITLE 2 PSEUDOMONAS PUTIDA COMPND MOL_ID: 1; COMPND 2 MOLECULE: COENZYME PQQ SYNTHESIS PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PYRROLOQUINOLINE QUINONE BIOSYNTHESIS PROTEIN B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA (STRAIN KT2440); SOURCE 3 ORGANISM_TAXID: 160488; SOURCE 4 STRAIN: KT2440; SOURCE 5 GENE: PQQB, PP_0379; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PQQB, PQQ, METALLO-BETA-LACTAMASE, BETA-LACTAMASE, PYRROLOQUINOLINE KEYWDS 2 QUINONE, HORMONE EXPDTA X-RAY DIFFRACTION AUTHOR X.TU,C.M.WILMOT REVDAT 2 06-MAR-24 4Z67 1 REMARK LINK REVDAT 1 13-APR-16 4Z67 0 JRNL AUTH X.TU,C.M.WILMOT JRNL TITL CRYSTAL STRUCTURES REVEAL METAL-BINDING PLASTICITY AT THE JRNL TITL 2 ACTIVE SITE OF PQQB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 65552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3575 - 4.3116 1.00 2840 142 0.1611 0.1867 REMARK 3 2 4.3116 - 3.4240 1.00 2700 134 0.1446 0.1598 REMARK 3 3 3.4240 - 2.9916 1.00 2623 152 0.1524 0.1648 REMARK 3 4 2.9916 - 2.7183 1.00 2633 149 0.1457 0.1815 REMARK 3 5 2.7183 - 2.5236 1.00 2647 128 0.1399 0.1667 REMARK 3 6 2.5236 - 2.3749 1.00 2617 124 0.1314 0.1866 REMARK 3 7 2.3749 - 2.2560 1.00 2590 143 0.1194 0.1554 REMARK 3 8 2.2560 - 2.1578 1.00 2584 163 0.1093 0.1581 REMARK 3 9 2.1578 - 2.0748 1.00 2583 140 0.1107 0.1511 REMARK 3 10 2.0748 - 2.0032 1.00 2587 145 0.1077 0.1352 REMARK 3 11 2.0032 - 1.9406 1.00 2591 145 0.1017 0.1414 REMARK 3 12 1.9406 - 1.8851 1.00 2563 142 0.1077 0.1549 REMARK 3 13 1.8851 - 1.8355 1.00 2570 145 0.1026 0.1565 REMARK 3 14 1.8355 - 1.7907 1.00 2595 119 0.1095 0.1542 REMARK 3 15 1.7907 - 1.7500 1.00 2587 117 0.1106 0.1395 REMARK 3 16 1.7500 - 1.7128 1.00 2577 137 0.1184 0.1591 REMARK 3 17 1.7128 - 1.6785 1.00 2587 123 0.1247 0.1584 REMARK 3 18 1.6785 - 1.6468 1.00 2557 133 0.1315 0.1802 REMARK 3 19 1.6468 - 1.6174 1.00 2578 151 0.1343 0.2076 REMARK 3 20 1.6174 - 1.5900 1.00 2544 128 0.1931 0.2575 REMARK 3 21 1.5900 - 1.5644 1.00 2556 148 0.2621 0.2879 REMARK 3 22 1.5644 - 1.5403 1.00 2562 124 0.3321 0.3789 REMARK 3 23 1.5403 - 1.5176 1.00 2527 145 0.3640 0.4165 REMARK 3 24 1.5176 - 1.4963 0.95 2429 148 0.3702 0.3637 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 2576 REMARK 3 ANGLE : 1.602 3518 REMARK 3 CHIRALITY : 0.102 375 REMARK 3 PLANARITY : 0.008 478 REMARK 3 DIHEDRAL : 13.796 958 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208582. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65627 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.91400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11% PEG4000, 0.2M NACL, 1 MM MNCL2, 1 REMARK 280 MM MALIC ACID, 0.1M BIS-TRIS PROPANE PH6.7, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.53200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 43.16350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 43.16350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 80.29800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 43.16350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 43.16350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.76600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 43.16350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.16350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 80.29800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 43.16350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.16350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.76600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.53200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -60.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.53200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 645 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 814 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 745 O HOH A 810 3444 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 40 109.94 -17.69 REMARK 500 ASP A 47 -7.05 -141.36 REMARK 500 ASN A 55 135.26 75.83 REMARK 500 ASN A 55 135.26 74.23 REMARK 500 THR A 120 -85.35 -135.25 REMARK 500 ASN A 132 49.28 39.96 REMARK 500 ASP A 220 118.86 -36.14 REMARK 500 HIS A 269 62.40 63.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 815 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A 816 DISTANCE = 6.28 ANGSTROMS REMARK 525 HOH A 817 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 818 DISTANCE = 7.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 11 O REMARK 620 2 ASN A 271 OD1 103.0 REMARK 620 3 MLT A 402 O5 97.1 136.0 REMARK 620 4 HOH A 517 O 80.0 107.3 114.5 REMARK 620 5 HOH A 578 O 153.2 79.8 65.7 125.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 19 SG REMARK 620 2 CYS A 21 SG 108.5 REMARK 620 3 CYS A 24 SG 115.5 116.6 REMARK 620 4 ASN A 272 OD1 100.8 109.5 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 92 OD2 REMARK 620 2 HIS A 269 NE2 105.7 REMARK 620 3 MLT A 402 O2 161.2 91.3 REMARK 620 4 MLT A 402 O3 90.5 161.3 71.5 REMARK 620 5 MLT A 402 O4 91.5 90.7 80.1 79.3 REMARK 620 6 HOH A 526 O 91.1 100.4 93.8 88.4 167.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z5Y RELATED DB: PDB REMARK 900 RELATED ID: 4Z5Z RELATED DB: PDB REMARK 900 RELATED ID: 4Z60 RELATED DB: PDB REMARK 900 RELATED ID: 4Z6X RELATED DB: PDB DBREF 4Z67 A 1 303 UNP Q88QV5 PQQB_PSEPK 1 303 SEQADV 4Z67 MET A 0 UNP Q88QV5 INITIATING METHIONINE SEQADV 4Z67 THR A 253 UNP Q88QV5 MET 253 CONFLICT SEQADV 4Z67 LEU A 304 UNP Q88QV5 EXPRESSION TAG SEQADV 4Z67 GLU A 305 UNP Q88QV5 EXPRESSION TAG SEQADV 4Z67 HIS A 306 UNP Q88QV5 EXPRESSION TAG SEQADV 4Z67 HIS A 307 UNP Q88QV5 EXPRESSION TAG SEQADV 4Z67 HIS A 308 UNP Q88QV5 EXPRESSION TAG SEQRES 1 A 309 MET MET TYR ILE GLN VAL LEU GLY SER ALA ALA GLY GLY SEQRES 2 A 309 GLY PHE PRO GLN TRP ASN CYS ASN CYS VAL ASN CYS LYS SEQRES 3 A 309 GLY TYR ARG ASP GLY THR LEU LYS ALA THR ALA ARG THR SEQRES 4 A 309 GLN SER SER ILE ALA LEU SER ASP ASP GLY VAL HIS TRP SEQRES 5 A 309 ILE LEU CYS ASN ALA SER PRO ASP ILE ARG ALA GLN LEU SEQRES 6 A 309 GLN ALA PHE ALA PRO MET GLN PRO ALA ARG ALA LEU ARG SEQRES 7 A 309 ASP THR GLY ILE ASN ALA ILE VAL LEU LEU ASP SER GLN SEQRES 8 A 309 ILE ASP HIS THR THR GLY LEU LEU SER LEU ARG GLU GLY SEQRES 9 A 309 CYS PRO HIS GLN VAL TRP CYS THR ASP MET VAL HIS GLN SEQRES 10 A 309 ASP LEU THR THR GLY PHE PRO LEU PHE ASN MET LEU SER SEQRES 11 A 309 HIS TRP ASN GLY GLY LEU GLN TRP ASN ARG ILE GLU LEU SEQRES 12 A 309 GLU GLY SER PHE VAL ILE ASP ALA CYS PRO ASN LEU LYS SEQRES 13 A 309 PHE THR PRO PHE PRO LEU ARG SER ALA ALA PRO PRO TYR SEQRES 14 A 309 SER PRO HIS ARG PHE ASP PRO HIS PRO GLY ASP ASN LEU SEQRES 15 A 309 GLY LEU MET VAL GLU ASP THR ARG THR GLY GLY LYS LEU SEQRES 16 A 309 PHE TYR ALA PRO GLY LEU GLY GLN VAL ASP GLU LYS LEU SEQRES 17 A 309 LEU ALA MET MET HIS GLY ALA ASP CYS LEU LEU VAL ASP SEQRES 18 A 309 GLY THR LEU TRP GLU ASP ASP GLU MET GLN ARG ARG GLY SEQRES 19 A 309 VAL GLY THR ARG THR GLY ARG GLU MET GLY HIS LEU ALA SEQRES 20 A 309 GLN ASN GLY PRO GLY GLY THR LEU GLU VAL LEU ASP GLY SEQRES 21 A 309 PHE PRO ARG GLN ARG LYS VAL LEU ILE HIS ILE ASN ASN SEQRES 22 A 309 THR ASN PRO ILE LEU ASP GLU ASN SER PRO GLU ARG ALA SEQRES 23 A 309 GLU VAL LEU ARG ARG GLY VAL GLU VAL ALA PHE ASP GLY SEQRES 24 A 309 MET SER ILE GLU LEU LEU GLU HIS HIS HIS HET ZN A 401 1 HET MLT A 402 9 HET MN A 403 1 HET NA A 404 1 HETNAM ZN ZINC ION HETNAM MLT D-MALATE HETNAM MN MANGANESE (II) ION HETNAM NA SODIUM ION HETSYN MLT (2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY-SUCCINIC ACID FORMUL 2 ZN ZN 2+ FORMUL 3 MLT C4 H6 O5 FORMUL 4 MN MN 2+ FORMUL 5 NA NA 1+ FORMUL 6 HOH *318(H2 O) HELIX 1 AA1 CYS A 21 ASP A 29 1 9 HELIX 2 AA2 ASP A 59 ALA A 66 1 8 HELIX 3 AA3 PHE A 67 GLN A 71 5 5 HELIX 4 AA4 GLN A 90 THR A 95 1 6 HELIX 5 AA5 GLY A 96 CYS A 104 5 9 HELIX 6 AA6 ASP A 112 LEU A 118 1 7 HELIX 7 AA7 PRO A 123 SER A 129 1 7 HELIX 8 AA8 ASP A 204 GLY A 213 1 10 HELIX 9 AA9 ASP A 227 ARG A 232 1 6 HELIX 10 AB1 THR A 238 GLY A 243 1 6 HELIX 11 AB2 GLY A 252 ASP A 258 1 7 HELIX 12 AB3 ASN A 274 ASP A 278 5 5 HELIX 13 AB4 SER A 281 ARG A 290 1 10 SHEET 1 AA1 7 LEU A 135 ILE A 140 0 SHEET 2 AA1 7 HIS A 106 THR A 111 1 N HIS A 106 O GLN A 136 SHEET 3 AA1 7 ILE A 81 VAL A 85 1 N ILE A 84 O TRP A 109 SHEET 4 AA1 7 TRP A 51 CYS A 54 1 N TRP A 51 O ASN A 82 SHEET 5 AA1 7 SER A 41 SER A 45 -1 N ILE A 42 O CYS A 54 SHEET 6 AA1 7 MET A 1 GLY A 7 -1 N GLN A 4 O ALA A 43 SHEET 7 AA1 7 SER A 300 LEU A 303 -1 O ILE A 301 N ILE A 3 SHEET 1 AA2 7 PHE A 146 VAL A 147 0 SHEET 2 AA2 7 LEU A 154 PRO A 160 -1 O PHE A 156 N PHE A 146 SHEET 3 AA2 7 LEU A 181 ASP A 187 -1 O MET A 184 N THR A 157 SHEET 4 AA2 7 LYS A 193 ALA A 197 -1 O TYR A 196 N LEU A 183 SHEET 5 AA2 7 CYS A 216 ASP A 220 1 O LEU A 218 N PHE A 195 SHEET 6 AA2 7 ARG A 264 ILE A 268 1 O VAL A 266 N LEU A 217 SHEET 7 AA2 7 VAL A 292 VAL A 294 1 O GLU A 293 N LEU A 267 LINK O GLY A 11 NA NA A 404 1555 1555 2.35 LINK SG CYS A 19 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 21 ZN ZN A 401 1555 1555 2.30 LINK SG CYS A 24 ZN ZN A 401 1555 1555 2.30 LINK OD2 ASP A 92 MN MN A 403 1555 1555 2.10 LINK NE2 HIS A 269 MN MN A 403 1555 1555 2.26 LINK OD1 ASN A 271 NA NA A 404 1555 1555 2.37 LINK OD1 ASN A 272 ZN ZN A 401 1555 1555 2.04 LINK O2 MLT A 402 MN MN A 403 1555 1555 2.16 LINK O3 MLT A 402 MN MN A 403 1555 1555 2.31 LINK O4 MLT A 402 MN MN A 403 1555 1555 2.19 LINK O5 MLT A 402 NA NA A 404 1555 1555 2.28 LINK MN MN A 403 O HOH A 526 1555 1555 2.11 LINK NA NA A 404 O HOH A 517 1555 1555 2.31 LINK NA NA A 404 O HOH A 578 1555 1555 2.71 CISPEP 1 PHE A 14 PRO A 15 0 -6.64 CISPEP 2 CYS A 104 PRO A 105 0 5.67 SITE 1 AC1 4 CYS A 19 CYS A 21 CYS A 24 ASN A 272 SITE 1 AC2 10 GLY A 11 GLN A 90 ASP A 92 HIS A 244 SITE 2 AC2 10 HIS A 269 MN A 403 NA A 404 HOH A 526 SITE 3 AC2 10 HOH A 578 HOH A 697 SITE 1 AC3 4 ASP A 92 HIS A 269 MLT A 402 HOH A 526 SITE 1 AC4 5 GLY A 11 ASN A 271 MLT A 402 HOH A 517 SITE 2 AC4 5 HOH A 578 CRYST1 86.327 86.327 107.064 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011584 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011584 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009340 0.00000