HEADER BIOTIN-BINDING PROTEIN 05-APR-15 4Z6J TITLE CRYSTAL STRUCTURE OF APO INTACT HOEFAVIDIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: AVIDIN FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-165; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOEFLEA PHOTOTROPHICA DFL-43; SOURCE 3 ORGANISM_TAXID: 411684; SOURCE 4 GENE: HPDFL43_17171; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIGH AFFINITY SYSTEM, BACTERIAL AVIDINS, BIOTIN-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.LIVNAH,O.AVRAHAM REVDAT 3 10-JAN-24 4Z6J 1 REMARK REVDAT 2 05-AUG-15 4Z6J 1 JRNL REVDAT 1 15-JUL-15 4Z6J 0 JRNL AUTH O.AVRAHAM,A.MEIR,A.FISH,E.A.BAYER,O.LIVNAH JRNL TITL HOEFAVIDIN: A DIMERIC BACTERIAL AVIDIN WITH A C-TERMINAL JRNL TITL 2 BINDING TAIL. JRNL REF J.STRUCT.BIOL. V. 191 139 2015 JRNL REFN ESSN 1095-8657 JRNL PMID 26126731 JRNL DOI 10.1016/J.JSB.2015.06.020 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0123 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 10131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 520 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 721 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : -0.71000 REMARK 3 B33 (A**2) : 2.30000 REMARK 3 B12 (A**2) : -0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.640 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.323 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.261 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.370 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2035 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1751 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2784 ; 1.657 ; 1.908 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4030 ; 1.326 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 260 ; 8.322 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;37.596 ;26.087 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;18.219 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 300 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2430 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 506 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1049 ; 0.966 ; 2.380 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1048 ; 0.967 ; 2.380 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1306 ; 1.647 ; 3.559 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1307 ; 1.646 ; 3.559 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 984 ; 0.782 ; 2.424 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 982 ; 0.779 ; 2.423 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1478 ; 1.345 ; 3.611 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2332 ; 6.973 ;20.107 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2307 ; 6.832 ;19.864 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 17 144 B 17 144 11204 0.14 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): 15.5550 21.9420 16.5730 REMARK 3 T TENSOR REMARK 3 T11: 0.2031 T22: 0.0947 REMARK 3 T33: 0.1356 T12: -0.0305 REMARK 3 T13: -0.0242 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 4.3617 L22: 1.1687 REMARK 3 L33: 3.0667 L12: -1.2244 REMARK 3 L13: -0.0338 L23: -1.0473 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: 0.3413 S13: 0.3574 REMARK 3 S21: 0.0360 S22: -0.1452 S23: -0.3483 REMARK 3 S31: -0.4142 S32: 0.2837 S33: 0.1689 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 144 REMARK 3 ORIGIN FOR THE GROUP (A): -2.3190 26.6910 26.2960 REMARK 3 T TENSOR REMARK 3 T11: 0.4534 T22: 0.0832 REMARK 3 T33: 0.0589 T12: 0.0620 REMARK 3 T13: -0.0768 T23: -0.0393 REMARK 3 L TENSOR REMARK 3 L11: 5.1412 L22: 1.3153 REMARK 3 L33: 1.0686 L12: -1.3457 REMARK 3 L13: -0.4400 L23: 1.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.0159 S12: -0.3247 S13: 0.4844 REMARK 3 S21: 0.1956 S22: 0.0682 S23: -0.1848 REMARK 3 S31: -0.0905 S32: -0.0259 S33: -0.0524 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Z6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208709. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10687 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3EW1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5-1.8 M LI2SO4 AND 0.1 M HEPES (PH REMARK 280 7.5-7.7), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.73333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.36667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 86.73333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.36667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.73333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 43.36667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 86.73333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.36667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 HIS A 5 REMARK 465 ALA A 6 REMARK 465 MET A 7 REMARK 465 SER A 8 REMARK 465 PRO A 9 REMARK 465 ASP A 10 REMARK 465 MET A 11 REMARK 465 PHE B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 ASP B 4 REMARK 465 HIS B 5 REMARK 465 ALA B 6 REMARK 465 MET B 7 REMARK 465 SER B 8 REMARK 465 PRO B 9 REMARK 465 ASP B 10 REMARK 465 MET B 11 REMARK 465 LYS B 12 REMARK 465 ALA B 15 REMARK 465 GLY B 16 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 224 O HOH A 249 2.06 REMARK 500 OH TYR A 68 O HOH A 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 117 OG SER A 117 4665 1.76 REMARK 500 O HOH B 258 O HOH B 258 9555 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 -129.06 69.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 114 PHE A 115 -142.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z27 RELATED DB: PDB REMARK 900 THE SAME PROTEIN (HOEFAVIDIN), WITH DIFFERENT LIGANDS AND A REMARK 900 SLIGHTLY DIFFERENT LENGTH REMARK 900 RELATED ID: 4Z28 RELATED DB: PDB REMARK 900 THE SAME PROTEIN (HOEFAVIDIN), WITH DIFFERENT LIGANDS AND A REMARK 900 SLIGHTLY DIFFERENT LENGTH REMARK 900 RELATED ID: 4Z2O RELATED DB: PDB REMARK 900 THE SAME PROTEIN (HOEFAVIDIN), WITH DIFFERENT LIGANDS AND A REMARK 900 SLIGHTLY DIFFERENT LENGTH REMARK 900 RELATED ID: 4Z2P RELATED DB: PDB REMARK 900 THE SAME PROTEIN (HOEFAVIDIN), WITH DIFFERENT LIGANDS AND A REMARK 900 SLIGHTLY DIFFERENT LENGTH REMARK 900 RELATED ID: 4Z2V RELATED DB: PDB REMARK 900 THE SAME PROTEIN (HOEFAVIDIN), WITH DIFFERENT LIGANDS AND A REMARK 900 SLIGHTLY DIFFERENT LENGTH DBREF 4Z6J A 1 144 UNP A9D857 A9D857_9RHIZ 21 164 DBREF 4Z6J B 1 144 UNP A9D857 A9D857_9RHIZ 21 164 SEQRES 1 A 144 PHE ALA ASP ASP HIS ALA MET SER PRO ASP MET LYS LEU SEQRES 2 A 144 LEU ALA GLY ALA SER ASN TRP VAL ASN GLN SER GLY SER SEQRES 3 A 144 VAL ALA GLN PHE VAL PHE THR PRO SER PRO THR GLN PRO SEQRES 4 A 144 GLN THR TYR GLU VAL SER GLY ASN TYR ILE ASN ASN ALA SEQRES 5 A 144 GLN GLY THR GLY CYS LYS GLY THR PRO TYR PRO LEU SER SEQRES 6 A 144 GLY ALA TYR TYR SER GLY ASN GLN ILE ILE SER PHE SER SEQRES 7 A 144 VAL VAL TRP SER ASN ALA SER ALA ASN CYS GLN SER ALA SEQRES 8 A 144 THR GLY TRP THR GLY TYR PHE ASP PHE SER GLY SER GLN SEQRES 9 A 144 ALA VAL LEU LYS THR ASP TRP ASN LEU ALA PHE TYR SER SEQRES 10 A 144 GLY SER THR PRO ALA ILE GLN GLN GLY GLN ASP ASP PHE SEQRES 11 A 144 MET GLN SER VAL ALA THR VAL SER GLU SER LEU LEU THR SEQRES 12 A 144 GLU SEQRES 1 B 144 PHE ALA ASP ASP HIS ALA MET SER PRO ASP MET LYS LEU SEQRES 2 B 144 LEU ALA GLY ALA SER ASN TRP VAL ASN GLN SER GLY SER SEQRES 3 B 144 VAL ALA GLN PHE VAL PHE THR PRO SER PRO THR GLN PRO SEQRES 4 B 144 GLN THR TYR GLU VAL SER GLY ASN TYR ILE ASN ASN ALA SEQRES 5 B 144 GLN GLY THR GLY CYS LYS GLY THR PRO TYR PRO LEU SER SEQRES 6 B 144 GLY ALA TYR TYR SER GLY ASN GLN ILE ILE SER PHE SER SEQRES 7 B 144 VAL VAL TRP SER ASN ALA SER ALA ASN CYS GLN SER ALA SEQRES 8 B 144 THR GLY TRP THR GLY TYR PHE ASP PHE SER GLY SER GLN SEQRES 9 B 144 ALA VAL LEU LYS THR ASP TRP ASN LEU ALA PHE TYR SER SEQRES 10 B 144 GLY SER THR PRO ALA ILE GLN GLN GLY GLN ASP ASP PHE SEQRES 11 B 144 MET GLN SER VAL ALA THR VAL SER GLU SER LEU LEU THR SEQRES 12 B 144 GLU FORMUL 3 HOH *136(H2 O) SHEET 1 AA1 9 SER A 18 ASN A 22 0 SHEET 2 AA1 9 VAL A 27 PRO A 34 -1 O ALA A 28 N TRP A 20 SHEET 3 AA1 9 THR A 41 ILE A 49 -1 O GLU A 43 N THR A 33 SHEET 4 AA1 9 PRO A 61 TYR A 69 -1 O GLY A 66 N VAL A 44 SHEET 5 AA1 9 ILE A 74 SER A 82 -1 O ILE A 74 N TYR A 69 SHEET 6 AA1 9 ASN A 87 ASP A 99 -1 O TRP A 94 N PHE A 77 SHEET 7 AA1 9 VAL A 106 SER A 117 -1 O LYS A 108 N TYR A 97 SHEET 8 AA1 9 THR A 120 GLN A 132 -1 O PHE A 130 N LEU A 107 SHEET 9 AA1 9 SER A 18 ASN A 22 -1 N VAL A 21 O MET A 131 SHEET 1 AA2 9 SER B 18 ASN B 22 0 SHEET 2 AA2 9 VAL B 27 PRO B 34 -1 O ALA B 28 N TRP B 20 SHEET 3 AA2 9 THR B 41 ILE B 49 -1 O GLU B 43 N THR B 33 SHEET 4 AA2 9 PRO B 61 TYR B 69 -1 O GLY B 66 N VAL B 44 SHEET 5 AA2 9 ILE B 74 SER B 82 -1 O ILE B 74 N TYR B 69 SHEET 6 AA2 9 ASN B 87 ASP B 99 -1 O TRP B 94 N PHE B 77 SHEET 7 AA2 9 VAL B 106 TYR B 116 -1 O LYS B 108 N TYR B 97 SHEET 8 AA2 9 PRO B 121 GLN B 132 -1 O PHE B 130 N LEU B 107 SHEET 9 AA2 9 SER B 18 ASN B 22 -1 N VAL B 21 O MET B 131 SSBOND 1 CYS A 57 CYS A 88 1555 1555 2.09 SSBOND 2 CYS B 57 CYS B 88 1555 1555 2.09 CRYST1 82.010 82.010 130.100 90.00 90.00 120.00 P 62 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012194 0.007040 0.000000 0.00000 SCALE2 0.000000 0.014080 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007686 0.00000