HEADER HYDROLASE/HYDROLASE INHIBITOR 07-APR-15 4Z7M TITLE NOVEL INHIBITORS OF BACTERIAL METHIONINE AMINOPEPTIDASE WITH BROAD- TITLE 2 SPECTRUM BIOCHEMICAL ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHIONINE AMINOPEPTIDASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: METAP, PEPTIDASE M, MAP; COMPND 5 EC: 3.4.11.18; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MAP, Z0178, ECS0170; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET50B(+) KEYWDS ANTIBACTERIAL, METHIONINE AMINOPEPTIDASE, AZEPINONE, STRUCTURE-BASED KEYWDS 2 DESIGN, DRUG DISCOVERY, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.A.ROSE,S.D.LAHIRI,D.C.MCKINNEY,R.ALBERT,M.MORNINGSTAR,A.B.SHAPIRO, AUTHOR 2 S.F.FISHER,P.R.FLEMING REVDAT 2 06-MAR-24 4Z7M 1 REMARK LINK REVDAT 1 13-APR-16 4Z7M 0 JRNL AUTH J.A.ROSE,S.D.LAHIRI,D.C.MCKINNEY,R.ALBERT,M.MORNINGSTAR, JRNL AUTH 2 A.B.SHAPIRO,S.F.FISHER,P.R.FLEMING JRNL TITL NOVEL INHIBITORS OF BACTERIAL METHIONINE AMINOPEPTIDASE WITH JRNL TITL 2 BROAD-SPECTRUM BIOCHEMICAL ACTIVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 69.6 REMARK 3 NUMBER OF REFLECTIONS : 67700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3601 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.43 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 347 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 4.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.7490 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.6090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4052 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 387 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.25000 REMARK 3 B22 (A**2) : -3.26000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.125 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.130 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.493 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4190 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4042 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5662 ; 1.863 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9340 ; 1.046 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 520 ; 6.773 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 174 ;36.883 ;24.253 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 756 ;14.592 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.992 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 648 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4648 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 862 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2086 ; 2.279 ; 2.975 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2085 ; 2.279 ; 2.974 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2604 ; 3.011 ; 4.451 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4Z7M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71302 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.430 REMARK 200 RESOLUTION RANGE LOW (A) : 47.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, 1.1 M AMMONIUM SULFATE, REMARK 280 0.1 M POTASSIUM CHLORIDE, 9% TREHALOSE, PH 5.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.35600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 ILE A 93 O HOH A 558 1.97 REMARK 500 OE2 GLU B 190 O HOH B 401 2.10 REMARK 500 CE MET A 112 O HOH A 558 2.13 REMARK 500 O ASN B 74 O HOH B 402 2.16 REMARK 500 CG1 ILE A 93 O HOH A 558 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 204 CD GLU A 204 OE1 0.075 REMARK 500 GLU B 204 CD GLU B 204 OE1 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 124 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 124 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 CYS A 245 CA - CB - SG ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG B 15 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 15 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG B 228 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 60 108.22 -54.30 REMARK 500 ASN A 74 -114.34 55.06 REMARK 500 ARG A 189 -39.10 -33.58 REMARK 500 ASN A 192 87.01 -158.71 REMARK 500 GLU A 204 58.70 -151.74 REMARK 500 ASN B 74 -116.67 62.48 REMARK 500 ASN B 192 87.03 -157.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 595 DISTANCE = 6.20 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 108 OD2 REMARK 620 2 HIS A 171 NE2 99.9 REMARK 620 3 GLU A 204 OE1 167.6 87.5 REMARK 620 4 GLU A 235 OE2 80.2 126.6 87.4 REMARK 620 5 HOH A 408 O 97.5 124.9 86.1 107.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 108 OD2 REMARK 620 2 HIS B 171 NE2 102.1 REMARK 620 3 GLU B 204 OE1 172.3 83.1 REMARK 620 4 GLU B 235 OE2 86.4 127.6 85.9 REMARK 620 5 HOH B 403 O 98.3 123.3 83.3 105.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4L9 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4L9 B 302 DBREF 4Z7M A 2 262 UNP P0AE20 MAP1_ECO57 2 262 DBREF 4Z7M B 2 262 UNP P0AE20 MAP1_ECO57 2 262 SEQRES 1 A 261 ALA ILE SER ILE LYS THR PRO GLU ASP ILE GLU LYS MET SEQRES 2 A 261 ARG VAL ALA GLY ARG LEU ALA ALA GLU VAL LEU GLU MET SEQRES 3 A 261 ILE GLU PRO TYR VAL LYS PRO GLY VAL SER THR GLY GLU SEQRES 4 A 261 LEU ASP ARG ILE CYS ASN ASP TYR ILE VAL ASN GLU GLN SEQRES 5 A 261 HIS ALA VAL SER ALA CYS LEU GLY TYR HIS GLY TYR PRO SEQRES 6 A 261 LYS SER VAL CYS ILE SER ILE ASN GLU VAL VAL CYS HIS SEQRES 7 A 261 GLY ILE PRO ASP ASP ALA LYS LEU LEU LYS ASP GLY ASP SEQRES 8 A 261 ILE VAL ASN ILE ASP VAL THR VAL ILE LYS ASP GLY PHE SEQRES 9 A 261 HIS GLY ASP THR SER LYS MET PHE ILE VAL GLY LYS PRO SEQRES 10 A 261 THR ILE MET GLY GLU ARG LEU CYS ARG ILE THR GLN GLU SEQRES 11 A 261 SER LEU TYR LEU ALA LEU ARG MET VAL LYS PRO GLY ILE SEQRES 12 A 261 ASN LEU ARG GLU ILE GLY ALA ALA ILE GLN LYS PHE VAL SEQRES 13 A 261 GLU ALA GLU GLY PHE SER VAL VAL ARG GLU TYR CYS GLY SEQRES 14 A 261 HIS GLY ILE GLY ARG GLY PHE HIS GLU GLU PRO GLN VAL SEQRES 15 A 261 LEU HIS TYR ASP SER ARG GLU THR ASN VAL VAL LEU LYS SEQRES 16 A 261 PRO GLY MET THR PHE THR ILE GLU PRO MET VAL ASN ALA SEQRES 17 A 261 GLY LYS LYS GLU ILE ARG THR MET LYS ASP GLY TRP THR SEQRES 18 A 261 VAL LYS THR LYS ASP ARG SER LEU SER ALA GLN TYR GLU SEQRES 19 A 261 HIS THR ILE VAL VAL THR ASP ASN GLY CYS GLU ILE LEU SEQRES 20 A 261 THR LEU ARG LYS ASP ASP THR ILE PRO ALA ILE ILE SER SEQRES 21 A 261 HIS SEQRES 1 B 261 ALA ILE SER ILE LYS THR PRO GLU ASP ILE GLU LYS MET SEQRES 2 B 261 ARG VAL ALA GLY ARG LEU ALA ALA GLU VAL LEU GLU MET SEQRES 3 B 261 ILE GLU PRO TYR VAL LYS PRO GLY VAL SER THR GLY GLU SEQRES 4 B 261 LEU ASP ARG ILE CYS ASN ASP TYR ILE VAL ASN GLU GLN SEQRES 5 B 261 HIS ALA VAL SER ALA CYS LEU GLY TYR HIS GLY TYR PRO SEQRES 6 B 261 LYS SER VAL CYS ILE SER ILE ASN GLU VAL VAL CYS HIS SEQRES 7 B 261 GLY ILE PRO ASP ASP ALA LYS LEU LEU LYS ASP GLY ASP SEQRES 8 B 261 ILE VAL ASN ILE ASP VAL THR VAL ILE LYS ASP GLY PHE SEQRES 9 B 261 HIS GLY ASP THR SER LYS MET PHE ILE VAL GLY LYS PRO SEQRES 10 B 261 THR ILE MET GLY GLU ARG LEU CYS ARG ILE THR GLN GLU SEQRES 11 B 261 SER LEU TYR LEU ALA LEU ARG MET VAL LYS PRO GLY ILE SEQRES 12 B 261 ASN LEU ARG GLU ILE GLY ALA ALA ILE GLN LYS PHE VAL SEQRES 13 B 261 GLU ALA GLU GLY PHE SER VAL VAL ARG GLU TYR CYS GLY SEQRES 14 B 261 HIS GLY ILE GLY ARG GLY PHE HIS GLU GLU PRO GLN VAL SEQRES 15 B 261 LEU HIS TYR ASP SER ARG GLU THR ASN VAL VAL LEU LYS SEQRES 16 B 261 PRO GLY MET THR PHE THR ILE GLU PRO MET VAL ASN ALA SEQRES 17 B 261 GLY LYS LYS GLU ILE ARG THR MET LYS ASP GLY TRP THR SEQRES 18 B 261 VAL LYS THR LYS ASP ARG SER LEU SER ALA GLN TYR GLU SEQRES 19 B 261 HIS THR ILE VAL VAL THR ASP ASN GLY CYS GLU ILE LEU SEQRES 20 B 261 THR LEU ARG LYS ASP ASP THR ILE PRO ALA ILE ILE SER SEQRES 21 B 261 HIS HET MN A 301 1 HET 4L9 A 302 32 HET MN B 301 1 HET 4L9 B 302 32 HETNAM MN MANGANESE (II) ION HETNAM 4L9 N~2~-[(3,5-DIFLUOROPHENYL)ACETYL]-N-[(3S,7R)-1-METHYL- HETNAM 2 4L9 2-OXO-7-PHENYL-2,3,4,7-TETRAHYDRO-1H-AZEPIN-3-YL]-L- HETNAM 3 4L9 ALANINAMIDE FORMUL 3 MN 2(MN 2+) FORMUL 4 4L9 2(C24 H25 F2 N3 O3) FORMUL 7 HOH *387(H2 O) HELIX 1 AA1 THR A 7 GLU A 29 1 23 HELIX 2 AA2 PRO A 30 VAL A 32 5 3 HELIX 3 AA3 SER A 37 GLU A 52 1 16 HELIX 4 AA4 GLY A 61 TYR A 65 5 5 HELIX 5 AA5 THR A 119 VAL A 140 1 22 HELIX 6 AA6 LEU A 146 GLU A 160 1 15 HELIX 7 AA7 THR B 7 GLU B 29 1 23 HELIX 8 AA8 PRO B 30 VAL B 32 5 3 HELIX 9 AA9 SER B 37 GLU B 52 1 16 HELIX 10 AB1 GLY B 61 TYR B 65 5 5 HELIX 11 AB2 THR B 119 VAL B 140 1 22 HELIX 12 AB3 ASN B 145 GLU B 160 1 16 SHEET 1 AA1 3 VAL A 56 SER A 57 0 SHEET 2 AA1 3 ILE A 93 LYS A 102 -1 O ILE A 101 N VAL A 56 SHEET 3 AA1 3 CYS A 70 ILE A 73 -1 N SER A 72 O ASN A 95 SHEET 1 AA2 3 VAL A 56 SER A 57 0 SHEET 2 AA2 3 ILE A 93 LYS A 102 -1 O ILE A 101 N VAL A 56 SHEET 3 AA2 3 PHE A 105 ILE A 114 -1 O THR A 109 N VAL A 98 SHEET 1 AA3 3 VAL A 76 CYS A 78 0 SHEET 2 AA3 3 VAL A 223 THR A 225 -1 O VAL A 223 N VAL A 77 SHEET 3 AA3 3 ILE A 214 THR A 216 -1 N ARG A 215 O LYS A 224 SHEET 1 AA4 3 SER A 163 VAL A 164 0 SHEET 2 AA4 3 MET A 206 ASN A 208 -1 O ASN A 208 N SER A 163 SHEET 3 AA4 3 SER A 231 GLN A 233 -1 O ALA A 232 N VAL A 207 SHEET 1 AA5 2 GLY A 170 GLY A 172 0 SHEET 2 AA5 2 GLU A 179 VAL A 183 -1 O VAL A 183 N GLY A 170 SHEET 1 AA6 4 THR A 200 ILE A 203 0 SHEET 2 AA6 4 HIS A 236 VAL A 240 -1 O ILE A 238 N PHE A 201 SHEET 3 AA6 4 GLY A 244 ILE A 247 -1 O GLU A 246 N VAL A 239 SHEET 4 AA6 4 ILE A 259 SER A 261 -1 O ILE A 260 N CYS A 245 SHEET 1 AA7 3 VAL B 56 SER B 57 0 SHEET 2 AA7 3 ILE B 93 LYS B 102 -1 O ILE B 101 N VAL B 56 SHEET 3 AA7 3 CYS B 70 ILE B 73 -1 N SER B 72 O ASN B 95 SHEET 1 AA8 3 VAL B 56 SER B 57 0 SHEET 2 AA8 3 ILE B 93 LYS B 102 -1 O ILE B 101 N VAL B 56 SHEET 3 AA8 3 PHE B 105 ILE B 114 -1 O PHE B 113 N VAL B 94 SHEET 1 AA9 3 VAL B 76 CYS B 78 0 SHEET 2 AA9 3 VAL B 223 THR B 225 -1 O VAL B 223 N VAL B 77 SHEET 3 AA9 3 ILE B 214 THR B 216 -1 N ARG B 215 O LYS B 224 SHEET 1 AB1 3 SER B 163 VAL B 164 0 SHEET 2 AB1 3 MET B 206 ASN B 208 -1 O ASN B 208 N SER B 163 SHEET 3 AB1 3 SER B 231 GLN B 233 -1 O ALA B 232 N VAL B 207 SHEET 1 AB2 2 GLY B 170 GLY B 172 0 SHEET 2 AB2 2 GLU B 179 VAL B 183 -1 O VAL B 183 N GLY B 170 SHEET 1 AB3 4 THR B 200 ILE B 203 0 SHEET 2 AB3 4 HIS B 236 VAL B 240 -1 O ILE B 238 N PHE B 201 SHEET 3 AB3 4 GLY B 244 ILE B 247 -1 O GLU B 246 N VAL B 239 SHEET 4 AB3 4 ILE B 259 SER B 261 -1 O ILE B 260 N CYS B 245 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.09 LINK NE2 HIS A 171 MN MN A 301 1555 1555 2.43 LINK OE1 GLU A 204 MN MN A 301 1555 1555 2.08 LINK OE2 GLU A 235 MN MN A 301 1555 1555 2.33 LINK MN MN A 301 O HOH A 408 1555 1555 2.04 LINK OD2 ASP B 108 MN MN B 301 1555 1555 2.11 LINK NE2 HIS B 171 MN MN B 301 1555 1555 2.37 LINK OE1 GLU B 204 MN MN B 301 1555 1555 2.13 LINK OE2 GLU B 235 MN MN B 301 1555 1555 2.29 LINK MN MN B 301 O HOH B 403 1555 1555 1.94 CISPEP 1 GLU A 180 PRO A 181 0 2.32 CISPEP 2 GLU B 180 PRO B 181 0 -3.04 SITE 1 AC1 6 ASP A 108 HIS A 171 GLU A 204 GLU A 235 SITE 2 AC1 6 4L9 A 302 HOH A 408 SITE 1 AC2 14 CYS A 59 TYR A 65 CYS A 70 HIS A 79 SITE 2 AC2 14 ASP A 97 GLU A 167 TYR A 168 CYS A 169 SITE 3 AC2 14 HIS A 171 HIS A 178 GLU A 204 TRP A 221 SITE 4 AC2 14 MN A 301 HOH A 408 SITE 1 AC3 6 ASP B 108 HIS B 171 GLU B 204 GLU B 235 SITE 2 AC3 6 4L9 B 302 HOH B 403 SITE 1 AC4 16 CYS B 59 TYR B 62 TYR B 65 CYS B 70 SITE 2 AC4 16 HIS B 79 ASP B 97 GLU B 167 TYR B 168 SITE 3 AC4 16 CYS B 169 HIS B 171 HIS B 178 GLU B 204 SITE 4 AC4 16 TRP B 221 MN B 301 HOH B 403 HOH B 451 CRYST1 61.985 62.712 72.978 90.00 89.59 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016133 0.000000 -0.000114 0.00000 SCALE2 0.000000 0.015946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013703 0.00000