HEADER PROTEIN BINDING 08-APR-15 4Z8G TITLE CHIMERA OF TROPOMODULIN-1 AND LEIOMODIN-1 ACTIN-BINDING SITE 2 (TL1 TITLE 2 ABS2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: TROPOMODULIN-1, LEIOMODIN-1 CHIMERA (TP1 ABS2); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TROPOMODULIN-1 RESIDUES 163-228 (UNP), LEIOMODIN-1 ACTIN- COMPND 5 BINDING SITE 2 (UNP RESIDUES 364-486); COMPND 6 SYNONYM: TL1, ERYTHROCYTE TROPOMODULIN, E-TMOD,64 KDA AUTOANTIGEN 1D, COMPND 7 64 KDA AUTOANTIGEN 1D3, 64 KDA AUTOANTIGEN D1, LEIOMODIN, MUSCLE COMPND 8 FORM, SMOOTH MUSCLE LEIOMODIN, SM-LMOD, THYROID-ASSOCIATED COMPND 9 OPHTHALMOPATHY AUTOANTIGEN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TMOD1, D9S57E, TMOD, LMOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACTIN NUCLEATOR, LEUCINE RICH REPEAT DOMAIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.BOCZKOWSKA,G.REBOWSKI,R.DOMINGUEZ REVDAT 5 27-SEP-23 4Z8G 1 LINK REVDAT 4 25-DEC-19 4Z8G 1 REMARK REVDAT 3 07-MAR-18 4Z8G 1 REMARK REVDAT 2 06-SEP-17 4Z8G 1 REMARK REVDAT 1 21-OCT-15 4Z8G 0 JRNL AUTH M.BOCZKOWSKA,G.REBOWSKI,E.KREMNEVA,P.LAPPALAINEN,R.DOMINGUEZ JRNL TITL HOW LEIOMODIN AND TROPOMODULIN USE A COMMON FOLD FOR JRNL TITL 2 DIFFERENT ACTIN ASSEMBLY FUNCTIONS. JRNL REF NAT COMMUN V. 6 8314 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26370058 JRNL DOI 10.1038/NCOMMS9314 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 12673 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 641 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9175 - 3.5906 1.00 2640 136 0.1711 0.2238 REMARK 3 2 3.5906 - 2.8501 1.00 2512 136 0.1936 0.2529 REMARK 3 3 2.8501 - 2.4899 0.99 2494 131 0.2027 0.2991 REMARK 3 4 2.4899 - 2.2622 0.99 2442 133 0.2121 0.2820 REMARK 3 5 2.2622 - 2.1001 0.79 1944 105 0.2302 0.2877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 1447 REMARK 3 ANGLE : 1.663 1956 REMARK 3 CHIRALITY : 0.081 228 REMARK 3 PLANARITY : 0.014 256 REMARK 3 DIHEDRAL : 18.021 576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.0368 35.3819 0.0231 REMARK 3 T TENSOR REMARK 3 T11: 0.2190 T22: 0.3209 REMARK 3 T33: 0.4225 T12: 0.0592 REMARK 3 T13: 0.3667 T23: -0.1950 REMARK 3 L TENSOR REMARK 3 L11: 1.5085 L22: 1.3043 REMARK 3 L33: 3.3449 L12: -0.5013 REMARK 3 L13: -0.3382 L23: -0.1503 REMARK 3 S TENSOR REMARK 3 S11: -0.9183 S12: 0.6391 S13: 0.2904 REMARK 3 S21: 0.3910 S22: -0.3029 S23: 0.7162 REMARK 3 S31: -0.4441 S32: -0.5331 S33: 0.0661 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.4350 41.2570 -6.1406 REMARK 3 T TENSOR REMARK 3 T11: 0.1775 T22: 0.2212 REMARK 3 T33: 0.2451 T12: 0.0007 REMARK 3 T13: 0.0379 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.4399 L22: 3.2007 REMARK 3 L33: 5.9998 L12: 1.1195 REMARK 3 L13: 2.7717 L23: 3.4273 REMARK 3 S TENSOR REMARK 3 S11: -0.0652 S12: 0.2348 S13: 0.2347 REMARK 3 S21: -0.0765 S22: 0.1591 S23: -0.2074 REMARK 3 S31: -0.5226 S32: 0.3654 S33: 0.0095 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 372 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7584 31.2849 -0.3574 REMARK 3 T TENSOR REMARK 3 T11: 0.3520 T22: 0.2308 REMARK 3 T33: 0.2001 T12: 0.0144 REMARK 3 T13: 0.1031 T23: -0.0432 REMARK 3 L TENSOR REMARK 3 L11: 2.7787 L22: 2.3775 REMARK 3 L33: 2.3832 L12: 0.9585 REMARK 3 L13: -0.2748 L23: 0.0125 REMARK 3 S TENSOR REMARK 3 S11: -0.1350 S12: -0.1505 S13: -0.0743 REMARK 3 S21: 0.7141 S22: -0.0425 S23: 0.1996 REMARK 3 S31: 0.2629 S32: -0.2218 S33: 0.0720 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 373 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0870 27.2725 -2.7933 REMARK 3 T TENSOR REMARK 3 T11: 0.2651 T22: 0.1835 REMARK 3 T33: 0.1747 T12: -0.0292 REMARK 3 T13: 0.0149 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 1.7499 L22: 1.3012 REMARK 3 L33: 1.6379 L12: -0.0213 REMARK 3 L13: 0.4327 L23: -0.2096 REMARK 3 S TENSOR REMARK 3 S11: -0.0941 S12: 0.0621 S13: -0.0151 REMARK 3 S21: 0.5803 S22: -0.0104 S23: -0.0511 REMARK 3 S31: 0.3071 S32: 0.0487 S33: 0.1115 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 430 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1474 24.2242 -7.4852 REMARK 3 T TENSOR REMARK 3 T11: 0.2448 T22: 0.2032 REMARK 3 T33: 0.1914 T12: 0.0303 REMARK 3 T13: 0.0017 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 2.4329 L22: 3.1526 REMARK 3 L33: 1.9066 L12: 0.9427 REMARK 3 L13: -0.3136 L23: -0.7811 REMARK 3 S TENSOR REMARK 3 S11: -0.0769 S12: -0.0817 S13: 0.0244 REMARK 3 S21: 0.4798 S22: 0.0670 S23: -0.2583 REMARK 3 S31: 0.1303 S32: 0.1462 S33: 0.0025 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 431 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0083 18.2452 -12.0926 REMARK 3 T TENSOR REMARK 3 T11: 0.2078 T22: 0.2590 REMARK 3 T33: 0.2466 T12: 0.0916 REMARK 3 T13: -0.0385 T23: -0.0567 REMARK 3 L TENSOR REMARK 3 L11: 2.7044 L22: 2.4881 REMARK 3 L33: 2.0521 L12: 0.5023 REMARK 3 L13: -0.3637 L23: -0.7120 REMARK 3 S TENSOR REMARK 3 S11: 0.1096 S12: -0.0453 S13: -0.1543 REMARK 3 S21: 0.4027 S22: -0.0085 S23: -0.3604 REMARK 3 S31: 0.3956 S32: 0.4447 S33: 0.0078 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 457 THROUGH 486 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8341 6.7792 -14.5229 REMARK 3 T TENSOR REMARK 3 T11: 0.2842 T22: 0.2009 REMARK 3 T33: 0.1883 T12: -0.0174 REMARK 3 T13: 0.0300 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 4.6476 L22: 3.8712 REMARK 3 L33: 2.1809 L12: 2.3222 REMARK 3 L13: -0.5199 L23: -0.7825 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: -0.0223 S13: -0.1375 REMARK 3 S21: 0.3045 S22: 0.0358 S23: 0.1900 REMARK 3 S31: 0.4342 S32: -0.3228 S33: -0.0967 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z8G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208732. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : QUAZARTM MONTEL MULTILAYER REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12725 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 43.908 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.20 REMARK 200 R MERGE FOR SHELL (I) : 0.30000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4PKI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% MPD, 0.1 M MES/NAOH, PH 6.0, 200 REMARK 280 MM LITHIUM SULFATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.73400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.80200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.96800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.80200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.73400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.96800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 161 REMARK 465 ALA A 162 REMARK 465 SER A 163 REMARK 465 VAL A 164 REMARK 465 ILE A 165 REMARK 465 LYS A 166 REMARK 465 PRO A 167 REMARK 465 THR A 168 REMARK 465 GLN A 169 REMARK 465 TYR A 170 REMARK 465 LYS A 171 REMARK 465 PRO A 172 REMARK 465 VAL A 173 REMARK 465 PRO A 174 REMARK 465 ASP A 175 REMARK 465 GLU A 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 468 O HOH A 607 1.55 REMARK 500 HH22 ARG A 370 O HOH A 603 1.55 REMARK 500 O THR A 445 O HOH A 601 1.89 REMARK 500 OG1 THR A 388 O HOH A 602 1.94 REMARK 500 O HOH A 667 O HOH A 692 1.96 REMARK 500 O HOH A 657 O HOH A 706 2.06 REMARK 500 O HOH A 700 O HOH A 706 2.14 REMARK 500 O HOH A 656 O HOH A 680 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 366 CB - CG - CD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LEU A 366 12.22 REMARK 500 ASN A 415 12.14 REMARK 500 ARG A 421 10.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 712 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A 713 DISTANCE = 5.89 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 504 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 OD2 REMARK 620 2 HIS A 374 NE2 19.6 REMARK 620 3 HOH A 608 O 19.3 1.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 502 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 185 OE1 REMARK 620 2 GLU A 188 OE1 98.5 REMARK 620 3 HIS A 398 ND1 57.9 63.1 REMARK 620 4 HIS A 427 NE2 61.8 60.1 4.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 503 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 372 OD2 REMARK 620 2 HIS A 374 ND1 128.1 REMARK 620 3 HOH A 697 O 110.1 106.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 501 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 423 ND1 REMARK 620 2 HIS A 453 ND1 109.9 REMARK 620 3 ASP A 472 OD1 57.2 58.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 509 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z94 RELATED DB: PDB DBREF 4Z8G A 163 228 UNP P28289 TMOD1_HUMAN 163 228 DBREF 4Z8G A 229 486 UNP P29536 LMOD1_HUMAN 364 486 SEQADV 4Z8G MET A 161 UNP P28289 EXPRESSION TAG SEQADV 4Z8G ALA A 162 UNP P28289 EXPRESSION TAG SEQRES 1 A 191 MET ALA SER VAL ILE LYS PRO THR GLN TYR LYS PRO VAL SEQRES 2 A 191 PRO ASP GLU GLU PRO ASN SER THR ASP VAL GLU GLU THR SEQRES 3 A 191 LEU GLU ARG ILE LYS ASN ASN ASP PRO LYS LEU GLU GLU SEQRES 4 A 191 VAL ASN LEU ASN ASN ILE ARG ASN ILE PRO ILE PRO THR SEQRES 5 A 191 LEU LYS ALA TYR ALA GLU ALA LEU LYS GLU ASN SER TYR SEQRES 6 A 191 VAL LYS LYS PHE ALA LEU ALA ASN THR ARG ALA ASP ASP SEQRES 7 A 191 HIS VAL ALA PHE ALA ILE ALA ILE MET LEU LYS ALA ASN SEQRES 8 A 191 LYS THR ILE THR SER LEU ASN LEU ASP SER ASN HIS ILE SEQRES 9 A 191 THR GLY LYS GLY ILE LEU ALA ILE PHE ARG ALA LEU LEU SEQRES 10 A 191 GLN ASN ASN THR LEU THR GLU LEU ARG PHE HIS ASN GLN SEQRES 11 A 191 ARG HIS ILE CYS GLY GLY LYS THR GLU MET GLU ILE ALA SEQRES 12 A 191 LYS LEU LEU LYS GLU ASN THR THR LEU LEU LYS LEU GLY SEQRES 13 A 191 TYR HIS PHE GLU LEU ALA GLY PRO ARG MET THR VAL THR SEQRES 14 A 191 ASN LEU LEU SER ARG ASN MET ASP LYS GLN ARG GLN LYS SEQRES 15 A 191 ARG LEU GLN GLU GLN ARG GLN ALA GLN HET NI A 501 1 HET NI A 502 1 HET NI A 503 1 HET NI A 504 1 HET NI A 505 1 HET NI A 506 1 HET NI A 507 1 HET NI A 508 1 HET NI A 509 1 HETNAM NI NICKEL (II) ION FORMUL 2 NI 9(NI 2+) FORMUL 11 HOH *113(H2 O) HELIX 1 AA1 ASN A 179 ASN A 192 1 14 HELIX 2 AA2 PRO A 209 LYS A 221 1 13 HELIX 3 AA3 ASP A 372 ASN A 386 1 15 HELIX 4 AA4 THR A 400 LEU A 412 1 13 HELIX 5 AA5 GLY A 430 GLU A 443 1 14 HELIX 6 AA6 LEU A 456 ALA A 485 1 30 SHEET 1 AA1 5 GLU A 199 ASN A 201 0 SHEET 2 AA1 5 LYS A 228 ALA A 365 1 O LYS A 228 N VAL A 200 SHEET 3 AA1 5 SER A 391 ASN A 393 1 O SER A 391 N PHE A 229 SHEET 4 AA1 5 GLU A 419 ARG A 421 1 O GLU A 419 N LEU A 392 SHEET 5 AA1 5 LYS A 449 GLY A 451 1 O GLY A 451 N LEU A 420 LINK OD2 ASP A 182 NI NI A 504 1555 4465 2.00 LINK OE1 GLU A 185 NI NI A 502 1555 4465 2.04 LINK OE1 GLU A 188 NI NI A 502 1555 4465 2.03 LINK OD2 ASP A 372 NI NI A 503 1555 1555 2.55 LINK ND1 HIS A 374 NI NI A 503 1555 1555 1.79 LINK NE2 HIS A 374 NI NI A 504 1555 1555 2.45 LINK ND1 HIS A 398 NI NI A 502 1555 1555 2.01 LINK ND1 HIS A 423 NI NI A 501 1555 1555 1.99 LINK NE2 HIS A 427 NI NI A 502 1555 1555 1.94 LINK ND1 HIS A 453 NI NI A 501 1555 1555 2.04 LINK OD1 ASP A 472 NI NI A 501 1555 3544 2.05 LINK NI NI A 503 O HOH A 697 1555 1555 2.54 LINK NI NI A 504 O HOH A 608 1555 4555 2.30 LINK NI NI A 506 O HOH A 692 1555 1555 2.11 LINK NI NI A 508 O HOH A 681 1555 4565 2.67 SITE 1 AC1 4 HIS A 423 HIS A 453 ASP A 472 NI A 507 SITE 1 AC2 4 GLU A 185 GLU A 188 HIS A 398 HIS A 427 SITE 1 AC3 4 ASP A 182 ASP A 372 HIS A 374 HOH A 697 SITE 1 AC4 5 GLU A 177 ASP A 182 HIS A 374 GLN A 486 SITE 2 AC4 5 HOH A 608 SITE 1 AC5 2 HIS A 398 ARG A 426 SITE 1 AC6 2 GLN A 476 HOH A 692 SITE 1 AC7 6 HIS A 423 ASN A 424 HIS A 453 ASP A 472 SITE 2 AC7 6 ARG A 475 NI A 501 SITE 1 AC8 2 ARG A 370 HOH A 681 SITE 1 AC9 3 ASN A 201 ASN A 203 ASN A 465 CRYST1 53.468 53.936 75.604 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018703 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013227 0.00000