HEADER PROTEIN BINDING/STRUCTURAL PROTEIN 09-APR-15 4Z94 TITLE ACTIN COMPLEX WITH A CHIMERA OF TROPOMODULIN-1 AND LEIOMODIN-1 ACTIN- TITLE 2 BINDING SITE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN, ALPHA SKELETAL MUSCLE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALPHA-ACTIN-1; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: GELSOLIN, TROPOMODULIN-1, LEIOMODIN-1 CHIMERA; COMPND 7 CHAIN: G; COMPND 8 FRAGMENT: GELSOLIN RESIDUES 12-136 (UNP), LINKER,TROPOMODULIN-1 COMPND 9 RESIDUES 160-228 (UNP), LEIOMODIN-1 ACTIN-BINDING SITE 2 (UNP COMPND 10 RESIDUES 364-486); COMPND 11 SYNONYM: AGEL, ACTIN-DEPOLYMERIZING FACTOR, ADF, BREVIN,ERYTHROCYTE COMPND 12 TROPOMODULIN, E-TMOD,64 KDA AUTOANTIGEN 1D, 64 KDA AUTOANTIGEN 1D3, COMPND 13 64 KDA AUTOANTIGEN D1, LEIOMODIN, MUSCLE FORM, SMOOTH MUSCLE COMPND 14 LEIOMODIN, SM-LMOD, THYROID-ASSOCIATED OPHTHALMOPATHY AUTOANTIGEN; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 GENE: GSN, TMOD1, D9S57E, TMOD, LMOD1; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ACTIN NUCLEATOR, ATP-ACTIN, PROTEIN BINDING-STRUCTURAL PROTEIN KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.REBOWSKI,M.BOCZKOWSKA,R.DOMINGUEZ REVDAT 5 27-SEP-23 4Z94 1 LINK REVDAT 4 25-DEC-19 4Z94 1 REMARK REVDAT 3 07-MAR-18 4Z94 1 REMARK REVDAT 2 06-SEP-17 4Z94 1 REMARK REVDAT 1 21-OCT-15 4Z94 0 JRNL AUTH M.BOCZKOWSKA,G.REBOWSKI,E.KREMNEVA,P.LAPPALAINEN,R.DOMINGUEZ JRNL TITL HOW LEIOMODIN AND TROPOMODULIN USE A COMMON FOLD FOR JRNL TITL 2 DIFFERENT ACTIN ASSEMBLY FUNCTIONS. JRNL REF NAT COMMUN V. 6 8314 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 26370058 JRNL DOI 10.1038/NCOMMS9314 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 27843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8174 - 5.1673 1.00 3039 161 0.1647 0.2251 REMARK 3 2 5.1673 - 4.1028 1.00 2981 157 0.1429 0.1734 REMARK 3 3 4.1028 - 3.5845 0.99 2944 154 0.1658 0.2390 REMARK 3 4 3.5845 - 3.2570 0.99 2934 155 0.1951 0.2238 REMARK 3 5 3.2570 - 3.0236 1.00 2947 154 0.2081 0.3103 REMARK 3 6 3.0236 - 2.8454 1.00 2937 155 0.2112 0.2884 REMARK 3 7 2.8454 - 2.7029 0.94 2760 145 0.2255 0.2678 REMARK 3 8 2.7029 - 2.5853 0.82 2432 129 0.2328 0.2987 REMARK 3 9 2.5853 - 2.4858 0.68 1998 105 0.2291 0.3119 REMARK 3 10 2.4858 - 2.4000 0.50 1478 78 0.2457 0.2991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5511 REMARK 3 ANGLE : 1.697 7470 REMARK 3 CHIRALITY : 0.073 830 REMARK 3 PLANARITY : 0.010 964 REMARK 3 DIHEDRAL : 19.466 2069 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2689 3.3327 21.1377 REMARK 3 T TENSOR REMARK 3 T11: 0.0436 T22: 0.0265 REMARK 3 T33: 0.0303 T12: -0.0013 REMARK 3 T13: -0.0113 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.0085 L22: 0.0026 REMARK 3 L33: 0.0225 L12: -0.0291 REMARK 3 L13: -0.0022 L23: -0.0077 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: -0.1274 S13: -0.0679 REMARK 3 S21: 0.0040 S22: 0.0231 S23: 0.0296 REMARK 3 S31: -0.0133 S32: 0.0459 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8355 -6.2211 -0.0187 REMARK 3 T TENSOR REMARK 3 T11: -0.0229 T22: 0.0193 REMARK 3 T33: 0.0729 T12: -0.1213 REMARK 3 T13: -0.0903 T23: -0.0774 REMARK 3 L TENSOR REMARK 3 L11: 0.0067 L22: 0.0117 REMARK 3 L33: 0.0051 L12: 0.0114 REMARK 3 L13: 0.0057 L23: 0.0109 REMARK 3 S TENSOR REMARK 3 S11: 0.0456 S12: 0.1168 S13: 0.0732 REMARK 3 S21: -0.0375 S22: -0.0866 S23: -0.0814 REMARK 3 S31: 0.0216 S32: -0.1130 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 338 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6726 11.6617 16.5542 REMARK 3 T TENSOR REMARK 3 T11: 0.0510 T22: 0.0795 REMARK 3 T33: 0.0996 T12: -0.0865 REMARK 3 T13: -0.0337 T23: -0.0864 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: 0.0007 REMARK 3 L33: -0.0020 L12: -0.0004 REMARK 3 L13: 0.0036 L23: 0.0016 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: -0.0284 S13: 0.0076 REMARK 3 S21: 0.0003 S22: 0.0017 S23: -0.0061 REMARK 3 S31: -0.0217 S32: 0.0310 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1 THROUGH 1176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4941 0.3232 0.5137 REMARK 3 T TENSOR REMARK 3 T11: -0.0483 T22: -0.1453 REMARK 3 T33: 0.1815 T12: 0.1551 REMARK 3 T13: 0.0979 T23: -0.0695 REMARK 3 L TENSOR REMARK 3 L11: 0.0052 L22: 0.0083 REMARK 3 L33: 0.0054 L12: -0.0089 REMARK 3 L13: 0.0050 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.1032 S12: -0.0930 S13: 0.0316 REMARK 3 S21: -0.0657 S22: 0.0368 S23: -0.1096 REMARK 3 S31: 0.0370 S32: -0.0061 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1177 THROUGH 1486 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9543 18.3363 38.0388 REMARK 3 T TENSOR REMARK 3 T11: 0.2944 T22: 0.3718 REMARK 3 T33: -0.0849 T12: 0.1463 REMARK 3 T13: 0.0166 T23: 0.0307 REMARK 3 L TENSOR REMARK 3 L11: 0.0100 L22: 0.0120 REMARK 3 L33: 0.0160 L12: -0.0157 REMARK 3 L13: -0.0140 L23: 0.0086 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: -0.1519 S13: 0.0138 REMARK 3 S21: -0.0054 S22: 0.1199 S23: -0.0136 REMARK 3 S31: -0.1141 S32: -0.0400 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : APEX II CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27914 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 39.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 50.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.920 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 4PKI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 200 MM LITHIUM SULFATE, REMARK 280 100 MM TRIS, PH 8.8, 15% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.39950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -55.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 CYS A 0 REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 GLU A 4 REMARK 465 GLY G 1152 REMARK 465 SER G 1153 REMARK 465 GLY G 1154 REMARK 465 GLY G 1155 REMARK 465 SER G 1156 REMARK 465 GLY G 1157 REMARK 465 GLY G 1158 REMARK 465 SER G 1159 REMARK 465 GLY G 1160 REMARK 465 LEU G 1161 REMARK 465 ASN G 1162 REMARK 465 SER G 1163 REMARK 465 VAL G 1164 REMARK 465 ILE G 1165 REMARK 465 LYS G 1166 REMARK 465 PRO G 1167 REMARK 465 THR G 1168 REMARK 465 GLN G 1169 REMARK 465 TYR G 1170 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H ALA A 220 O HOH A 515 1.53 REMARK 500 HH22 ARG G 91 O HOH G 2105 1.56 REMARK 500 HH TYR G 35 O HOH G 2108 1.56 REMARK 500 O ASP A 363 HH11 ARG G 1475 1.59 REMARK 500 OD1 ASN G 1223 H TYR G 1225 1.59 REMARK 500 O ARG G 1189 O HOH G 2101 1.85 REMARK 500 O ARG G 91 O HOH G 2102 1.93 REMARK 500 O HOH G 2149 O HOH G 2158 1.93 REMARK 500 O HOH G 2137 O HOH G 2159 2.00 REMARK 500 O ASP G 37 O HOH G 2103 2.01 REMARK 500 O TYR A 166 O HOH A 501 2.01 REMARK 500 O HOH A 525 O HOH A 568 2.01 REMARK 500 O HOH A 558 O HOH A 573 2.02 REMARK 500 OD2 ASP A 187 O HOH A 502 2.02 REMARK 500 OD1 ASN A 225 O HOH A 503 2.03 REMARK 500 NZ LYS G 1402 O HOH G 2104 2.04 REMARK 500 OD2 ASP A 157 NH2 ARG A 183 2.06 REMARK 500 O HOH G 2103 O HOH G 2132 2.09 REMARK 500 O SER A 199 O HOH A 504 2.13 REMARK 500 N ASN G 1193 O HOH G 2101 2.14 REMARK 500 NH2 ARG G 91 O HOH G 2105 2.15 REMARK 500 O ASP A 363 NH1 ARG G 1475 2.17 REMARK 500 OG1 THR A 5 O HOH A 505 2.18 REMARK 500 OE1 GLN G 18 O HOH G 2106 2.18 REMARK 500 O HOH A 516 O HOH A 570 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 LEU G1366 CB - CG - CD1 ANGL. DEV. = -10.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 149.83 -173.01 REMARK 500 VAL A 43 -60.11 -128.44 REMARK 500 GLU A 93 -58.86 -123.53 REMARK 500 SER A 199 75.40 44.55 REMARK 500 PRO A 322 178.49 -58.20 REMARK 500 HIS G 5 150.31 166.78 REMARK 500 GLU G1177 75.84 55.31 REMARK 500 ASN G1204 -3.35 76.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 43 MET A 44 -126.63 REMARK 500 VAL G 1173 PRO G 1174 -116.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 296 -10.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 167 OE1 REMARK 620 2 ASP G 85 OD2 74.7 REMARK 620 3 GLY G 90 O 165.9 117.1 REMARK 620 4 ALA G 92 O 86.5 71.6 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 401 O3G REMARK 620 2 ATP A 401 O1B 73.0 REMARK 620 3 HOH A 551 O 139.8 102.9 REMARK 620 4 HOH A 579 O 74.4 91.6 145.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA G2000 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY G 41 O REMARK 620 2 ASP G 42 OD1 82.9 REMARK 620 3 GLU G 73 OE1 81.3 100.4 REMARK 620 4 GLU G 73 OE2 129.8 85.5 53.1 REMARK 620 5 VAL G 121 O 144.4 80.7 132.7 80.2 REMARK 620 6 HOH G2121 O 100.2 170.7 71.7 85.8 101.0 REMARK 620 7 HOH G2122 O 72.2 103.4 141.5 157.7 81.2 85.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA G 2000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4Z8G RELATED DB: PDB DBREF 4Z94 A -1 375 UNP P68135 ACTS_RABIT 1 377 DBREF 4Z94 G 1 125 UNP P06396 GELS_HUMAN 12 136 DBREF 4Z94 G 1160 1228 UNP P28289 TMOD1_HUMAN 160 228 DBREF 4Z94 G 1229 1486 UNP P29536 LMOD1_HUMAN 364 486 SEQADV 4Z94 GLY G 126 UNP P06396 LINKER SEQADV 4Z94 GLY G 1152 UNP P06396 LINKER SEQADV 4Z94 SER G 1153 UNP P06396 LINKER SEQADV 4Z94 GLY G 1154 UNP P06396 LINKER SEQADV 4Z94 GLY G 1155 UNP P06396 LINKER SEQADV 4Z94 SER G 1156 UNP P06396 LINKER SEQADV 4Z94 GLY G 1157 UNP P06396 LINKER SEQADV 4Z94 GLY G 1158 UNP P06396 LINKER SEQADV 4Z94 SER G 1159 UNP P06396 LINKER SEQRES 1 A 377 MET CYS ASP GLU ASP GLU THR THR ALA LEU VAL CYS ASP SEQRES 2 A 377 ASN GLY SER GLY LEU VAL LYS ALA GLY PHE ALA GLY ASP SEQRES 3 A 377 ASP ALA PRO ARG ALA VAL PHE PRO SER ILE VAL GLY ARG SEQRES 4 A 377 PRO ARG HIS GLN GLY VAL MET VAL GLY MET GLY GLN LYS SEQRES 5 A 377 ASP SER TYR VAL GLY ASP GLU ALA GLN SER LYS ARG GLY SEQRES 6 A 377 ILE LEU THR LEU LYS TYR PRO ILE GLU HIC GLY ILE ILE SEQRES 7 A 377 THR ASN TRP ASP ASP MET GLU LYS ILE TRP HIS HIS THR SEQRES 8 A 377 PHE TYR ASN GLU LEU ARG VAL ALA PRO GLU GLU HIS PRO SEQRES 9 A 377 THR LEU LEU THR GLU ALA PRO LEU ASN PRO LYS ALA ASN SEQRES 10 A 377 ARG GLU LYS MET THR GLN ILE MET PHE GLU THR PHE ASN SEQRES 11 A 377 VAL PRO ALA MET TYR VAL ALA ILE GLN ALA VAL LEU SER SEQRES 12 A 377 LEU TYR ALA SER GLY ARG THR THR GLY ILE VAL LEU ASP SEQRES 13 A 377 SER GLY ASP GLY VAL THR HIS ASN VAL PRO ILE TYR GLU SEQRES 14 A 377 GLY TYR ALA LEU PRO HIS ALA ILE MET ARG LEU ASP LEU SEQRES 15 A 377 ALA GLY ARG ASP LEU THR ASP TYR LEU MET LYS ILE LEU SEQRES 16 A 377 THR GLU ARG GLY TYR SER PHE VAL THR THR ALA GLU ARG SEQRES 17 A 377 GLU ILE VAL ARG ASP ILE LYS GLU LYS LEU CYS TYR VAL SEQRES 18 A 377 ALA LEU ASP PHE GLU ASN GLU MET ALA THR ALA ALA SER SEQRES 19 A 377 SER SER SER LEU GLU LYS SER TYR GLU LEU PRO ASP GLY SEQRES 20 A 377 GLN VAL ILE THR ILE GLY ASN GLU ARG PHE ARG CYS PRO SEQRES 21 A 377 GLU THR LEU PHE GLN PRO SER PHE ILE GLY MET GLU SER SEQRES 22 A 377 ALA GLY ILE HIS GLU THR THR TYR ASN SER ILE MET LYS SEQRES 23 A 377 CYS ASP ILE ASP ILE ARG LYS ASP LEU TYR ALA ASN ASN SEQRES 24 A 377 VAL MET SER GLY GLY THR THR MET TYR PRO GLY ILE ALA SEQRES 25 A 377 ASP ARG MET GLN LYS GLU ILE THR ALA LEU ALA PRO SER SEQRES 26 A 377 THR MET LYS ILE LYS ILE ILE ALA PRO PRO GLU ARG LYS SEQRES 27 A 377 TYR SER VAL TRP ILE GLY GLY SER ILE LEU ALA SER LEU SEQRES 28 A 377 SER THR PHE GLN GLN MET TRP ILE THR LYS GLN GLU TYR SEQRES 29 A 377 ASP GLU ALA GLY PRO SER ILE VAL HIS ARG LYS CYS PHE SEQRES 1 G 326 MET VAL VAL GLU HIS PRO GLU PHE LEU LYS ALA GLY LYS SEQRES 2 G 326 GLU PRO GLY LEU GLN ILE TRP ARG VAL GLU LYS PHE ASP SEQRES 3 G 326 LEU VAL PRO VAL PRO THR ASN LEU TYR GLY ASP PHE PHE SEQRES 4 G 326 THR GLY ASP ALA TYR VAL ILE LEU LYS THR VAL GLN LEU SEQRES 5 G 326 ARG ASN GLY ASN LEU GLN TYR ASP LEU HIS TYR TRP LEU SEQRES 6 G 326 GLY ASN GLU CYS SER GLN ASP GLU SER GLY ALA ALA ALA SEQRES 7 G 326 ILE PHE THR VAL GLN LEU ASP ASP TYR LEU ASN GLY ARG SEQRES 8 G 326 ALA VAL GLN HIS ARG GLU VAL GLN GLY PHE GLU SER ALA SEQRES 9 G 326 THR PHE LEU GLY TYR PHE LYS SER GLY LEU LYS TYR LYS SEQRES 10 G 326 LYS GLY GLY VAL ALA SER GLY PHE GLY GLY SER GLY GLY SEQRES 11 G 326 SER GLY GLY SER GLY LEU ASN SER VAL ILE LYS PRO THR SEQRES 12 G 326 GLN TYR LYS PRO VAL PRO ASP GLU GLU PRO ASN SER THR SEQRES 13 G 326 ASP VAL GLU GLU THR LEU GLU ARG ILE LYS ASN ASN ASP SEQRES 14 G 326 PRO LYS LEU GLU GLU VAL ASN LEU ASN ASN ILE ARG ASN SEQRES 15 G 326 ILE PRO ILE PRO THR LEU LYS ALA TYR ALA GLU ALA LEU SEQRES 16 G 326 LYS GLU ASN SER TYR VAL LYS LYS PHE ALA LEU ALA ASN SEQRES 17 G 326 THR ARG ALA ASP ASP HIS VAL ALA PHE ALA ILE ALA ILE SEQRES 18 G 326 MET LEU LYS ALA ASN LYS THR ILE THR SER LEU ASN LEU SEQRES 19 G 326 ASP SER ASN HIS ILE THR GLY LYS GLY ILE LEU ALA ILE SEQRES 20 G 326 PHE ARG ALA LEU LEU GLN ASN ASN THR LEU THR GLU LEU SEQRES 21 G 326 ARG PHE HIS ASN GLN ARG HIS ILE CYS GLY GLY LYS THR SEQRES 22 G 326 GLU MET GLU ILE ALA LYS LEU LEU LYS GLU ASN THR THR SEQRES 23 G 326 LEU LEU LYS LEU GLY TYR HIS PHE GLU LEU ALA GLY PRO SEQRES 24 G 326 ARG MET THR VAL THR ASN LEU LEU SER ARG ASN MET ASP SEQRES 25 G 326 LYS GLN ARG GLN LYS ARG LEU GLN GLU GLN ARG GLN ALA SEQRES 26 G 326 GLN MODRES 4Z94 HIC A 73 HIS MODIFIED RESIDUE HET HIC A 73 19 HET ATP A 401 42 HET CA A 402 1 HET CA A 403 1 HET CA G2000 1 HETNAM HIC 4-METHYL-HISTIDINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION FORMUL 1 HIC C7 H11 N3 O2 FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *182(H2 O) HELIX 1 AA1 GLY A 55 LYS A 61 1 7 HELIX 2 AA2 ASN A 78 GLU A 93 1 16 HELIX 3 AA3 ALA A 97 HIS A 101 5 5 HELIX 4 AA4 PRO A 112 THR A 126 1 15 HELIX 5 AA5 GLN A 137 SER A 145 1 9 HELIX 6 AA6 PRO A 172 ILE A 175 5 4 HELIX 7 AA7 ALA A 181 GLU A 195 1 15 HELIX 8 AA8 THR A 202 CYS A 217 1 16 HELIX 9 AA9 ASP A 222 SER A 233 1 12 HELIX 10 AB1 ASN A 252 CYS A 257 1 6 HELIX 11 AB2 PRO A 258 GLN A 263 1 6 HELIX 12 AB3 PRO A 264 GLY A 268 5 5 HELIX 13 AB4 GLY A 273 LYS A 284 1 12 HELIX 14 AB5 ILE A 289 ASN A 296 1 8 HELIX 15 AB6 GLY A 301 MET A 305 5 5 HELIX 16 AB7 GLY A 308 ALA A 321 1 14 HELIX 17 AB8 TYR A 337 ALA A 347 1 11 HELIX 18 AB9 SER A 348 MET A 355 5 8 HELIX 19 AC1 LYS A 359 GLY A 366 1 8 HELIX 20 AC2 SER A 368 CYS A 374 1 7 HELIX 21 AC3 HIS G 5 ALA G 11 1 7 HELIX 22 AC4 PRO G 31 TYR G 35 5 5 HELIX 23 AC5 SER G 70 LEU G 88 1 19 HELIX 24 AC6 SER G 103 GLY G 108 1 6 HELIX 25 AC7 ASP G 1182 ASN G 1192 1 11 HELIX 26 AC8 PRO G 1209 LYS G 1221 1 13 HELIX 27 AC9 ASP G 1372 ASN G 1386 1 15 HELIX 28 AD1 THR G 1400 LEU G 1411 1 12 HELIX 29 AD2 LEU G 1412 ASN G 1414 5 3 HELIX 30 AD3 GLY G 1430 LEU G 1441 1 12 HELIX 31 AD4 LEU G 1456 ARG G 1483 1 28 SHEET 1 AA1 6 ALA A 29 PRO A 32 0 SHEET 2 AA1 6 LEU A 16 PHE A 21 -1 N ALA A 19 O ALA A 29 SHEET 3 AA1 6 LEU A 8 ASN A 12 -1 N ASP A 11 O LYS A 18 SHEET 4 AA1 6 THR A 103 GLU A 107 1 O LEU A 104 N LEU A 8 SHEET 5 AA1 6 ALA A 131 ILE A 136 1 O TYR A 133 N LEU A 105 SHEET 6 AA1 6 ILE A 357 THR A 358 -1 O ILE A 357 N MET A 132 SHEET 1 AA2 3 TYR A 53 VAL A 54 0 SHEET 2 AA2 3 VAL A 35 PRO A 38 -1 N GLY A 36 O TYR A 53 SHEET 3 AA2 3 LEU A 65 LYS A 68 -1 O THR A 66 N ARG A 37 SHEET 1 AA3 2 ILE A 71 GLU A 72 0 SHEET 2 AA3 2 ILE A 75 ILE A 76 -1 O ILE A 75 N GLU A 72 SHEET 1 AA4 3 TYR A 169 ALA A 170 0 SHEET 2 AA4 3 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 AA4 3 MET A 176 LEU A 178 -1 O LEU A 178 N THR A 160 SHEET 1 AA5 5 TYR A 169 ALA A 170 0 SHEET 2 AA5 5 THR A 160 TYR A 166 -1 N TYR A 166 O TYR A 169 SHEET 3 AA5 5 GLY A 150 SER A 155 -1 N VAL A 152 O VAL A 163 SHEET 4 AA5 5 ASN A 297 SER A 300 1 O SER A 300 N LEU A 153 SHEET 5 AA5 5 ILE A 329 ILE A 330 1 O ILE A 330 N ASN A 297 SHEET 1 AA6 2 LYS A 238 GLU A 241 0 SHEET 2 AA6 2 VAL A 247 ILE A 250 -1 O ILE A 248 N TYR A 240 SHEET 1 AA7 5 ASP G 26 PRO G 29 0 SHEET 2 AA7 5 GLY G 16 GLU G 23 -1 N ARG G 21 O VAL G 28 SHEET 3 AA7 5 ALA G 43 GLN G 51 -1 O LEU G 47 N GLN G 18 SHEET 4 AA7 5 LEU G 57 LEU G 65 -1 O TRP G 64 N TYR G 44 SHEET 5 AA7 5 ALA G 92 VAL G 98 1 O GLU G 97 N TYR G 63 SHEET 1 AA8 2 ASP G 37 PHE G 39 0 SHEET 2 AA8 2 LYS G 115 LYS G 117 1 O LYS G 115 N PHE G 38 SHEET 1 AA9 5 GLU G1199 ASN G1201 0 SHEET 2 AA9 5 LYS G1228 ALA G1365 1 O ALA G1365 N VAL G1200 SHEET 3 AA9 5 SER G1391 ASN G1393 1 O ASN G1393 N PHE G1229 SHEET 4 AA9 5 GLU G1419 ARG G1421 1 O GLU G1419 N LEU G1392 SHEET 5 AA9 5 LYS G1449 GLY G1451 1 O GLY G1451 N LEU G1420 LINK C GLU A 72 N HIC A 73 1555 1555 1.33 LINK C HIC A 73 N GLY A 74 1555 1555 1.33 LINK OE1 GLU A 167 CA CA A 403 1555 1555 2.56 LINK O3G ATP A 401 CA CA A 402 1555 1555 2.42 LINK O1B ATP A 401 CA CA A 402 1555 1555 2.35 LINK CA CA A 402 O HOH A 551 1555 1555 2.41 LINK CA CA A 402 O HOH A 579 1555 1555 2.56 LINK CA CA A 403 OD2 ASP G 85 1555 1555 2.54 LINK CA CA A 403 O GLY G 90 1555 1555 2.40 LINK CA CA A 403 O ALA G 92 1555 1555 2.49 LINK O GLY G 41 CA CA G2000 1555 1555 2.22 LINK OD1 ASP G 42 CA CA G2000 1555 1555 2.39 LINK OE1 GLU G 73 CA CA G2000 1555 1555 2.52 LINK OE2 GLU G 73 CA CA G2000 1555 1555 2.41 LINK O VAL G 121 CA CA G2000 1555 1555 2.35 LINK CA CA G2000 O HOH G2121 1555 1555 2.24 LINK CA CA G2000 O HOH G2122 1555 1555 2.29 CISPEP 1 HIS A 40 GLN A 41 0 18.24 SITE 1 AC1 24 GLY A 13 SER A 14 GLY A 15 LEU A 16 SITE 2 AC1 24 LYS A 18 GLY A 156 ASP A 157 GLY A 158 SITE 3 AC1 24 VAL A 159 GLY A 182 LYS A 213 GLU A 214 SITE 4 AC1 24 GLY A 301 GLY A 302 THR A 303 MET A 305 SITE 5 AC1 24 TYR A 306 LYS A 336 CA A 402 HOH A 513 SITE 6 AC1 24 HOH A 527 HOH A 552 HOH A 574 HOH A 579 SITE 1 AC2 3 ATP A 401 HOH A 551 HOH A 579 SITE 1 AC3 4 GLU A 167 ASP G 85 GLY G 90 ALA G 92 SITE 1 AC4 6 GLY G 41 ASP G 42 GLU G 73 VAL G 121 SITE 2 AC4 6 HOH G2121 HOH G2122 CRYST1 71.234 70.799 81.324 90.00 101.74 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014038 0.000000 0.002916 0.00000 SCALE2 0.000000 0.014124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012559 0.00000