HEADER HYDROLASE 10-APR-15 4Z98 TITLE CRYSTAL STRUCTURE OF HEN EGG WHITE LYSOZYME USING SERIAL X-RAY TITLE 2 DIFFRACTION DATA COLLECTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 19-147; COMPND 5 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 6 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 TISSUE: EGG WHITE KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.D.MURRAY,A.Y.LYUBIMOV,C.M.OGATA,M.UERVIROJNANGKOORN,A.T.BRUNGER, AUTHOR 2 J.M.BERGER REVDAT 3 27-SEP-23 4Z98 1 REMARK REVDAT 2 16-MAY-18 4Z98 1 JRNL REMARK REVDAT 1 14-OCT-15 4Z98 0 JRNL AUTH T.D.MURRAY,A.Y.LYUBIMOV,C.M.OGATA,H.VO,M.UERVIROJNANGKOORN, JRNL AUTH 2 A.T.BRUNGER,J.M.BERGER JRNL TITL A HIGH-TRANSPARENCY, MICRO-PATTERNABLE CHIP FOR X-RAY JRNL TITL 2 DIFFRACTION ANALYSIS OF MICROCRYSTALS UNDER NATIVE GROWTH JRNL TITL 3 CONDITIONS. JRNL REF ACTA CRYSTALLOGR. D BIOL. V. 71 1987 2015 JRNL REF 2 CRYSTALLOGR. JRNL REFN ESSN 1399-0047 JRNL PMID 26457423 JRNL DOI 10.1107/S1399004715015011 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.850 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 17552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9860 - 3.6427 0.97 1336 149 0.2010 0.2426 REMARK 3 2 3.6427 - 2.8923 0.99 1277 142 0.1806 0.1909 REMARK 3 3 2.8923 - 2.5269 0.99 1255 139 0.1756 0.2314 REMARK 3 4 2.5269 - 2.2960 0.99 1241 138 0.1659 0.2151 REMARK 3 5 2.2960 - 2.1315 0.99 1233 137 0.1760 0.2246 REMARK 3 6 2.1315 - 2.0059 0.99 1220 136 0.1907 0.2506 REMARK 3 7 2.0059 - 1.9054 0.98 1199 134 0.2094 0.2546 REMARK 3 8 1.9054 - 1.8225 0.98 1233 136 0.2328 0.2774 REMARK 3 9 1.8225 - 1.7524 0.97 1190 132 0.2606 0.3289 REMARK 3 10 1.7524 - 1.6919 0.95 1163 130 0.2864 0.3495 REMARK 3 11 1.6919 - 1.6390 0.95 1176 131 0.3353 0.3645 REMARK 3 12 1.6390 - 1.5922 0.94 1138 127 0.3405 0.3439 REMARK 3 13 1.5922 - 1.5500 0.92 1134 126 0.3480 0.3787 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1147 REMARK 3 ANGLE : 1.078 1560 REMARK 3 CHIRALITY : 0.044 156 REMARK 3 PLANARITY : 0.004 210 REMARK 3 DIHEDRAL : 14.480 443 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3301 95.0262 56.4923 REMARK 3 T TENSOR REMARK 3 T11: 0.2669 T22: 0.2554 REMARK 3 T33: 0.2213 T12: 0.0157 REMARK 3 T13: -0.0604 T23: 0.0565 REMARK 3 L TENSOR REMARK 3 L11: 0.5232 L22: 1.2554 REMARK 3 L33: 1.2288 L12: 0.5634 REMARK 3 L13: -0.0696 L23: 0.8078 REMARK 3 S TENSOR REMARK 3 S11: 0.4957 S12: -0.2023 S13: -0.3329 REMARK 3 S21: 0.2722 S22: -0.4799 S23: -0.0748 REMARK 3 S31: 0.5937 S32: -0.3257 S33: 0.0028 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7873 102.0103 50.3978 REMARK 3 T TENSOR REMARK 3 T11: 0.1375 T22: 0.1564 REMARK 3 T33: 0.1629 T12: -0.0200 REMARK 3 T13: -0.0031 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.5682 L22: 2.9819 REMARK 3 L33: 0.9363 L12: 1.1741 REMARK 3 L13: 0.8620 L23: -0.0093 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0041 S13: -0.1735 REMARK 3 S21: -0.0837 S22: -0.0361 S23: -0.2940 REMARK 3 S31: 0.1800 S32: 0.0465 S33: 0.0014 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2327 99.3089 42.7450 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.3125 REMARK 3 T33: 0.1861 T12: -0.0096 REMARK 3 T13: 0.0066 T23: 0.0468 REMARK 3 L TENSOR REMARK 3 L11: 1.6552 L22: 6.7530 REMARK 3 L33: 1.4669 L12: 3.3393 REMARK 3 L13: 1.2228 L23: 2.5725 REMARK 3 S TENSOR REMARK 3 S11: -0.1217 S12: -0.0430 S13: 0.2146 REMARK 3 S21: -0.2985 S22: 0.0488 S23: 0.6197 REMARK 3 S31: -0.2928 S32: 0.2416 S33: -0.2552 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7804 96.9667 46.0904 REMARK 3 T TENSOR REMARK 3 T11: 0.1902 T22: 0.2404 REMARK 3 T33: 0.1649 T12: -0.0346 REMARK 3 T13: -0.0214 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.1334 L22: 0.1232 REMARK 3 L33: 0.3320 L12: 0.0199 REMARK 3 L13: -0.1015 L23: -0.0565 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.1260 S13: 0.2231 REMARK 3 S21: -0.0473 S22: -0.0884 S23: 0.0801 REMARK 3 S31: -0.4517 S32: 0.1134 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.0636 95.5770 36.8033 REMARK 3 T TENSOR REMARK 3 T11: 0.2631 T22: 0.2618 REMARK 3 T33: 0.2755 T12: -0.0637 REMARK 3 T13: -0.0547 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 1.9343 L22: 1.3260 REMARK 3 L33: 0.9897 L12: 0.0981 REMARK 3 L13: -0.6932 L23: 0.9464 REMARK 3 S TENSOR REMARK 3 S11: -0.4418 S12: 1.1712 S13: 0.6548 REMARK 3 S21: -0.3377 S22: 0.2490 S23: 0.7446 REMARK 3 S31: -0.7162 S32: -0.2739 S33: -0.0929 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0563 93.7263 33.4298 REMARK 3 T TENSOR REMARK 3 T11: 0.2798 T22: 0.3757 REMARK 3 T33: 0.1789 T12: -0.1065 REMARK 3 T13: 0.0143 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 2.1882 L22: 4.2861 REMARK 3 L33: 0.0651 L12: 3.0581 REMARK 3 L13: -0.3424 L23: -0.4796 REMARK 3 S TENSOR REMARK 3 S11: -0.2284 S12: 0.5328 S13: -0.5837 REMARK 3 S21: -0.9373 S22: 0.4997 S23: -0.1964 REMARK 3 S31: 0.4317 S32: -0.4108 S33: -0.0858 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9385 93.0222 44.3112 REMARK 3 T TENSOR REMARK 3 T11: 0.1884 T22: 0.1961 REMARK 3 T33: 0.2265 T12: -0.0274 REMARK 3 T13: 0.0036 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.0839 L22: 1.1625 REMARK 3 L33: 0.6034 L12: 0.0138 REMARK 3 L13: 0.4615 L23: 0.6975 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.1008 S13: -0.3205 REMARK 3 S21: 0.2859 S22: 0.0726 S23: -0.2634 REMARK 3 S31: 0.0786 S32: 0.0681 S33: -0.0005 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2476 109.3119 44.5358 REMARK 3 T TENSOR REMARK 3 T11: 0.1898 T22: 0.2071 REMARK 3 T33: 0.2299 T12: 0.0061 REMARK 3 T13: -0.0074 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 1.5598 L22: 2.2645 REMARK 3 L33: 0.4569 L12: 0.5292 REMARK 3 L13: 0.5632 L23: -0.2203 REMARK 3 S TENSOR REMARK 3 S11: -0.2362 S12: 0.3071 S13: 0.1268 REMARK 3 S21: -0.4000 S22: 0.1251 S23: 0.4751 REMARK 3 S31: -0.0601 S32: -0.3385 S33: -0.0027 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1234 106.8703 59.0364 REMARK 3 T TENSOR REMARK 3 T11: 0.2532 T22: 0.3061 REMARK 3 T33: 0.4034 T12: -0.0467 REMARK 3 T13: -0.1245 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.8949 L22: 0.3258 REMARK 3 L33: 1.4817 L12: -0.5300 REMARK 3 L13: 0.4139 L23: -0.2465 REMARK 3 S TENSOR REMARK 3 S11: -0.0951 S12: 0.0270 S13: 0.2192 REMARK 3 S21: 0.5289 S22: -0.1146 S23: -0.9813 REMARK 3 S31: -0.4609 S32: 0.6907 S33: 0.0446 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z98 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208846. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03318 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCTBX.XFEL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17566 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 39.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.44 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.680 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1VDP REMARK 200 REMARK 200 REMARK: TETRAGONAL MICROCRYSTALS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% W/V NACL, 8% W/V PEG 8000, 0.5 M REMARK 280 SODIUM ACETATE, PH 3.5, SMALL TUBES, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 19.05550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.57200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.57200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.58325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.57200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.57200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.52775 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.57200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.57200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.58325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.57200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.57200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.52775 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 19.05550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 334 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 365 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 363 O HOH A 373 2.13 REMARK 500 O HOH A 358 O HOH A 374 2.16 REMARK 500 O THR A 118 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O THR A 43 HH22 ARG A 45 8667 1.59 REMARK 500 O THR A 43 HH12 ARG A 68 8667 1.59 REMARK 500 O HOH A 375 O HOH A 375 8666 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 62 -32.26 -131.35 REMARK 500 ARG A 68 19.39 -140.76 REMARK 500 ARG A 68 25.33 -141.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 201 DBREF 4Z98 A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HET ACT A 201 7 HETNAM ACT ACETATE ION FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 HOH *80(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 SER A 100 1 13 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 6 CYS A 127 1555 1555 2.02 SSBOND 2 CYS A 30 CYS A 115 1555 1555 2.04 SSBOND 3 CYS A 64 CYS A 80 1555 1555 2.03 SSBOND 4 CYS A 76 CYS A 94 1555 1555 2.01 SITE 1 AC1 6 ILE A 58 ASN A 59 TRP A 63 ALA A 107 SITE 2 AC1 6 TRP A 108 HOH A 341 CRYST1 79.144 79.144 38.111 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012635 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012635 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026239 0.00000