HEADER APOPTOSIS 12-APR-15 4Z9V TITLE TCTP CONTAINS A BH3-LIKE DOMAIN, WHICH INSTEAD OF INHIBITING, TITLE 2 ACTIVATES BCL-XL COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL-2-LIKE PROTEIN 1,APOPTOSIS REGULATOR BCL-XL; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BCL2-L-1,APOPTOSIS REGULATOR BCL-X; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRANSLATIONALLY-CONTROLLED TUMOR PROTEIN; COMPND 9 CHAIN: C, D, E, F, G, H; COMPND 10 SYNONYM: TCTP,FORTILIN,HISTAMINE-RELEASING FACTOR,HRF,P23; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES; COMPND 13 OTHER_DETAILS: TRANSLATIONALLY CONTROLLED TUMOR PROTEIN; N TERMINAL COMPND 14 FRAGMENT 11-31 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL2L1, BCL2L, BCLX; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: PRARE2; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: TPT1; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TCTP, APOPTOSE, BH3, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR V.CURA,M.AGEZ,S.THEBAULT,J.CAVARELLI REVDAT 2 10-JAN-24 4Z9V 1 LINK REVDAT 1 10-FEB-16 4Z9V 0 JRNL AUTH S.THEBAULT,M.AGEZ,X.CHI,J.STOJKO,V.CURA,S.B.TELERMAN, JRNL AUTH 2 L.MAILLET,F.GAUTIER,I.BILLAS-MASSOBRIO,C.BIRCK, JRNL AUTH 3 N.TROFFER-CHARLIER,T.KARAFIN,J.HONORE,A.SENFF-RIBEIRO, JRNL AUTH 4 S.MONTESSUIT,C.M.JOHNSON,P.JUIN,S.CIANFERANI,J.C.MARTINOU, JRNL AUTH 5 D.W.ANDREWS,R.AMSON,A.TELERMAN,J.CAVARELLI JRNL TITL TCTP CONTAINS A BH3-LIKE DOMAIN, WHICH INSTEAD OF JRNL TITL 2 INHIBITING, ACTIVATES BCL-XL. JRNL REF SCI REP V. 6 19725 2016 JRNL REFN ESSN 2045-2322 JRNL PMID 26813996 JRNL DOI 10.1038/SREP19725 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1702 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.120 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 31874 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2995 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5462 - 5.7869 1.00 2717 142 0.1582 0.2009 REMARK 3 2 5.7869 - 4.5946 1.00 2706 140 0.1496 0.1702 REMARK 3 3 4.5946 - 4.0141 1.00 2718 139 0.1355 0.1726 REMARK 3 4 4.0141 - 3.6473 1.00 2724 147 0.1465 0.1774 REMARK 3 5 3.6473 - 3.3859 1.00 2693 144 0.1749 0.1895 REMARK 3 6 3.3859 - 3.1864 1.00 2727 140 0.2054 0.3032 REMARK 3 7 3.1864 - 3.0268 1.00 2703 139 0.2106 0.2260 REMARK 3 8 3.0268 - 2.8951 1.00 2710 147 0.2218 0.2751 REMARK 3 9 2.8951 - 2.7836 1.00 2701 143 0.2163 0.2298 REMARK 3 10 2.7836 - 2.6876 1.00 2719 149 0.2258 0.2687 REMARK 3 11 2.6876 - 2.6036 1.00 2711 141 0.2421 0.2708 REMARK 3 12 2.6036 - 2.5292 1.00 2696 146 0.2435 0.2662 REMARK 3 13 2.5292 - 2.4626 1.00 2719 140 0.2437 0.2714 REMARK 3 14 2.4626 - 2.4025 1.00 2724 142 0.2453 0.3145 REMARK 3 15 2.4025 - 2.3479 1.00 2704 144 0.2611 0.3320 REMARK 3 16 2.3479 - 2.2979 1.00 2705 148 0.2672 0.2745 REMARK 3 17 2.2979 - 2.2520 1.00 2719 144 0.2832 0.3870 REMARK 3 18 2.2520 - 2.2095 1.00 2701 138 0.3048 0.3429 REMARK 3 19 2.2095 - 2.1700 1.00 2701 143 0.3192 0.3608 REMARK 3 20 2.1700 - 2.1332 1.00 2696 144 0.3387 0.3489 REMARK 3 21 2.1332 - 2.0988 0.94 2532 135 0.3587 0.3948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3448 REMARK 3 ANGLE : 0.769 4640 REMARK 3 CHIRALITY : 0.028 492 REMARK 3 PLANARITY : 0.003 601 REMARK 3 DIHEDRAL : 14.428 1251 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1567 32.0411 32.5739 REMARK 3 T TENSOR REMARK 3 T11: 0.3968 T22: 0.3756 REMARK 3 T33: 0.4132 T12: 0.0395 REMARK 3 T13: 0.0526 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 5.8914 L22: 4.1381 REMARK 3 L33: 7.1996 L12: 0.5820 REMARK 3 L13: 2.3486 L23: -3.6684 REMARK 3 S TENSOR REMARK 3 S11: -0.0038 S12: -0.1500 S13: 0.3628 REMARK 3 S21: -0.0693 S22: 0.1371 S23: -0.0333 REMARK 3 S31: -0.0093 S32: 0.0357 S33: -0.1275 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1035 14.0672 21.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.7090 T22: 0.3627 REMARK 3 T33: 0.4754 T12: 0.0763 REMARK 3 T13: 0.1052 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 5.5239 L22: 9.1166 REMARK 3 L33: 6.7873 L12: 3.2219 REMARK 3 L13: 2.5377 L23: 3.5886 REMARK 3 S TENSOR REMARK 3 S11: -0.4786 S12: 0.5010 S13: -0.3164 REMARK 3 S21: -1.1472 S22: 0.1085 S23: 0.3253 REMARK 3 S31: 0.1323 S32: 0.0750 S33: 0.3732 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0590 8.9842 30.9467 REMARK 3 T TENSOR REMARK 3 T11: 0.5286 T22: 0.4813 REMARK 3 T33: 0.6916 T12: -0.0233 REMARK 3 T13: 0.0312 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 6.0132 L22: 4.2950 REMARK 3 L33: 4.0427 L12: -5.1705 REMARK 3 L13: 1.9946 L23: -2.0320 REMARK 3 S TENSOR REMARK 3 S11: -0.0949 S12: 0.1649 S13: -1.0619 REMARK 3 S21: -0.0733 S22: 0.1425 S23: 0.9545 REMARK 3 S31: 0.5057 S32: -0.6146 S33: -0.1430 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2810 13.8062 30.1870 REMARK 3 T TENSOR REMARK 3 T11: 0.4768 T22: 0.3296 REMARK 3 T33: 0.4342 T12: 0.0098 REMARK 3 T13: 0.0484 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 6.8935 L22: 3.9799 REMARK 3 L33: 2.2042 L12: -1.0621 REMARK 3 L13: -0.1372 L23: -0.5576 REMARK 3 S TENSOR REMARK 3 S11: -0.0569 S12: 0.1324 S13: -0.2400 REMARK 3 S21: -0.0649 S22: -0.0486 S23: -0.2914 REMARK 3 S31: 0.3179 S32: 0.0940 S33: 0.0548 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2433 27.8190 24.2560 REMARK 3 T TENSOR REMARK 3 T11: 0.4739 T22: 0.3756 REMARK 3 T33: 0.4494 T12: 0.1128 REMARK 3 T13: 0.0492 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 5.0150 L22: 3.0103 REMARK 3 L33: 3.7226 L12: 2.8118 REMARK 3 L13: -3.3491 L23: -1.5175 REMARK 3 S TENSOR REMARK 3 S11: -0.3202 S12: -0.1958 S13: -0.0196 REMARK 3 S21: -0.3090 S22: -0.0048 S23: -0.2535 REMARK 3 S31: 0.2617 S32: 0.4178 S33: 0.2849 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.3638 39.6753 24.5266 REMARK 3 T TENSOR REMARK 3 T11: 0.4041 T22: 0.4294 REMARK 3 T33: 0.5887 T12: -0.0196 REMARK 3 T13: 0.1055 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 3.0342 L22: 2.7185 REMARK 3 L33: 7.1919 L12: -0.0488 REMARK 3 L13: 1.4656 L23: -1.0963 REMARK 3 S TENSOR REMARK 3 S11: -0.0518 S12: 0.2855 S13: 0.5260 REMARK 3 S21: -0.0406 S22: 0.0581 S23: -0.2831 REMARK 3 S31: -0.4451 S32: 0.5613 S33: 0.0231 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 15 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4612 2.7796 23.0516 REMARK 3 T TENSOR REMARK 3 T11: 0.8235 T22: 0.4174 REMARK 3 T33: 0.6555 T12: 0.0510 REMARK 3 T13: 0.0391 T23: -0.0649 REMARK 3 L TENSOR REMARK 3 L11: 1.6839 L22: 6.6900 REMARK 3 L33: 5.6795 L12: 3.2509 REMARK 3 L13: 0.6165 L23: -0.2794 REMARK 3 S TENSOR REMARK 3 S11: -0.6184 S12: 0.4360 S13: -1.2405 REMARK 3 S21: -0.7996 S22: 0.3383 S23: -0.0408 REMARK 3 S31: -0.1612 S32: -0.0946 S33: 0.0407 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 14 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9334 39.7215 14.5875 REMARK 3 T TENSOR REMARK 3 T11: 0.5396 T22: 0.8239 REMARK 3 T33: 0.6525 T12: -0.0023 REMARK 3 T13: 0.1670 T23: 0.0632 REMARK 3 L TENSOR REMARK 3 L11: 4.2268 L22: 9.3998 REMARK 3 L33: 9.9262 L12: 3.9160 REMARK 3 L13: 5.6319 L23: 3.2727 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: 1.0660 S13: 0.9834 REMARK 3 S21: 0.2569 S22: 0.3788 S23: -0.3950 REMARK 3 S31: -0.0967 S32: 1.3561 S33: -0.1373 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 11 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.4780 35.8800 22.7314 REMARK 3 T TENSOR REMARK 3 T11: 0.7775 T22: 0.8451 REMARK 3 T33: 1.0661 T12: 0.1400 REMARK 3 T13: -0.0255 T23: 0.1066 REMARK 3 L TENSOR REMARK 3 L11: 6.8274 L22: 7.0334 REMARK 3 L33: 6.6006 L12: -6.6538 REMARK 3 L13: -6.3784 L23: 6.7980 REMARK 3 S TENSOR REMARK 3 S11: 0.5041 S12: 0.5933 S13: 0.2130 REMARK 3 S21: -1.1610 S22: -0.4823 S23: 0.7582 REMARK 3 S31: -1.3816 S32: -1.0618 S33: -0.4629 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 20 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3730 32.5800 35.1115 REMARK 3 T TENSOR REMARK 3 T11: 0.6331 T22: 0.5999 REMARK 3 T33: 0.7778 T12: 0.0232 REMARK 3 T13: 0.1541 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 3.8090 L22: 3.6660 REMARK 3 L33: 6.6236 L12: -3.5912 REMARK 3 L13: 1.2492 L23: -0.3379 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -1.2013 S13: 0.5011 REMARK 3 S21: 1.0560 S22: 0.2476 S23: 1.1254 REMARK 3 S31: -0.1072 S32: -1.1070 S33: -0.2379 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5005 23.6057 44.7218 REMARK 3 T TENSOR REMARK 3 T11: 0.6973 T22: 0.8351 REMARK 3 T33: 0.6471 T12: 0.0801 REMARK 3 T13: -0.0040 T23: 0.0415 REMARK 3 L TENSOR REMARK 3 L11: 9.7854 L22: 9.1098 REMARK 3 L33: 3.8548 L12: 0.2570 REMARK 3 L13: 2.0854 L23: 5.6143 REMARK 3 S TENSOR REMARK 3 S11: 0.4769 S12: 0.0575 S13: -0.0943 REMARK 3 S21: -0.0191 S22: -0.2071 S23: -0.9791 REMARK 3 S31: 1.5514 S32: -0.1345 S33: -0.2888 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 20 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.9049 33.7622 46.3433 REMARK 3 T TENSOR REMARK 3 T11: 0.5295 T22: 0.6864 REMARK 3 T33: 0.6738 T12: 0.0094 REMARK 3 T13: -0.0049 T23: -0.0798 REMARK 3 L TENSOR REMARK 3 L11: 7.3339 L22: 2.1768 REMARK 3 L33: 2.5091 L12: 0.4484 REMARK 3 L13: 3.3096 L23: -1.2333 REMARK 3 S TENSOR REMARK 3 S11: 0.1517 S12: -0.4531 S13: 0.3048 REMARK 3 S21: 0.0388 S22: -0.8103 S23: 0.1615 REMARK 3 S31: -0.8181 S32: -0.2186 S33: 0.4137 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 11 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6871 41.1895 32.3450 REMARK 3 T TENSOR REMARK 3 T11: 0.5667 T22: 0.5368 REMARK 3 T33: 1.0198 T12: 0.0431 REMARK 3 T13: 0.0736 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 5.9683 L22: 7.8720 REMARK 3 L33: 4.8875 L12: 6.7291 REMARK 3 L13: -5.1707 L23: -6.1546 REMARK 3 S TENSOR REMARK 3 S11: 0.9115 S12: -0.0487 S13: 2.5723 REMARK 3 S21: 0.5281 S22: -0.1758 S23: 1.6604 REMARK 3 S31: -1.1836 S32: 0.2281 S33: -0.8269 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 24 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9148 31.2033 34.6694 REMARK 3 T TENSOR REMARK 3 T11: 0.7260 T22: 0.7012 REMARK 3 T33: 0.6632 T12: 0.1603 REMARK 3 T13: 0.0644 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.1750 L22: 2.1686 REMARK 3 L33: 7.6014 L12: -0.8767 REMARK 3 L13: -2.0193 L23: -0.9827 REMARK 3 S TENSOR REMARK 3 S11: -0.3582 S12: -1.1775 S13: 0.5937 REMARK 3 S21: 0.4938 S22: 0.2821 S23: 0.2073 REMARK 3 S31: -1.4888 S32: -0.3633 S33: -0.0095 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 11 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7335 24.4713 46.0106 REMARK 3 T TENSOR REMARK 3 T11: 0.6378 T22: 0.9542 REMARK 3 T33: 0.6243 T12: -0.0398 REMARK 3 T13: 0.0689 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 8.8713 L22: 2.2965 REMARK 3 L33: 9.3672 L12: 3.0076 REMARK 3 L13: 4.4801 L23: 2.4704 REMARK 3 S TENSOR REMARK 3 S11: 0.2773 S12: -1.7459 S13: -0.1406 REMARK 3 S21: 0.3679 S22: -0.4489 S23: 0.5948 REMARK 3 S31: 1.2633 S32: -0.7332 S33: 0.1986 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 24 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9445 32.6397 40.3264 REMARK 3 T TENSOR REMARK 3 T11: 0.7049 T22: 0.6498 REMARK 3 T33: 0.6343 T12: 0.0490 REMARK 3 T13: -0.0711 T23: -0.0656 REMARK 3 L TENSOR REMARK 3 L11: 9.5215 L22: 7.6342 REMARK 3 L33: 8.5551 L12: -2.6472 REMARK 3 L13: 1.7860 L23: -3.6491 REMARK 3 S TENSOR REMARK 3 S11: -0.7612 S12: -1.1149 S13: 0.5449 REMARK 3 S21: 1.2017 S22: 0.7155 S23: -0.5012 REMARK 3 S31: -0.5440 S32: -0.4312 S33: 0.0847 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4Z9V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31973 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.099 REMARK 200 RESOLUTION RANGE LOW (A) : 46.535 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2P1L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M TRIS-SODIUM CITRATE, 100MM PIPES REMARK 280 PH, PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.52250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 50.17850 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.17850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.26125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.17850 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 50.17850 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.78375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.17850 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.17850 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.26125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 50.17850 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.17850 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.78375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 52.52250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -143.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 0 REMARK 465 GLU B 208 REMARK 465 ASP C 11 REMARK 465 GLU C 12 REMARK 465 MET C 13 REMARK 465 PHE C 14 REMARK 465 GLU C 30 REMARK 465 VAL C 31 REMARK 465 ASP D 11 REMARK 465 GLU D 12 REMARK 465 MET D 13 REMARK 465 GLU D 30 REMARK 465 VAL D 31 REMARK 465 VAL F 31 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 118 O HOH A 401 2.03 REMARK 500 OXT VAL G 31 O HOH G 101 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 24 -66.02 -136.71 REMARK 500 PHE A 105 -150.64 -133.87 REMARK 500 TRP B 24 -67.98 -139.65 REMARK 500 PHE B 105 -148.33 -131.47 REMARK 500 HIS B 113 117.54 -161.80 REMARK 500 MET B 159 52.41 -117.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 408 O REMARK 620 2 HOH B 406 O 142.3 REMARK 620 3 HOH G 102 O 92.1 104.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA F 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP F 25 O REMARK 620 2 CYS F 28 O 71.6 REMARK 620 3 GLU F 30 O 138.3 102.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA H 101 DBREF 4Z9V A 1 26 UNP Q07817 B2CL1_HUMAN 1 26 DBREF 4Z9V A 83 208 UNP Q07817 B2CL1_HUMAN 83 208 DBREF 4Z9V B 1 26 UNP Q07817 B2CL1_HUMAN 1 26 DBREF 4Z9V B 83 208 UNP Q07817 B2CL1_HUMAN 83 208 DBREF 4Z9V C 11 31 UNP P13693 TCTP_HUMAN 11 31 DBREF 4Z9V D 11 31 UNP P13693 TCTP_HUMAN 11 31 DBREF 4Z9V E 11 31 UNP P13693 TCTP_HUMAN 11 31 DBREF 4Z9V F 11 31 UNP P13693 TCTP_HUMAN 11 31 DBREF 4Z9V G 11 31 UNP P13693 TCTP_HUMAN 11 31 DBREF 4Z9V H 11 31 UNP P13693 TCTP_HUMAN 11 31 SEQADV 4Z9V HIS A 0 UNP Q07817 EXPRESSION TAG SEQADV 4Z9V HIS B 0 UNP Q07817 EXPRESSION TAG SEQRES 1 A 153 HIS MET SER GLN SER ASN ARG GLU LEU VAL VAL ASP PHE SEQRES 2 A 153 LEU SER TYR LYS LEU SER GLN LYS GLY TYR SER TRP SER SEQRES 3 A 153 GLN MET ALA ALA VAL LYS GLN ALA LEU ARG GLU ALA GLY SEQRES 4 A 153 ASP GLU PHE GLU LEU ARG TYR ARG ARG ALA PHE SER ASP SEQRES 5 A 153 LEU THR SER GLN LEU HIS ILE THR PRO GLY THR ALA TYR SEQRES 6 A 153 GLN SER PHE GLU GLN VAL VAL ASN GLU LEU PHE ARG ASP SEQRES 7 A 153 GLY VAL ASN TRP GLY ARG ILE VAL ALA PHE PHE SER PHE SEQRES 8 A 153 GLY GLY ALA LEU CYS VAL GLU SER VAL ASP LYS GLU MET SEQRES 9 A 153 GLN VAL LEU VAL SER ARG ILE ALA ALA TRP MET ALA THR SEQRES 10 A 153 TYR LEU ASN ASP HIS LEU GLU PRO TRP ILE GLN GLU ASN SEQRES 11 A 153 GLY GLY TRP ASP THR PHE VAL GLU LEU TYR GLY ASN ASN SEQRES 12 A 153 ALA ALA ALA GLU SER ARG LYS GLY GLN GLU SEQRES 1 B 153 HIS MET SER GLN SER ASN ARG GLU LEU VAL VAL ASP PHE SEQRES 2 B 153 LEU SER TYR LYS LEU SER GLN LYS GLY TYR SER TRP SER SEQRES 3 B 153 GLN MET ALA ALA VAL LYS GLN ALA LEU ARG GLU ALA GLY SEQRES 4 B 153 ASP GLU PHE GLU LEU ARG TYR ARG ARG ALA PHE SER ASP SEQRES 5 B 153 LEU THR SER GLN LEU HIS ILE THR PRO GLY THR ALA TYR SEQRES 6 B 153 GLN SER PHE GLU GLN VAL VAL ASN GLU LEU PHE ARG ASP SEQRES 7 B 153 GLY VAL ASN TRP GLY ARG ILE VAL ALA PHE PHE SER PHE SEQRES 8 B 153 GLY GLY ALA LEU CYS VAL GLU SER VAL ASP LYS GLU MET SEQRES 9 B 153 GLN VAL LEU VAL SER ARG ILE ALA ALA TRP MET ALA THR SEQRES 10 B 153 TYR LEU ASN ASP HIS LEU GLU PRO TRP ILE GLN GLU ASN SEQRES 11 B 153 GLY GLY TRP ASP THR PHE VAL GLU LEU TYR GLY ASN ASN SEQRES 12 B 153 ALA ALA ALA GLU SER ARG LYS GLY GLN GLU SEQRES 1 C 21 ASP GLU MET PHE SER ASP ILE TYR LYS ILE ARG GLU ILE SEQRES 2 C 21 ALA ASP GLY LEU CYS LEU GLU VAL SEQRES 1 D 21 ASP GLU MET PHE SER ASP ILE TYR LYS ILE ARG GLU ILE SEQRES 2 D 21 ALA ASP GLY LEU CYS LEU GLU VAL SEQRES 1 E 21 ASP GLU MET PHE SER ASP ILE TYR LYS ILE ARG GLU ILE SEQRES 2 E 21 ALA ASP GLY LEU CYS LEU GLU VAL SEQRES 1 F 21 ASP GLU MET PHE SER ASP ILE TYR LYS ILE ARG GLU ILE SEQRES 2 F 21 ALA ASP GLY LEU CYS LEU GLU VAL SEQRES 1 G 21 ASP GLU MET PHE SER ASP ILE TYR LYS ILE ARG GLU ILE SEQRES 2 G 21 ALA ASP GLY LEU CYS LEU GLU VAL SEQRES 1 H 21 ASP GLU MET PHE SER ASP ILE TYR LYS ILE ARG GLU ILE SEQRES 2 H 21 ALA ASP GLY LEU CYS LEU GLU VAL HET BCT A 301 4 HET BCT B 301 4 HET NA F 101 1 HET NA H 101 1 HETNAM BCT BICARBONATE ION HETNAM NA SODIUM ION FORMUL 9 BCT 2(C H O3 1-) FORMUL 11 NA 2(NA 1+) FORMUL 13 HOH *57(H2 O) HELIX 1 AA1 SER A 2 LYS A 20 1 19 HELIX 2 AA2 GLN A 26 ARG A 103 1 22 HELIX 3 AA3 THR A 118 PHE A 131 1 14 HELIX 4 AA4 ASN A 136 LYS A 157 1 22 HELIX 5 AA5 MET A 159 VAL A 161 5 3 HELIX 6 AA6 LEU A 162 LEU A 178 1 17 HELIX 7 AA7 LEU A 178 ASN A 185 1 8 HELIX 8 AA8 GLY A 186 GLY A 196 1 11 HELIX 9 AA9 ASN A 198 GLY A 206 1 9 HELIX 10 AB1 SER B 2 LYS B 20 1 19 HELIX 11 AB2 GLN B 26 PHE B 105 1 24 HELIX 12 AB3 ASP B 107 GLN B 111 5 5 HELIX 13 AB4 THR B 118 PHE B 131 1 14 HELIX 14 AB5 ASN B 136 LYS B 157 1 22 HELIX 15 AB6 VAL B 161 LEU B 178 1 18 HELIX 16 AB7 LEU B 178 ASN B 185 1 8 HELIX 17 AB8 GLY B 186 GLY B 196 1 11 HELIX 18 AB9 ASN B 198 GLY B 206 1 9 HELIX 19 AC1 ASP C 16 LEU C 27 1 12 HELIX 20 AC2 SER D 15 LEU D 27 1 13 HELIX 21 AC3 LYS E 19 CYS E 28 1 10 HELIX 22 AC4 LYS F 19 CYS F 28 1 10 HELIX 23 AC5 PHE G 14 ALA G 24 1 11 HELIX 24 AC6 PHE H 14 ALA H 24 1 11 SSBOND 1 CYS E 28 CYS G 28 1555 1555 2.03 SSBOND 2 CYS F 28 CYS H 28 1555 1555 2.03 LINK O HOH A 408 NA NA H 101 1555 1555 2.49 LINK O HOH B 406 NA NA H 101 1555 1555 2.40 LINK O ASP F 25 NA NA F 101 1555 1555 3.16 LINK O CYS F 28 NA NA F 101 1555 1555 3.07 LINK O GLU F 30 NA NA F 101 1555 1555 3.16 LINK O HOH G 102 NA NA H 101 1555 1555 2.62 SITE 1 AC1 7 ASP A 11 TYR A 15 ALA A 84 ARG A 91 SITE 2 AC1 7 HOH A 416 ARG B 91 GLU H 30 SITE 1 AC2 6 ARG A 91 ASP B 11 TYR B 15 ALA B 84 SITE 2 AC2 6 ARG B 91 GLU G 30 SITE 1 AC3 3 ASP F 25 CYS F 28 GLU F 30 SITE 1 AC4 4 HOH A 408 HOH B 406 HOH G 102 GLU H 30 CRYST1 100.357 100.357 105.045 90.00 90.00 90.00 P 41 21 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009520 0.00000