HEADER HYDROLASE 14-APR-15 4ZB3 TITLE CRYSTAL STRUCTURE OF THE APO ATNUDT7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUDIX HYDROLASE 7; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATNUDT7,ADP-RIBOSE PYROPHOSPHATASE,NADH PYROPHOSPHATASE, COMPND 5 PROTEIN GROWTH FACTOR GENE 1; COMPND 6 EC: 3.6.1.-,3.6.1.13,3.6.1.22; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: NUDT7, GFG1, NUDX7, AT4G12720, T20K18.70; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSJ2 KEYWDS NUDIX, HYDROLASE, APO, OPEN CONFORMATION EXPDTA X-RAY DIFFRACTION AUTHOR Q.TANG,C.LIU,C.ZHONG,J.DING REVDAT 3 20-MAR-24 4ZB3 1 REMARK REVDAT 2 28-OCT-15 4ZB3 1 JRNL REVDAT 1 09-SEP-15 4ZB3 0 JRNL AUTH Q.TANG,C.LIU,C.ZHONG,J.DING JRNL TITL CRYSTAL STRUCTURES OF ARABIDOPSIS THALIANA NUDIX HYDROLASE JRNL TITL 2 NUDT7 REVEAL A PREVIOUSLY UNOBSERVED CONFORMATION. JRNL REF MOL PLANT V. 8 1557 2015 JRNL REFN ESSN 1752-9867 JRNL PMID 26253775 JRNL DOI 10.1016/J.MOLP.2015.07.010 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 20119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1095 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1243 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.2600 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2090 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 102 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : -0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.205 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.783 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2143 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2905 ; 1.438 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 261 ; 5.917 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;38.382 ;25.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 379 ;16.987 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;29.801 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 321 ; 0.111 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1605 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4ZB3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208904. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21343 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACL, 0.1 M HEPES, 1.6 M REMARK 280 AMMONIUM SULFATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.15667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.57833 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 77.15667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.57833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.15667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 38.57833 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 77.15667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.57833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 58.39400 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -101.14137 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 38.57833 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -27 REMARK 465 GLY A -26 REMARK 465 SER A -25 REMARK 465 HIS A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 PRO A -10 REMARK 465 THR A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 THR A 3 REMARK 465 ARG A 4 REMARK 465 ALA A 5 REMARK 465 GLN A 6 REMARK 465 LYS A 269 REMARK 465 ARG A 270 REMARK 465 LEU A 271 REMARK 465 LYS A 272 REMARK 465 VAL A 273 REMARK 465 SER A 274 REMARK 465 ARG A 275 REMARK 465 ASP A 276 REMARK 465 GLN A 277 REMARK 465 ALA A 278 REMARK 465 SER A 279 REMARK 465 ALA A 280 REMARK 465 SER A 281 REMARK 465 LEU A 282 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 26 -59.70 -133.18 REMARK 500 LYS A 51 -81.97 -116.20 REMARK 500 SER A 125 161.36 178.17 REMARK 500 ASP A 130 76.39 -109.02 REMARK 500 LEU A 179 -12.33 75.15 REMARK 500 ASN A 264 94.54 -69.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 DBREF 4ZB3 A 1 282 UNP Q9SU14 NUDT7_ARATH 1 282 SEQADV 4ZB3 MET A -27 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 GLY A -26 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 SER A -25 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 HIS A -24 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 HIS A -23 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 HIS A -22 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 HIS A -21 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 HIS A -20 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 HIS A -19 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 HIS A -18 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 HIS A -17 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 GLY A -16 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 SER A -15 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 ASP A -14 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 TYR A -13 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 ASP A -12 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 ILE A -11 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 PRO A -10 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 THR A -9 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 THR A -8 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 GLU A -7 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 ASN A -6 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 LEU A -5 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 TYR A -4 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 PHE A -3 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 GLN A -2 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 GLY A -1 UNP Q9SU14 EXPRESSION TAG SEQADV 4ZB3 SER A 0 UNP Q9SU14 EXPRESSION TAG SEQRES 1 A 310 MET GLY SER HIS HIS HIS HIS HIS HIS HIS HIS GLY SER SEQRES 2 A 310 ASP TYR ASP ILE PRO THR THR GLU ASN LEU TYR PHE GLN SEQRES 3 A 310 GLY SER MET GLY THR ARG ALA GLN GLN ILE PRO LEU LEU SEQRES 4 A 310 GLU GLY GLU THR ASP ASN TYR ASP GLY VAL THR VAL THR SEQRES 5 A 310 MET VAL GLU PRO MET ASP SER GLU VAL PHE THR GLU SER SEQRES 6 A 310 LEU ARG ALA SER LEU SER HIS TRP ARG GLU GLU GLY LYS SEQRES 7 A 310 LYS GLY ILE TRP ILE LYS LEU PRO LEU GLY LEU ALA ASN SEQRES 8 A 310 LEU VAL GLU ALA ALA VAL SER GLU GLY PHE ARG TYR HIS SEQRES 9 A 310 HIS ALA GLU PRO GLU TYR LEU MET LEU VAL SER TRP ILE SEQRES 10 A 310 SER GLU THR PRO ASP THR ILE PRO ALA ASN ALA SER HIS SEQRES 11 A 310 VAL VAL GLY ALA GLY ALA LEU VAL ILE ASN LYS ASN THR SEQRES 12 A 310 LYS GLU VAL LEU VAL VAL GLN GLU ARG SER GLY PHE PHE SEQRES 13 A 310 LYS ASP LYS ASN VAL TRP LYS LEU PRO THR GLY VAL ILE SEQRES 14 A 310 ASN GLU GLY GLU ASP ILE TRP THR GLY VAL ALA ARG GLU SEQRES 15 A 310 VAL GLU GLU GLU THR GLY ILE ILE ALA ASP PHE VAL GLU SEQRES 16 A 310 VAL LEU ALA PHE ARG GLN SER HIS LYS ALA ILE LEU LYS SEQRES 17 A 310 LYS LYS THR ASP MET PHE PHE LEU CYS VAL LEU SER PRO SEQRES 18 A 310 ARG SER TYR ASP ILE THR GLU GLN LYS SER GLU ILE LEU SEQRES 19 A 310 GLN ALA LYS TRP MET PRO ILE GLN GLU TYR VAL ASP GLN SEQRES 20 A 310 PRO TRP ASN LYS LYS ASN GLU MET PHE LYS PHE MET ALA SEQRES 21 A 310 ASN ILE CYS GLN LYS LYS CYS GLU GLU GLU TYR LEU GLY SEQRES 22 A 310 PHE ALA ILE VAL PRO THR THR THR SER SER GLY LYS GLU SEQRES 23 A 310 SER PHE ILE TYR CYS ASN ALA ASP HIS ALA LYS ARG LEU SEQRES 24 A 310 LYS VAL SER ARG ASP GLN ALA SER ALA SER LEU HET SO4 A 301 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *102(H2 O) HELIX 1 AA1 ASP A 30 GLU A 48 1 19 HELIX 2 AA2 GLY A 60 ASN A 63 5 4 HELIX 3 AA3 LEU A 64 GLU A 71 1 8 HELIX 4 AA4 ASP A 146 GLY A 160 1 15 HELIX 5 AA5 ILE A 213 GLN A 219 1 7 HELIX 6 AA6 PRO A 220 LYS A 224 5 5 HELIX 7 AA7 ASN A 225 GLU A 240 1 16 SHEET 1 AA1 5 GLU A 14 THR A 15 0 SHEET 2 AA1 5 VAL A 21 THR A 24 -1 O THR A 22 N GLU A 14 SHEET 3 AA1 5 GLY A 52 PRO A 58 1 O TRP A 54 N VAL A 21 SHEET 4 AA1 5 TYR A 82 TRP A 88 -1 O LEU A 83 N LEU A 57 SHEET 5 AA1 5 ARG A 74 GLU A 79 -1 N HIS A 77 O MET A 84 SHEET 1 AA2 4 THR A 138 VAL A 140 0 SHEET 2 AA2 4 HIS A 102 ASN A 112 -1 N ALA A 106 O GLY A 139 SHEET 3 AA2 4 THR A 183 PRO A 193 1 O CYS A 189 N LEU A 109 SHEET 4 AA2 4 ALA A 163 SER A 174 -1 N LEU A 169 O LEU A 188 SHEET 1 AA3 4 THR A 138 VAL A 140 0 SHEET 2 AA3 4 HIS A 102 ASN A 112 -1 N ALA A 106 O GLY A 139 SHEET 3 AA3 4 GLU A 117 GLU A 123 -1 O GLU A 117 N ASN A 112 SHEET 4 AA3 4 LEU A 206 PRO A 212 -1 O MET A 211 N VAL A 118 SHEET 1 AA4 2 ALA A 247 THR A 252 0 SHEET 2 AA4 2 GLU A 258 CYS A 263 -1 O SER A 259 N THR A 251 CISPEP 1 SER A 125 GLY A 126 0 -0.30 CISPEP 2 LYS A 129 ASP A 130 0 -8.27 SITE 1 AC1 6 LYS A 51 TRP A 88 THR A 92 ARG A 172 SITE 2 AC1 6 SER A 174 LYS A 176 CRYST1 116.788 116.788 115.735 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008563 0.004944 0.000000 0.00000 SCALE2 0.000000 0.009887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008640 0.00000