HEADER FLUORESCENT PROTEIN 14-APR-15 4ZBL TITLE PHOTOTOXIC FLUORESCENT PROTEIN MKILLERORANGE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOSESITIZER MKILLERORANGE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYDROZOA; SOURCE 3 ORGANISM_COMMON: HYDROZOANS; SOURCE 4 ORGANISM_TAXID: 6074; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS FLUORESCENT PROTEIN, PHOTOTOXICITY, BETA-BARREL, QWG CHROMOPHORE EXPDTA X-RAY DIFFRACTION AUTHOR V.Z.PLETNEV,N.V.PLETNEVA,S.V.PLETNEV REVDAT 6 10-JAN-24 4ZBL 1 REMARK REVDAT 5 15-NOV-23 4ZBL 1 LINK ATOM REVDAT 4 29-AUG-18 4ZBL 1 JRNL REVDAT 3 29-NOV-17 4ZBL 1 REMARK REVDAT 2 13-JAN-16 4ZBL 1 JRNL REVDAT 1 23-DEC-15 4ZBL 0 JRNL AUTH N.V.PLETNEVA,V.Z.PLETNEV,K.S.SARKISYAN,D.A.GORBACHEV, JRNL AUTH 2 E.S.EGOROV,A.S.MISHIN,K.A.LUKYANOV,Z.DAUTER,S.PLETNEV JRNL TITL CRYSTAL STRUCTURE OF PHOTOTOXIC ORANGE FLUORESCENT PROTEINS JRNL TITL 2 WITH A TRYPTOPHAN-BASED CHROMOPHORE. JRNL REF PLOS ONE V. 10 45740 2015 JRNL REFN ESSN 1932-6203 JRNL PMID 26699366 JRNL DOI 10.1371/JOURNAL.PONE.0145740 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.PLETNEV,N.G.GURSKAYA,N.V.PLETNEVA,K.A.LUKYANOV, REMARK 1 AUTH 2 D.M.CHUDAKOV,V.I.MARTYNOV,V.O.POPOV,M.V.KOVALCHUK, REMARK 1 AUTH 3 A.WLODAWER,Z.DAUTER,V.PLETNEV REMARK 1 TITL STRUCTURAL BASIS FOR PHOTOTOXICITY OF THE GENETICALLY REMARK 1 TITL 2 ENCODED PHOTOSENSITIZER KILLERRED. REMARK 1 REF J. BIOL. CHEM. V. 284 32028 2009 REMARK 1 REFN ESSN 1083-351X REMARK 1 PMID 19737938 REMARK 1 DOI 10.1074/JBC.M109.054973 REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 28368 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.57 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2036 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.2120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 158 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.05000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.075 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.076 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1999 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1779 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2734 ; 2.242 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4122 ; 3.756 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 249 ; 6.591 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 91 ;37.452 ;23.846 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 309 ;13.068 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ; 9.270 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 285 ; 0.171 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2327 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 474 ; 0.031 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ZBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000208986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29879 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.24000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3GB3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.09M CITRIC ACID, PH 3.5, 22.5% PEG REMARK 280 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 15.78333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.56667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ARG A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 4M9 A 65 O HOH A 401 1.75 REMARK 500 NE1 4M9 A 65 O HOH A 401 1.77 REMARK 500 O HOH A 469 O HOH A 517 1.95 REMARK 500 OG SER A 79 OE1 GLU A 190 2.03 REMARK 500 O HOH A 436 O HOH A 537 2.04 REMARK 500 OD2 ASP A 113 O HOH A 402 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 218 CD GLU A 218 OE1 -0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 19 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 39 179.83 75.86 REMARK 500 ASP A 41 88.34 -156.37 REMARK 500 ASP A 114 -108.67 66.83 REMARK 500 ASN A 155 26.77 -148.74 REMARK 500 ASP A 209 -148.56 59.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3GB3 RELATED DB: PDB REMARK 900 PHOTOTOXIC ORANGE EMITTING MKILLERORANGE WITH THE TRP BASED REMARK 900 CHROMOPHORE - GENE ENGINEERED VARIANT OF THE RED EMITTING KILLERRED REMARK 900 AND SUPERNOVA REMARK 900 RELATED ID: 3WCK RELATED DB: PDB DBREF 4ZBL A -13 228 PDB 4ZBL 4ZBL -13 228 SEQRES 1 A 240 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ARG SEQRES 2 A 240 GLY SER GLU VAL GLY PRO ALA LEU PHE GLN SER ASP MET SEQRES 3 A 240 THR PHE LYS ILE PHE ILE ASP GLY GLU VAL ASN GLY GLN SEQRES 4 A 240 LYS PHE THR ILE VAL ALA ASP GLY SER SER LYS PHE PRO SEQRES 5 A 240 HIS GLY ASP PHE ASN VAL HIS ALA VAL CYS GLU THR GLY SEQRES 6 A 240 LYS LEU PRO MET SER TRP LYS PRO ILE CYS HIS LEU ILE SEQRES 7 A 240 4M9 GLU PRO PHE PHE ALA ARG TYR PRO ASP GLY ILE SER SEQRES 8 A 240 HIS PHE ALA GLN GLU CYS PHE PRO GLU GLY LEU SER ILE SEQRES 9 A 240 ASP ARG THR VAL ARG PHE GLU ASN ASP GLY THR MET THR SEQRES 10 A 240 SER HIS HIS THR TYR GLU LEU ASP ASP THR CYS VAL VAL SEQRES 11 A 240 SER ARG ILE THR VAL ASN CYS ASP GLY PHE GLN PRO ASP SEQRES 12 A 240 GLY PRO ILE MET ARG ASP GLN LEU VAL ASP ILE LEU PRO SEQRES 13 A 240 SER GLU THR HIS MET PHE PRO HIS GLY PRO ASN ALA VAL SEQRES 14 A 240 ARG GLN THR ALA THR ILE GLY PHE THR THR ALA ASP GLY SEQRES 15 A 240 GLY LYS MET MET GLY HIS PHE ASP SER LYS MET THR PHE SEQRES 16 A 240 ASN GLY SER ARG ALA ILE GLU ILE PRO GLY PRO HIS PHE SEQRES 17 A 240 VAL THR ILE ILE THR LYS GLN THR ARG ASP THR SER ASP SEQRES 18 A 240 LYS ARG ASP HIS VAL CYS GLN ARG GLU VAL ALA TYR ALA SEQRES 19 A 240 HIS SER VAL PRO ARG ILE HET 4M9 A 65 52 HET CIT A 301 13 HET GOL A 302 6 HET GOL A 303 6 HETNAM 4M9 (4Z)-4-IMINO-4-[(4Z)-4-(1H-INDOL-3-YLMETHYLIDENE)-5- HETNAM 2 4M9 OXO-1-(2-OXOETHYL)-4,5-DIHYDRO-1H-IMIDAZOL-2- HETNAM 3 4M9 YL]BUTANAMIDE HETNAM CIT CITRIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 4M9 C18 H17 N5 O3 FORMUL 2 CIT C6 H8 O7 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 HOH *158(H2 O) HELIX 1 AA1 VAL A 3 GLN A 9 5 7 HELIX 2 AA2 TRP A 57 CYS A 61 5 5 HELIX 3 AA3 GLU A 68 ALA A 72 5 5 HELIX 4 AA4 HIS A 80 CYS A 85 1 6 SHEET 1 AA113 LEU A 139 ILE A 142 0 SHEET 2 AA113 ALA A 156 THR A 167 -1 O THR A 166 N VAL A 140 SHEET 3 AA113 LYS A 172 PHE A 183 -1 O PHE A 177 N ALA A 161 SHEET 4 AA113 LEU A 90 PHE A 98 -1 N SER A 91 O THR A 182 SHEET 5 AA113 THR A 103 ASP A 113 -1 O MET A 104 N VAL A 96 SHEET 6 AA113 CYS A 116 ASP A 126 -1 O CYS A 116 N ASP A 113 SHEET 7 AA113 MET A 12 VAL A 22 1 N PHE A 17 O ILE A 121 SHEET 8 AA113 GLN A 25 SER A 35 -1 O ILE A 29 N ILE A 18 SHEET 9 AA113 ASP A 41 CYS A 48 -1 O VAL A 47 N VAL A 30 SHEET 10 AA113 HIS A 213 HIS A 223 -1 O GLN A 216 N VAL A 44 SHEET 11 AA113 HIS A 195 ARG A 205 -1 N ILE A 200 O VAL A 219 SHEET 12 AA113 SER A 145 HIS A 152 -1 N SER A 145 O ILE A 199 SHEET 13 AA113 ALA A 156 THR A 167 -1 O ARG A 158 N PHE A 150 LINK C ILE A 64 N1 A4M9 A 65 1555 1555 1.34 LINK C ILE A 64 N1 B4M9 A 65 1555 1555 1.35 LINK C3 A4M9 A 65 N GLU A 68 1555 1555 1.33 LINK C3 B4M9 A 65 N GLU A 68 1555 1555 1.34 CISPEP 1 PHE A 37 PRO A 38 0 16.69 CISPEP 2 PHE A 86 PRO A 87 0 12.50 SITE 1 AC1 8 ALA A 31 ASP A 32 HIS A 45 VAL A 47 SITE 2 AC1 8 ILE A 200 ARG A 211 HIS A 213 ARG A 217 SITE 1 AC2 10 PHE A 42 4M9 A 65 GLU A 68 PRO A 69 SITE 2 AC2 10 ALA A 72 ILE A 199 GLU A 218 ALA A 220 SITE 3 AC2 10 HOH A 489 HOH A 517 SITE 1 AC3 3 SER A 34 ASN A 43 HIS A 45 CRYST1 64.160 64.160 47.350 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015586 0.008999 0.000000 0.00000 SCALE2 0.000000 0.017997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021119 0.00000