HEADER RNA 15-APR-15 4ZC7 TITLE PAROMOMYCIN BOUND TO A LEISHMANIAL RIBOSOMAL A-SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA DUPLEX; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS A-SITE, RIBOSOME, PAROMOMYCIN, LEISHMANIA, RNA EXPDTA X-RAY DIFFRACTION AUTHOR M.SHALEV,H.ROZENBERG,C.L.JAFFE,N.ADIR,T.BAASOV REVDAT 5 10-JAN-24 4ZC7 1 HETSYN REVDAT 4 31-JAN-18 4ZC7 1 REMARK REVDAT 3 11-OCT-17 4ZC7 1 REMARK REVDAT 2 07-OCT-15 4ZC7 1 JRNL REVDAT 1 26-AUG-15 4ZC7 0 JRNL AUTH M.SHALEV,H.ROZENBERG,B.SMOLKIN,A.NASEREDDIN,D.KOPELYANSKIY, JRNL AUTH 2 V.BELAKHOV,T.SCHREPFER,J.SCHACHT,C.L.JAFFE,N.ADIR,T.BAASOV JRNL TITL STRUCTURAL BASIS FOR SELECTIVE TARGETING OF LEISHMANIAL JRNL TITL 2 RIBOSOMES: AMINOGLYCOSIDE DERIVATIVES AS PROMISING JRNL TITL 3 THERAPEUTICS. JRNL REF NUCLEIC ACIDS RES. V. 43 8601 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26264664 JRNL DOI 10.1093/NAR/GKV821 REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 5004 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0000 - 5.8129 0.95 1235 141 0.1591 0.2065 REMARK 3 2 5.8129 - 4.6154 0.97 1266 135 0.1820 0.3250 REMARK 3 3 4.6154 - 4.0324 0.98 1267 147 0.1920 0.2943 REMARK 3 4 4.0324 - 3.6639 0.97 1228 141 0.1844 0.2997 REMARK 3 5 3.6639 - 3.4014 0.98 1286 140 0.2082 0.3298 REMARK 3 6 3.4014 - 3.2009 0.97 1255 143 0.1972 0.2465 REMARK 3 7 3.2009 - 3.0406 0.96 1281 144 0.2293 0.2573 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.87 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 97.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2027 REMARK 3 ANGLE : 1.230 3142 REMARK 3 CHIRALITY : 0.058 442 REMARK 3 PLANARITY : 0.007 82 REMARK 3 DIHEDRAL : 13.618 965 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7124 -34.2602 14.6121 REMARK 3 T TENSOR REMARK 3 T11: 1.1614 T22: 0.9476 REMARK 3 T33: 1.0658 T12: 0.1224 REMARK 3 T13: -0.3409 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 3.6182 L22: 5.5268 REMARK 3 L33: 3.8751 L12: 2.2596 REMARK 3 L13: -1.6839 L23: 2.5299 REMARK 3 S TENSOR REMARK 3 S11: 0.5333 S12: -2.0599 S13: 1.7307 REMARK 3 S21: 0.0095 S22: -0.3799 S23: -0.0451 REMARK 3 S31: -0.6819 S32: -1.1290 S33: -0.3561 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 17 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8452 -3.8249 8.6166 REMARK 3 T TENSOR REMARK 3 T11: 0.7089 T22: 0.4734 REMARK 3 T33: 0.9622 T12: 0.0810 REMARK 3 T13: 0.1698 T23: 0.6257 REMARK 3 L TENSOR REMARK 3 L11: 0.7747 L22: 5.6173 REMARK 3 L33: 7.1089 L12: 1.5311 REMARK 3 L13: 2.3263 L23: 5.2556 REMARK 3 S TENSOR REMARK 3 S11: -0.7222 S12: 0.0174 S13: 0.4770 REMARK 3 S21: -0.2282 S22: -1.0055 S23: 1.2566 REMARK 3 S31: -1.6817 S32: -1.1074 S33: -2.9966 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.3336 -4.2896 16.0553 REMARK 3 T TENSOR REMARK 3 T11: 0.6449 T22: 1.0676 REMARK 3 T33: 0.6331 T12: 0.1298 REMARK 3 T13: 0.2265 T23: 0.2131 REMARK 3 L TENSOR REMARK 3 L11: 3.3213 L22: 3.8965 REMARK 3 L33: 5.9009 L12: -2.9588 REMARK 3 L13: -1.0443 L23: 3.5870 REMARK 3 S TENSOR REMARK 3 S11: -0.5818 S12: -0.1227 S13: -0.7891 REMARK 3 S21: 0.1652 S22: 0.5855 S23: 0.2094 REMARK 3 S31: 0.5726 S32: 0.6549 S33: 0.0724 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7594 -21.9721 16.3369 REMARK 3 T TENSOR REMARK 3 T11: 0.8878 T22: 0.6993 REMARK 3 T33: 0.7913 T12: 0.2564 REMARK 3 T13: 0.0615 T23: -0.0568 REMARK 3 L TENSOR REMARK 3 L11: 4.4303 L22: 4.4696 REMARK 3 L33: 7.9806 L12: -1.7413 REMARK 3 L13: 2.9387 L23: -3.0291 REMARK 3 S TENSOR REMARK 3 S11: 0.2517 S12: -0.4171 S13: -0.8902 REMARK 3 S21: -0.1304 S22: 0.2142 S23: -0.3692 REMARK 3 S31: 0.9049 S32: 0.6105 S33: -0.6577 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6515 -39.7216 11.0806 REMARK 3 T TENSOR REMARK 3 T11: 1.1403 T22: 0.6588 REMARK 3 T33: 0.9352 T12: 0.2473 REMARK 3 T13: 0.1565 T23: 0.2150 REMARK 3 L TENSOR REMARK 3 L11: 1.9941 L22: 2.0041 REMARK 3 L33: 5.9678 L12: 0.3351 REMARK 3 L13: 4.7110 L23: 3.4571 REMARK 3 S TENSOR REMARK 3 S11: -0.0147 S12: 1.3057 S13: -0.1501 REMARK 3 S21: -0.0522 S22: 0.8694 S23: 2.9183 REMARK 3 S31: 1.5973 S32: 1.1677 S33: -0.2645 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 3 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0613 -9.0471 36.5781 REMARK 3 T TENSOR REMARK 3 T11: 1.6090 T22: 1.0448 REMARK 3 T33: 1.0453 T12: -0.5240 REMARK 3 T13: 0.0937 T23: -0.0692 REMARK 3 L TENSOR REMARK 3 L11: 4.2831 L22: 3.7620 REMARK 3 L33: 1.7715 L12: 4.1177 REMARK 3 L13: 2.4563 L23: 2.0932 REMARK 3 S TENSOR REMARK 3 S11: 0.9385 S12: -1.2167 S13: 0.0346 REMARK 3 S21: 0.2015 S22: -0.9972 S23: 0.2070 REMARK 3 S31: -0.5333 S32: 0.4306 S33: 0.0073 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 13 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.7729 -32.5747 40.5514 REMARK 3 T TENSOR REMARK 3 T11: 0.6833 T22: 0.4709 REMARK 3 T33: 0.7398 T12: -0.0149 REMARK 3 T13: -0.0718 T23: -0.0700 REMARK 3 L TENSOR REMARK 3 L11: 4.4848 L22: 5.5710 REMARK 3 L33: 5.5987 L12: -0.1567 REMARK 3 L13: -2.7441 L23: -0.9234 REMARK 3 S TENSOR REMARK 3 S11: -0.4039 S12: 0.4871 S13: -0.7641 REMARK 3 S21: -0.4259 S22: 0.0050 S23: 0.6427 REMARK 3 S31: 0.3663 S32: -0.2530 S33: 0.2412 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 26 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0529 -29.5502 38.5118 REMARK 3 T TENSOR REMARK 3 T11: 0.6693 T22: 0.7957 REMARK 3 T33: 0.7993 T12: -0.1236 REMARK 3 T13: -0.0345 T23: 0.2383 REMARK 3 L TENSOR REMARK 3 L11: 1.7183 L22: 3.0097 REMARK 3 L33: 2.4628 L12: 0.6509 REMARK 3 L13: -1.1366 L23: -0.6191 REMARK 3 S TENSOR REMARK 3 S11: -0.1787 S12: 0.8258 S13: 0.0968 REMARK 3 S21: 0.6697 S22: 0.6038 S23: 1.7480 REMARK 3 S31: 1.0522 S32: -0.1122 S33: -0.2383 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 36 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8824 -6.1417 35.6091 REMARK 3 T TENSOR REMARK 3 T11: 0.9571 T22: 0.6433 REMARK 3 T33: 0.8370 T12: -0.2710 REMARK 3 T13: 0.1012 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 4.5223 L22: 5.2439 REMARK 3 L33: 5.8455 L12: 1.7146 REMARK 3 L13: 1.9688 L23: 2.4114 REMARK 3 S TENSOR REMARK 3 S11: -0.3277 S12: -0.1890 S13: -0.2626 REMARK 3 S21: -0.7721 S22: 0.3819 S23: 0.5090 REMARK 3 S31: -0.0584 S32: -0.0844 S33: 0.0436 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5223 -18.3924 16.2553 REMARK 3 T TENSOR REMARK 3 T11: 0.8692 T22: 0.9121 REMARK 3 T33: 1.1306 T12: 0.2299 REMARK 3 T13: -0.1136 T23: 0.0766 REMARK 3 L TENSOR REMARK 3 L11: 4.7805 L22: 4.7573 REMARK 3 L33: 8.3937 L12: 2.9912 REMARK 3 L13: -1.4771 L23: 2.3241 REMARK 3 S TENSOR REMARK 3 S11: 1.1723 S12: 1.0005 S13: -1.2511 REMARK 3 S21: 1.9955 S22: -0.4993 S23: 0.4356 REMARK 3 S31: 1.3497 S32: 2.0344 S33: -0.2679 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZC7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9394 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5004 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.040 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1J7T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE PH 7.0, SPERMINE REMARK 280 TETRAHYDROCHLORIDE, 2-METHYL-2,4-PENTANEDIOL (MPD), MGSO4, KCL., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 U A 1 REMARK 465 U A 2 REMARK 465 U A 24 REMARK 465 U A 25 REMARK 465 G A 26 REMARK 465 C A 27 REMARK 465 G A 28 REMARK 465 U A 29 REMARK 465 C A 30 REMARK 465 G A 31 REMARK 465 U A 32 REMARK 465 U A 33 REMARK 465 C A 34 REMARK 465 C A 35 REMARK 465 G A 36 REMARK 465 G A 37 REMARK 465 A A 38 REMARK 465 A A 39 REMARK 465 A A 40 REMARK 465 A A 41 REMARK 465 G A 42 REMARK 465 U A 43 REMARK 465 C A 44 REMARK 465 G A 45 REMARK 465 C A 46 REMARK 465 U A 47 REMARK 465 U A 48 REMARK 465 G A 49 REMARK 465 C A 50 REMARK 465 G A 51 REMARK 465 U A 52 REMARK 465 C A 53 REMARK 465 G A 54 REMARK 465 U A 55 REMARK 465 U A 56 REMARK 465 C A 57 REMARK 465 C A 58 REMARK 465 G A 59 REMARK 465 G A 60 REMARK 465 A A 61 REMARK 465 A A 62 REMARK 465 A A 63 REMARK 465 A A 64 REMARK 465 G A 65 REMARK 465 U A 66 REMARK 465 C A 67 REMARK 465 G A 68 REMARK 465 C A 69 REMARK 465 U A 70 REMARK 465 U A 71 REMARK 465 G A 72 REMARK 465 C A 73 REMARK 465 G A 74 REMARK 465 U A 75 REMARK 465 C A 76 REMARK 465 G A 77 REMARK 465 U A 78 REMARK 465 U A 79 REMARK 465 C A 80 REMARK 465 C A 81 REMARK 465 G A 82 REMARK 465 G A 83 REMARK 465 A A 84 REMARK 465 A A 85 REMARK 465 A A 86 REMARK 465 A A 87 REMARK 465 G A 88 REMARK 465 U A 89 REMARK 465 C A 90 REMARK 465 G A 91 REMARK 465 C A 92 REMARK 465 U B 24 REMARK 465 U B 25 REMARK 465 A B 41 REMARK 465 U B 47 REMARK 465 U B 48 REMARK 465 G B 49 REMARK 465 C B 50 REMARK 465 G B 51 REMARK 465 U B 52 REMARK 465 C B 53 REMARK 465 G B 54 REMARK 465 U B 55 REMARK 465 U B 56 REMARK 465 C B 57 REMARK 465 C B 58 REMARK 465 G B 59 REMARK 465 G B 60 REMARK 465 A B 61 REMARK 465 A B 62 REMARK 465 A B 63 REMARK 465 A B 64 REMARK 465 G B 65 REMARK 465 U B 66 REMARK 465 C B 67 REMARK 465 G B 68 REMARK 465 C B 69 REMARK 465 U B 70 REMARK 465 U B 71 REMARK 465 G B 72 REMARK 465 C B 73 REMARK 465 G B 74 REMARK 465 U B 75 REMARK 465 C B 76 REMARK 465 G B 77 REMARK 465 U B 78 REMARK 465 U B 79 REMARK 465 C B 80 REMARK 465 C B 81 REMARK 465 G B 82 REMARK 465 G B 83 REMARK 465 A B 84 REMARK 465 A B 85 REMARK 465 A B 86 REMARK 465 A B 87 REMARK 465 G B 88 REMARK 465 U B 89 REMARK 465 C B 90 REMARK 465 G B 91 REMARK 465 C B 92 REMARK 465 U B 93 REMARK 465 U B 94 REMARK 465 G B 95 REMARK 465 C B 96 REMARK 465 G B 97 REMARK 465 U B 98 REMARK 465 C B 99 REMARK 465 G B 100 REMARK 465 U B 101 REMARK 465 U B 102 REMARK 465 C B 103 REMARK 465 C B 104 REMARK 465 G B 105 REMARK 465 G B 106 REMARK 465 A B 107 REMARK 465 A B 108 REMARK 465 A B 109 REMARK 465 A B 110 REMARK 465 G B 111 REMARK 465 U B 112 REMARK 465 C B 113 REMARK 465 G B 114 REMARK 465 C B 115 REMARK 465 U C 1 REMARK 465 U C 2 REMARK 465 U C 24 REMARK 465 U C 25 REMARK 465 G C 26 REMARK 465 C C 27 REMARK 465 G C 28 REMARK 465 U C 29 REMARK 465 C C 30 REMARK 465 G C 31 REMARK 465 U C 32 REMARK 465 U C 33 REMARK 465 C C 34 REMARK 465 C C 35 REMARK 465 G C 36 REMARK 465 G C 37 REMARK 465 A C 38 REMARK 465 A C 39 REMARK 465 A C 40 REMARK 465 A C 41 REMARK 465 G C 42 REMARK 465 U C 43 REMARK 465 C C 44 REMARK 465 G C 45 REMARK 465 C C 46 REMARK 465 U C 47 REMARK 465 U C 48 REMARK 465 G C 49 REMARK 465 C C 50 REMARK 465 G C 51 REMARK 465 U C 52 REMARK 465 C C 53 REMARK 465 G C 54 REMARK 465 U C 55 REMARK 465 U C 56 REMARK 465 C C 57 REMARK 465 C C 58 REMARK 465 G C 59 REMARK 465 G C 60 REMARK 465 A C 61 REMARK 465 A C 62 REMARK 465 A C 63 REMARK 465 A C 64 REMARK 465 G C 65 REMARK 465 U C 66 REMARK 465 C C 67 REMARK 465 G C 68 REMARK 465 C C 69 REMARK 465 U C 70 REMARK 465 U C 71 REMARK 465 G C 72 REMARK 465 C C 73 REMARK 465 G C 74 REMARK 465 U C 75 REMARK 465 C C 76 REMARK 465 G C 77 REMARK 465 U C 78 REMARK 465 U C 79 REMARK 465 C C 80 REMARK 465 C C 81 REMARK 465 G C 82 REMARK 465 G C 83 REMARK 465 A C 84 REMARK 465 A C 85 REMARK 465 A C 86 REMARK 465 A C 87 REMARK 465 G C 88 REMARK 465 U C 89 REMARK 465 C C 90 REMARK 465 G C 91 REMARK 465 C C 92 REMARK 465 U D 24 REMARK 465 U D 25 REMARK 465 A D 41 REMARK 465 U D 47 REMARK 465 U D 48 REMARK 465 G D 49 REMARK 465 C D 50 REMARK 465 G D 51 REMARK 465 U D 52 REMARK 465 C D 53 REMARK 465 G D 54 REMARK 465 U D 55 REMARK 465 U D 56 REMARK 465 C D 57 REMARK 465 C D 58 REMARK 465 G D 59 REMARK 465 G D 60 REMARK 465 A D 61 REMARK 465 A D 62 REMARK 465 A D 63 REMARK 465 A D 64 REMARK 465 G D 65 REMARK 465 U D 66 REMARK 465 C D 67 REMARK 465 G D 68 REMARK 465 C D 69 REMARK 465 U D 70 REMARK 465 U D 71 REMARK 465 G D 72 REMARK 465 C D 73 REMARK 465 G D 74 REMARK 465 U D 75 REMARK 465 C D 76 REMARK 465 G D 77 REMARK 465 U D 78 REMARK 465 U D 79 REMARK 465 C D 80 REMARK 465 C D 81 REMARK 465 G D 82 REMARK 465 G D 83 REMARK 465 A D 84 REMARK 465 A D 85 REMARK 465 A D 86 REMARK 465 A D 87 REMARK 465 G D 88 REMARK 465 U D 89 REMARK 465 C D 90 REMARK 465 G D 91 REMARK 465 C D 92 REMARK 465 U D 93 REMARK 465 U D 94 REMARK 465 G D 95 REMARK 465 C D 96 REMARK 465 G D 97 REMARK 465 U D 98 REMARK 465 C D 99 REMARK 465 G D 100 REMARK 465 U D 101 REMARK 465 U D 102 REMARK 465 C D 103 REMARK 465 C D 104 REMARK 465 G D 105 REMARK 465 G D 106 REMARK 465 A D 107 REMARK 465 A D 108 REMARK 465 A D 109 REMARK 465 A D 110 REMARK 465 G D 111 REMARK 465 U D 112 REMARK 465 C D 113 REMARK 465 G D 114 REMARK 465 C D 115 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G D 26 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B 40 N1 - C6 - N6 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PAR A 101 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PAR A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PAR C 101 DBREF 4ZC7 A 1 92 PDB 4ZC7 4ZC7 1 92 DBREF 4ZC7 B 24 115 PDB 4ZC7 4ZC7 24 115 DBREF 4ZC7 C 1 92 PDB 4ZC7 4ZC7 1 92 DBREF 4ZC7 D 24 115 PDB 4ZC7 4ZC7 24 115 SEQRES 1 A 92 U U G C G U C G U U C C G SEQRES 2 A 92 G A A A A G U C G C U U G SEQRES 3 A 92 C G U C G U U C C G G A A SEQRES 4 A 92 A A G U C G C U U G C G U SEQRES 5 A 92 C G U U C C G G A A A A G SEQRES 6 A 92 U C G C U U G C G U C G U SEQRES 7 A 92 U C C G G A A A A G U C G SEQRES 8 A 92 C SEQRES 1 B 92 U U G C G U C G U U C C G SEQRES 2 B 92 G A A A A G U C G C U U G SEQRES 3 B 92 C G U C G U U C C G G A A SEQRES 4 B 92 A A G U C G C U U G C G U SEQRES 5 B 92 C G U U C C G G A A A A G SEQRES 6 B 92 U C G C U U G C G U C G U SEQRES 7 B 92 U C C G G A A A A G U C G SEQRES 8 B 92 C SEQRES 1 C 92 U U G C G U C G U U C C G SEQRES 2 C 92 G A A A A G U C G C U U G SEQRES 3 C 92 C G U C G U U C C G G A A SEQRES 4 C 92 A A G U C G C U U G C G U SEQRES 5 C 92 C G U U C C G G A A A A G SEQRES 6 C 92 U C G C U U G C G U C G U SEQRES 7 C 92 U C C G G A A A A G U C G SEQRES 8 C 92 C SEQRES 1 D 92 U U G C G U C G U U C C G SEQRES 2 D 92 G A A A A G U C G C U U G SEQRES 3 D 92 C G U C G U U C C G G A A SEQRES 4 D 92 A A G U C G C U U G C G U SEQRES 5 D 92 C G U U C C G G A A A A G SEQRES 6 D 92 U C G C U U G C G U C G U SEQRES 7 D 92 U C C G G A A A A G U C G SEQRES 8 D 92 C HET PAR A 101 31 HET PAR C 101 42 HETNAM PAR PAROMOMYCIN HETSYN PAR PAROMOMYCIN I; AMMINOSIDIN; CATENULIN; CRESTOMYCIN; HETSYN 2 PAR MONOMYCIN A; NEOMYCIN E FORMUL 5 PAR 2(C23 H45 N5 O14) FORMUL 7 HOH *4(H2 O) SITE 1 AC1 9 A A 16 A A 17 A A 18 G A 19 SITE 2 AC1 9 U A 20 G B 28 U B 29 C B 30 SITE 3 AC1 9 G B 31 SITE 1 AC2 8 A C 16 A C 17 A C 18 G C 19 SITE 2 AC2 8 U C 20 G D 28 U D 29 G D 31 CRYST1 31.690 57.180 47.700 78.92 109.44 123.61 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031556 0.020977 0.010923 0.00000 SCALE2 0.000000 0.021000 -0.000213 0.00000 SCALE3 0.000000 0.000000 0.022232 0.00000