HEADER TRANSPORT PROTEIN 20-APR-15 4ZEB TITLE PBP ACCA FROM A. TUMEFACIENS C58 IN COMPLEX WITH AGROCINOPINE A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ABC TRANSPORTER, SUBSTRATE BINDING PROTEIN (AGROCINOPINES A COMPND 3 AND B); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 30-521; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS (STRAIN C58 / ATCC SOURCE 3 33970); SOURCE 4 ORGANISM_TAXID: 176299; SOURCE 5 STRAIN: C58 / ATCC 33970; SOURCE 6 GENE: ACCA, ATU6139; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PBP, CLASS C, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.EL SAHILI,S.MORERA REVDAT 4 07-FEB-24 4ZEB 1 REMARK REVDAT 3 20-APR-22 4ZEB 1 COMPND REMARK LINK ATOM REVDAT 2 29-JUL-20 4ZEB 1 COMPND SOURCE REMARK HET REVDAT 2 2 1 HETNAM HETSYN FORMUL LINK REVDAT 2 3 1 SITE ATOM REVDAT 1 19-AUG-15 4ZEB 0 JRNL AUTH A.EL SAHILI,S.Z.LI,J.LANG,C.VIRUS,S.PLANAMENTE,M.AHMAR, JRNL AUTH 2 B.G.GUIMARAES,M.AUMONT-NICAISE,A.VIGOUROUX,L.SOULERE, JRNL AUTH 3 J.READER,Y.QUENEAU,D.FAURE,S.MORERA JRNL TITL A PYRANOSE-2-PHOSPHATE MOTIF IS RESPONSIBLE FOR BOTH JRNL TITL 2 ANTIBIOTIC IMPORT AND QUORUM-SENSING REGULATION IN JRNL TITL 3 AGROBACTERIUM TUMEFACIENS. JRNL REF PLOS PATHOG. V. 11 05071 2015 JRNL REFN ESSN 1553-7374 JRNL PMID 26244338 JRNL DOI 10.1371/JOURNAL.PPAT.1005071 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 78050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3902 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.94 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.72 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4877 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3146 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4634 REMARK 3 BIN R VALUE (WORKING SET) : 0.3116 REMARK 3 BIN FREE R VALUE : 0.3741 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.98 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 243 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7886 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 528 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.33800 REMARK 3 B22 (A**2) : 0.23270 REMARK 3 B33 (A**2) : 6.10530 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.246 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.144 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 8217 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 11177 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2805 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 202 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1170 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 8217 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 1031 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 9892 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.06 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.71 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.17 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: A 32 A 521 REMARK 3 ORIGIN FOR THE GROUP (A): 35.8850 16.0808 32.2491 REMARK 3 T TENSOR REMARK 3 T11: -0.0839 T22: -0.0550 REMARK 3 T33: -0.0600 T12: 0.0236 REMARK 3 T13: 0.0236 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 0.5147 L22: 0.8021 REMARK 3 L33: 1.3758 L12: 0.2804 REMARK 3 L13: -0.3982 L23: -0.5419 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: -0.1036 S13: -0.0045 REMARK 3 S21: 0.1012 S22: -0.1354 S23: -0.0122 REMARK 3 S31: 0.0257 S32: 0.2552 S33: 0.0943 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: B 32 B 521 REMARK 3 ORIGIN FOR THE GROUP (A): 76.7638 -5.7498 20.6917 REMARK 3 T TENSOR REMARK 3 T11: -0.1193 T22: -0.0601 REMARK 3 T33: -0.0500 T12: 0.0183 REMARK 3 T13: 0.0069 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 1.1934 L22: 0.7828 REMARK 3 L33: 1.1601 L12: 0.5912 REMARK 3 L13: 0.4708 L23: 0.1760 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: -0.2864 S13: 0.1620 REMARK 3 S21: 0.0889 S22: -0.1150 S23: 0.0531 REMARK 3 S31: 0.0346 S32: -0.1032 S33: 0.0895 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78059 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11100 REMARK 200 FOR THE DATA SET : 7.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.92600 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OUP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 20K, 0.1M MES PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 88.60500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 88.60500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 29 REMARK 465 GLN A 30 REMARK 465 GLU A 31 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 465 HIS A 526 REMARK 465 HIS A 527 REMARK 465 MET B 29 REMARK 465 GLN B 30 REMARK 465 GLU B 31 REMARK 465 GLY B 253 REMARK 465 HIS B 522 REMARK 465 HIS B 523 REMARK 465 HIS B 524 REMARK 465 HIS B 525 REMARK 465 HIS B 526 REMARK 465 HIS B 527 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 P4 TT7 D 1 O2 ARA B 601 1.58 REMARK 500 P4 TT7 C 1 O2 ARA A 601 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 53 -176.80 178.26 REMARK 500 ALA A 87 -104.46 -136.64 REMARK 500 LEU A 130 -64.80 -106.27 REMARK 500 ASP A 215 -61.84 -138.10 REMARK 500 ASN A 374 42.10 -105.50 REMARK 500 TRP A 414 -80.77 -115.78 REMARK 500 THR A 425 48.26 -90.90 REMARK 500 LEU A 489 -66.72 -93.89 REMARK 500 SER A 508 37.25 -78.10 REMARK 500 ASN A 517 32.12 -158.13 REMARK 500 SER B 53 -175.55 -179.54 REMARK 500 ALA B 87 -104.87 -137.57 REMARK 500 LEU B 130 -63.47 -108.67 REMARK 500 ASP B 215 -61.22 -137.94 REMARK 500 ASN B 349 88.77 -152.63 REMARK 500 ASN B 374 41.48 -105.13 REMARK 500 PRO B 404 -13.83 -48.63 REMARK 500 SER B 406 26.21 172.15 REMARK 500 TRP B 414 -79.57 -115.74 REMARK 500 THR B 425 47.68 -89.52 REMARK 500 LEU B 489 -65.49 -93.98 REMARK 500 SER B 508 37.02 -77.88 REMARK 500 ASN B 517 32.53 -157.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 973 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 974 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A 975 DISTANCE = 9.32 ANGSTROMS REMARK 525 HOH B 952 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B 953 DISTANCE = 9.00 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 TT7 C 1 REMARK 610 TT7 D 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZE8 RELATED DB: PDB REMARK 900 RELATED ID: 4ZE9 RELATED DB: PDB REMARK 900 RELATED ID: 4RA1 RELATED DB: PDB DBREF 4ZEB A 30 521 UNP Q7D2F4 Q7D2F4_AGRT5 30 521 DBREF 4ZEB B 30 521 UNP Q7D2F4 Q7D2F4_AGRT5 30 521 SEQADV 4ZEB MET A 29 UNP Q7D2F4 INITIATING METHIONINE SEQADV 4ZEB HIS A 522 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB HIS A 523 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB HIS A 524 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB HIS A 525 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB HIS A 526 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB HIS A 527 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB MET B 29 UNP Q7D2F4 INITIATING METHIONINE SEQADV 4ZEB HIS B 522 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB HIS B 523 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB HIS B 524 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB HIS B 525 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB HIS B 526 UNP Q7D2F4 EXPRESSION TAG SEQADV 4ZEB HIS B 527 UNP Q7D2F4 EXPRESSION TAG SEQRES 1 A 499 MET GLN GLU ARG ARG ALA LEU ARG LEU GLY VAL ASN GLY SEQRES 2 A 499 LEU PRO ASN SER LEU GLU PRO VAL ASN ALA ILE SER ASN SEQRES 3 A 499 VAL GLY PRO ARG ILE VAL ASN GLN ILE PHE ASP THR LEU SEQRES 4 A 499 ILE ALA ARG ASP PHE PHE ALA LYS GLY ALA PRO GLY ASN SEQRES 5 A 499 ALA ILE ASP LEU VAL PRO ALA LEU ALA GLU SER TRP GLU SEQRES 6 A 499 ARG ILE ASP GLU LYS SER VAL ARG PHE LYS LEU ARG GLN SEQRES 7 A 499 LYS VAL MET PHE HIS ASP GLY VAL GLU LEU THR ALA ASP SEQRES 8 A 499 ASP VAL ALA TYR THR PHE SER SER GLU ARG LEU TRP GLY SEQRES 9 A 499 PRO GLU ALA ILE LYS LYS ILE PRO LEU GLY LYS SER TYR SEQRES 10 A 499 SER LEU ASP PHE ASP GLU PRO VAL VAL GLU ASP LYS TYR SEQRES 11 A 499 THR VAL THR LEU ARG THR LYS THR PRO SER TYR LEU ILE SEQRES 12 A 499 GLU THR PHE VAL ALA SER TRP MET SER ARG ILE VAL PRO SEQRES 13 A 499 LYS GLU TYR TYR LYS LYS LEU GLY ALA VAL ASP PHE GLY SEQRES 14 A 499 ASN LYS PRO VAL GLY THR GLY PRO TYR LYS PHE VAL GLU SEQRES 15 A 499 PHE VAL ALA GLY ASP ARG VAL VAL LEU GLU ALA ASN ASP SEQRES 16 A 499 ALA TYR TRP GLY PRO LYS PRO THR ALA SER LYS ILE THR SEQRES 17 A 499 TYR GLN ILE VAL ALA GLU PRO ALA THR ARG VAL ALA GLY SEQRES 18 A 499 LEU ILE SER GLY GLU TYR ASP ILE ILE THR THR LEU THR SEQRES 19 A 499 PRO ASP ASP ILE GLN LEU ILE ASN SER TYR PRO ASP LEU SEQRES 20 A 499 GLU THR ARG GLY THR LEU ILE GLU ASN PHE HIS MET PHE SEQRES 21 A 499 THR PHE ASN MET ASN GLN GLU VAL PHE LYS ASP LYS LYS SEQRES 22 A 499 LEU ARG ARG ALA LEU ALA LEU ALA VAL ASN ARG PRO ILE SEQRES 23 A 499 MET VAL GLU ALA LEU TRP LYS LYS GLN ALA SER ILE PRO SEQRES 24 A 499 ALA GLY PHE ASN PHE PRO ASN TYR GLY GLU THR PHE ASP SEQRES 25 A 499 PRO LYS ARG LYS ALA MET GLU TYR ASN VAL GLU GLU ALA SEQRES 26 A 499 LYS ARG LEU VAL LYS GLU SER GLY TYR ASP GLY THR PRO SEQRES 27 A 499 ILE THR TYR HIS THR MET GLY ASN TYR TYR ALA ASN ALA SEQRES 28 A 499 MET PRO ALA LEU MET MET MET ILE GLU MET TRP LYS GLN SEQRES 29 A 499 ILE GLY VAL ASN VAL VAL MET LYS THR TYR ALA PRO GLY SEQRES 30 A 499 SER PHE PRO PRO ASP ASN GLN THR TRP MET ARG ASN TRP SEQRES 31 A 499 SER ASN GLY GLN TRP MET THR ASP ALA TYR ALA THR ILE SEQRES 32 A 499 VAL PRO GLU PHE GLY PRO ASN GLY GLN VAL GLN LYS ARG SEQRES 33 A 499 TRP GLY TRP LYS ALA PRO ALA GLU PHE ASN GLU LEU CYS SEQRES 34 A 499 GLN LYS VAL THR VAL LEU PRO ASN GLY LYS GLU ARG PHE SEQRES 35 A 499 ASP ALA TYR ASN ARG MET ARG ASP ILE PHE GLU GLU GLU SEQRES 36 A 499 ALA PRO ALA VAL ILE LEU TYR GLN PRO TYR ASP VAL TYR SEQRES 37 A 499 ALA ALA ARG LYS ASP VAL HIS TRP LYS PRO VAL SER PHE SEQRES 38 A 499 GLU MET MET GLU PHE ARG ASN ASN LEU SER PHE GLY HIS SEQRES 39 A 499 HIS HIS HIS HIS HIS SEQRES 1 B 499 MET GLN GLU ARG ARG ALA LEU ARG LEU GLY VAL ASN GLY SEQRES 2 B 499 LEU PRO ASN SER LEU GLU PRO VAL ASN ALA ILE SER ASN SEQRES 3 B 499 VAL GLY PRO ARG ILE VAL ASN GLN ILE PHE ASP THR LEU SEQRES 4 B 499 ILE ALA ARG ASP PHE PHE ALA LYS GLY ALA PRO GLY ASN SEQRES 5 B 499 ALA ILE ASP LEU VAL PRO ALA LEU ALA GLU SER TRP GLU SEQRES 6 B 499 ARG ILE ASP GLU LYS SER VAL ARG PHE LYS LEU ARG GLN SEQRES 7 B 499 LYS VAL MET PHE HIS ASP GLY VAL GLU LEU THR ALA ASP SEQRES 8 B 499 ASP VAL ALA TYR THR PHE SER SER GLU ARG LEU TRP GLY SEQRES 9 B 499 PRO GLU ALA ILE LYS LYS ILE PRO LEU GLY LYS SER TYR SEQRES 10 B 499 SER LEU ASP PHE ASP GLU PRO VAL VAL GLU ASP LYS TYR SEQRES 11 B 499 THR VAL THR LEU ARG THR LYS THR PRO SER TYR LEU ILE SEQRES 12 B 499 GLU THR PHE VAL ALA SER TRP MET SER ARG ILE VAL PRO SEQRES 13 B 499 LYS GLU TYR TYR LYS LYS LEU GLY ALA VAL ASP PHE GLY SEQRES 14 B 499 ASN LYS PRO VAL GLY THR GLY PRO TYR LYS PHE VAL GLU SEQRES 15 B 499 PHE VAL ALA GLY ASP ARG VAL VAL LEU GLU ALA ASN ASP SEQRES 16 B 499 ALA TYR TRP GLY PRO LYS PRO THR ALA SER LYS ILE THR SEQRES 17 B 499 TYR GLN ILE VAL ALA GLU PRO ALA THR ARG VAL ALA GLY SEQRES 18 B 499 LEU ILE SER GLY GLU TYR ASP ILE ILE THR THR LEU THR SEQRES 19 B 499 PRO ASP ASP ILE GLN LEU ILE ASN SER TYR PRO ASP LEU SEQRES 20 B 499 GLU THR ARG GLY THR LEU ILE GLU ASN PHE HIS MET PHE SEQRES 21 B 499 THR PHE ASN MET ASN GLN GLU VAL PHE LYS ASP LYS LYS SEQRES 22 B 499 LEU ARG ARG ALA LEU ALA LEU ALA VAL ASN ARG PRO ILE SEQRES 23 B 499 MET VAL GLU ALA LEU TRP LYS LYS GLN ALA SER ILE PRO SEQRES 24 B 499 ALA GLY PHE ASN PHE PRO ASN TYR GLY GLU THR PHE ASP SEQRES 25 B 499 PRO LYS ARG LYS ALA MET GLU TYR ASN VAL GLU GLU ALA SEQRES 26 B 499 LYS ARG LEU VAL LYS GLU SER GLY TYR ASP GLY THR PRO SEQRES 27 B 499 ILE THR TYR HIS THR MET GLY ASN TYR TYR ALA ASN ALA SEQRES 28 B 499 MET PRO ALA LEU MET MET MET ILE GLU MET TRP LYS GLN SEQRES 29 B 499 ILE GLY VAL ASN VAL VAL MET LYS THR TYR ALA PRO GLY SEQRES 30 B 499 SER PHE PRO PRO ASP ASN GLN THR TRP MET ARG ASN TRP SEQRES 31 B 499 SER ASN GLY GLN TRP MET THR ASP ALA TYR ALA THR ILE SEQRES 32 B 499 VAL PRO GLU PHE GLY PRO ASN GLY GLN VAL GLN LYS ARG SEQRES 33 B 499 TRP GLY TRP LYS ALA PRO ALA GLU PHE ASN GLU LEU CYS SEQRES 34 B 499 GLN LYS VAL THR VAL LEU PRO ASN GLY LYS GLU ARG PHE SEQRES 35 B 499 ASP ALA TYR ASN ARG MET ARG ASP ILE PHE GLU GLU GLU SEQRES 36 B 499 ALA PRO ALA VAL ILE LEU TYR GLN PRO TYR ASP VAL TYR SEQRES 37 B 499 ALA ALA ARG LYS ASP VAL HIS TRP LYS PRO VAL SER PHE SEQRES 38 B 499 GLU MET MET GLU PHE ARG ASN ASN LEU SER PHE GLY HIS SEQRES 39 B 499 HIS HIS HIS HIS HIS HET TT7 C 1 15 HET 4GL C 2 11 HET TT7 D 1 15 HET 4GL D 2 11 HET ARA A 601 10 HET EDO A 602 4 HET ARA B 601 10 HET PEG B 602 7 HETNAM TT7 4-O-PHOSPHONO-BETA-D-FRUCTOFURANOSE HETNAM 4GL ALPHA-D-GULOPYRANOSE HETNAM ARA ALPHA-L-ARABINOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN 4GL ALPHA-D-GULOSE; D-GULOSE; GULOSE HETSYN ARA ALPHA-L-ARABINOSE; L-ARABINOSE; ARABINOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 TT7 2(C6 H13 O9 P) FORMUL 3 4GL 2(C6 H12 O6) FORMUL 5 ARA 2(C5 H10 O5) FORMUL 6 EDO C2 H6 O2 FORMUL 8 PEG C4 H10 O3 FORMUL 9 HOH *528(H2 O) HELIX 1 AA1 GLY A 56 PHE A 64 1 9 HELIX 2 AA2 PHE A 73 ALA A 77 5 5 HELIX 3 AA3 THR A 117 PHE A 125 1 9 HELIX 4 AA4 GLY A 132 ILE A 136 5 5 HELIX 5 AA5 LEU A 141 SER A 146 1 6 HELIX 6 AA6 LEU A 170 ALA A 176 1 7 HELIX 7 AA7 PRO A 184 LYS A 199 1 16 HELIX 8 AA8 GLU A 242 SER A 252 1 11 HELIX 9 AA9 THR A 262 ASP A 264 5 3 HELIX 10 AB1 ASP A 265 SER A 271 1 7 HELIX 11 AB2 GLN A 294 LYS A 298 5 5 HELIX 12 AB3 ASP A 299 ALA A 309 1 11 HELIX 13 AB4 ASN A 311 LYS A 321 1 11 HELIX 14 AB5 PHE A 332 PHE A 339 5 8 HELIX 15 AB6 ASN A 349 GLY A 361 1 13 HELIX 16 AB7 ASN A 378 GLN A 392 1 15 HELIX 17 AB8 PRO A 409 THR A 413 5 5 HELIX 18 AB9 ALA A 427 GLY A 436 1 10 HELIX 19 AC1 GLY A 439 ARG A 444 1 6 HELIX 20 AC2 PRO A 450 LEU A 463 1 14 HELIX 21 AC3 GLY A 466 ALA A 484 1 19 HELIX 22 AC4 GLY B 56 PHE B 64 1 9 HELIX 23 AC5 PHE B 73 ALA B 77 5 5 HELIX 24 AC6 THR B 117 PHE B 125 1 9 HELIX 25 AC7 GLY B 132 ILE B 136 5 5 HELIX 26 AC8 LEU B 141 SER B 146 1 6 HELIX 27 AC9 LEU B 170 ALA B 176 1 7 HELIX 28 AD1 PRO B 184 LYS B 199 1 16 HELIX 29 AD2 GLU B 242 SER B 252 1 11 HELIX 30 AD3 THR B 262 ASP B 264 5 3 HELIX 31 AD4 ASP B 265 SER B 271 1 7 HELIX 32 AD5 GLN B 294 LYS B 298 5 5 HELIX 33 AD6 LYS B 300 ALA B 309 1 10 HELIX 34 AD7 ASN B 311 LYS B 321 1 11 HELIX 35 AD8 PHE B 332 PHE B 339 5 8 HELIX 36 AD9 ASN B 349 GLY B 361 1 13 HELIX 37 AE1 ASN B 378 GLN B 392 1 15 HELIX 38 AE2 PRO B 409 THR B 413 5 5 HELIX 39 AE3 ALA B 427 GLY B 436 1 10 HELIX 40 AE4 GLY B 439 ARG B 444 1 6 HELIX 41 AE5 PRO B 450 LEU B 463 1 14 HELIX 42 AE6 GLY B 466 ALA B 484 1 19 SHEET 1 AA1 7 TYR A 206 VAL A 212 0 SHEET 2 AA1 7 ARG A 216 ALA A 221 -1 O GLU A 220 N LYS A 207 SHEET 3 AA1 7 LYS A 234 ILE A 239 -1 O TYR A 237 N VAL A 217 SHEET 4 AA1 7 LEU A 35 VAL A 39 1 N LEU A 35 O LYS A 234 SHEET 5 AA1 7 ILE A 257 LEU A 261 1 O ILE A 257 N GLY A 38 SHEET 6 AA1 7 TYR A 493 ARG A 499 -1 O ALA A 497 N ILE A 258 SHEET 7 AA1 7 LEU A 275 LEU A 281 -1 N GLU A 276 O ALA A 498 SHEET 1 AA2 2 ILE A 68 ARG A 70 0 SHEET 2 AA2 2 LEU A 84 PRO A 86 -1 O VAL A 85 N ALA A 69 SHEET 1 AA3 4 ALA A 89 ASP A 96 0 SHEET 2 AA3 4 SER A 99 LEU A 104 -1 O LYS A 103 N SER A 91 SHEET 3 AA3 4 THR A 159 THR A 164 -1 O VAL A 160 N PHE A 102 SHEET 4 AA3 4 PHE A 149 ASP A 156 -1 N VAL A 153 O THR A 161 SHEET 1 AA4 5 VAL A 397 THR A 401 0 SHEET 2 AA4 5 ILE A 367 THR A 371 1 N TYR A 369 O LYS A 400 SHEET 3 AA4 5 MET A 415 GLY A 421 1 O MET A 415 N THR A 368 SHEET 4 AA4 5 ASN A 284 PHE A 290 -1 N THR A 289 O ARG A 416 SHEET 5 AA4 5 ALA A 486 TYR A 490 -1 O VAL A 487 N PHE A 288 SHEET 1 AA5 2 VAL A 502 HIS A 503 0 SHEET 2 AA5 2 SER A 519 PHE A 520 -1 O SER A 519 N HIS A 503 SHEET 1 AA6 7 TYR B 206 VAL B 212 0 SHEET 2 AA6 7 ARG B 216 ALA B 221 -1 O GLU B 220 N LYS B 207 SHEET 3 AA6 7 LYS B 234 ILE B 239 -1 O TYR B 237 N VAL B 217 SHEET 4 AA6 7 LEU B 35 VAL B 39 1 N LEU B 35 O LYS B 234 SHEET 5 AA6 7 ILE B 257 LEU B 261 1 O ILE B 257 N GLY B 38 SHEET 6 AA6 7 TYR B 493 ARG B 499 -1 O ALA B 497 N ILE B 258 SHEET 7 AA6 7 LEU B 275 LEU B 281 -1 N GLU B 276 O ALA B 498 SHEET 1 AA7 2 ILE B 68 ARG B 70 0 SHEET 2 AA7 2 LEU B 84 PRO B 86 -1 O VAL B 85 N ALA B 69 SHEET 1 AA8 4 ALA B 89 ASP B 96 0 SHEET 2 AA8 4 SER B 99 LEU B 104 -1 O LYS B 103 N SER B 91 SHEET 3 AA8 4 THR B 159 THR B 164 -1 O VAL B 160 N PHE B 102 SHEET 4 AA8 4 PHE B 149 ASP B 156 -1 N VAL B 153 O THR B 161 SHEET 1 AA9 5 VAL B 397 THR B 401 0 SHEET 2 AA9 5 ILE B 367 THR B 371 1 N TYR B 369 O LYS B 400 SHEET 3 AA9 5 MET B 415 GLY B 421 1 O MET B 415 N THR B 368 SHEET 4 AA9 5 ASN B 284 PHE B 290 -1 N THR B 289 O ARG B 416 SHEET 5 AA9 5 ALA B 486 TYR B 490 -1 O VAL B 487 N PHE B 288 SHEET 1 AB1 2 VAL B 502 HIS B 503 0 SHEET 2 AB1 2 SER B 519 PHE B 520 -1 O SER B 519 N HIS B 503 LINK O2 TT7 C 1 C1 4GL C 2 1555 1555 1.42 LINK O2 TT7 D 1 C1 4GL D 2 1555 1555 1.43 CISPEP 1 ALA A 429 THR A 430 0 1.41 CISPEP 2 GLY B 405 SER B 406 0 -21.65 CISPEP 3 ALA B 429 THR B 430 0 1.38 CRYST1 177.210 51.240 119.950 90.00 114.33 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005643 0.000000 0.002551 0.00000 SCALE2 0.000000 0.019516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009149 0.00000