HEADER HYDROLASE/HYDROLASE INHIBITOR 22-APR-15 4ZG7 TITLE STRUCTURAL BASIS FOR INHIBITION OF HUMAN AUTOTAXIN BY FOUR NOVEL TITLE 2 COMPOUNDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE FAMILY COMPND 3 MEMBER 2; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 55-860; COMPND 6 SYNONYM: E-NPP 2,AUTOTAXIN,EXTRACELLULAR LYSOPHOSPHOLIPASE D,LYSOPLD; COMPND 7 EC: 3.1.4.39; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENPP2, ATX, PDNP2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACMID KEYWDS AUTOTAXIN, ENPP2, INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.STEIN,G.BAIN,J.H.HUTCHINSON,J.F.EVANS REVDAT 3 29-JUL-20 4ZG7 1 COMPND JRNL REMARK HETNAM REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 11-NOV-15 4ZG7 1 JRNL REVDAT 1 14-OCT-15 4ZG7 0 JRNL AUTH A.J.STEIN,G.BAIN,P.PRODANOVICH,A.M.SANTINI,J.DARLINGTON, JRNL AUTH 2 N.M.STELZER,R.S.SIDHU,J.SCHAUB,L.GOULET,D.LONERGAN, JRNL AUTH 3 I.CALDERON,J.F.EVANS,J.H.HUTCHINSON JRNL TITL STRUCTURAL BASIS FOR INHIBITION OF HUMAN AUTOTAXIN BY FOUR JRNL TITL 2 POTENT COMPOUNDS WITH DISTINCT MODES OF BINDING. JRNL REF MOL.PHARMACOL. V. 88 982 2015 JRNL REFN ESSN 1521-0111 JRNL PMID 26371182 JRNL DOI 10.1124/MOL.115.100404 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.61 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 76587 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4053 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6195 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 495 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.110 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.190 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ZG7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209210. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-325 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.49400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2 M NACL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.90950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 461 REMARK 465 TYR A 462 REMARK 465 LYS A 463 REMARK 465 LYS A 464 REMARK 465 PRO A 465 REMARK 465 SER A 466 REMARK 465 GLY A 467 REMARK 465 LYS A 468 REMARK 465 LYS A 572 REMARK 465 VAL A 573 REMARK 465 GLU A 574 REMARK 465 PRO A 575 REMARK 465 LYS A 576 REMARK 465 ASN A 577 REMARK 465 LYS A 578 REMARK 465 LEU A 579 REMARK 465 ASP A 580 REMARK 465 GLU A 581 REMARK 465 LEU A 582 REMARK 465 ASN A 583 REMARK 465 LYS A 584 REMARK 465 ARG A 585 REMARK 465 LEU A 586 REMARK 465 HIS A 587 REMARK 465 THR A 588 REMARK 465 LYS A 589 REMARK 465 GLY A 590 REMARK 465 SER A 591 REMARK 465 THR A 592 REMARK 465 GLU A 593 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 55 CG1 CG2 CD1 REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 180 CG CD CE NZ REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 399 CG OD1 ND2 REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 LYS A 406 CG CD CE NZ REMARK 470 LEU A 459 CG CD1 CD2 REMARK 470 PHE A 470 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 541 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 550 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 595 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 641 CG CD OE1 OE2 REMARK 470 LYS A 674 CG CD CE NZ REMARK 470 LYS A 814 CG CD CE NZ REMARK 470 LYS A 841 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 547 O HOH A 1001 1.85 REMARK 500 O PRO A 71 O HOH A 1002 2.06 REMARK 500 OE1 GLU A 860 O HOH A 1003 2.08 REMARK 500 CD GLU A 122 O HOH A 1008 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1002 O HOH A 1010 2454 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 149 CA - CB - SG ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 66 46.47 -93.13 REMARK 500 ALA A 436 -37.03 -151.11 REMARK 500 ARG A 451 -4.18 88.34 REMARK 500 ASP A 478 128.12 -32.85 REMARK 500 THR A 608 -168.97 -164.27 REMARK 500 SER A 677 -162.31 -120.43 REMARK 500 TRP A 815 -22.34 -144.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 904 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 172 OD1 REMARK 620 2 THR A 210 OG1 121.6 REMARK 620 3 ASP A 359 OD2 102.9 98.2 REMARK 620 4 HIS A 360 NE2 111.7 119.6 95.6 REMARK 620 5 NKN A 909 OAD 89.2 61.8 160.0 94.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 903 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 312 OD1 REMARK 620 2 ASP A 312 OD2 56.0 REMARK 620 3 HIS A 316 NE2 106.5 89.4 REMARK 620 4 HIS A 475 NE2 93.9 149.5 106.0 REMARK 620 5 NKN A 909 OAA 151.0 116.0 101.0 87.3 REMARK 620 6 NKN A 909 OAD 85.7 80.4 156.1 93.3 65.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 906 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 670 O REMARK 620 2 ASP A 673 O 93.0 REMARK 620 3 MET A 676 O 108.1 95.2 REMARK 620 4 HOH A1400 O 85.1 82.4 166.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 905 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 740 OD1 REMARK 620 2 ASP A 742 OD1 84.7 REMARK 620 3 ASP A 744 OD1 78.2 87.7 REMARK 620 4 LEU A 746 O 87.4 170.3 85.4 REMARK 620 5 ASP A 748 OD1 102.4 86.8 174.4 100.2 REMARK 620 6 HOH A1429 O 166.1 97.9 88.2 88.5 91.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 907 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 802 O REMARK 620 2 SER A 805 O 82.0 REMARK 620 3 SER A 808 OG 91.5 86.0 REMARK 620 4 HOH A1219 O 77.7 158.9 89.1 REMARK 620 5 HOH A1345 O 95.0 90.5 172.1 96.7 REMARK 620 6 HOH A1447 O 166.6 111.2 91.9 89.4 82.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZG6 RELATED DB: PDB REMARK 900 RELATED ID: 4ZG9 RELATED DB: PDB REMARK 900 RELATED ID: 4ZGA RELATED DB: PDB DBREF 4ZG7 A 55 860 UNP Q13822 ENPP2_HUMAN 55 860 SEQADV 4ZG7 ALA A 411 UNP Q13822 ASN 411 CONFLICT SEQADV 4ZG7 PRO A 493 UNP Q13822 SER 493 VARIANT SEQRES 1 A 806 ILE SER GLY SER CYS LYS GLY ARG CYS PHE GLU LEU GLN SEQRES 2 A 806 GLU ALA GLY PRO PRO ASP CYS ARG CYS ASP ASN LEU CYS SEQRES 3 A 806 LYS SER TYR THR SER CYS CYS HIS ASP PHE ASP GLU LEU SEQRES 4 A 806 CYS LEU LYS THR ALA ARG GLY TRP GLU CYS THR LYS ASP SEQRES 5 A 806 ARG CYS GLY GLU VAL ARG ASN GLU GLU ASN ALA CYS HIS SEQRES 6 A 806 CYS SER GLU ASP CYS LEU ALA ARG GLY ASP CYS CYS THR SEQRES 7 A 806 ASN TYR GLN VAL VAL CYS LYS GLY GLU SER HIS TRP VAL SEQRES 8 A 806 ASP ASP ASP CYS GLU GLU ILE LYS ALA ALA GLU CYS PRO SEQRES 9 A 806 ALA GLY PHE VAL ARG PRO PRO LEU ILE ILE PHE SER VAL SEQRES 10 A 806 ASP GLY PHE ARG ALA SER TYR MET LYS LYS GLY SER LYS SEQRES 11 A 806 VAL MET PRO ASN ILE GLU LYS LEU ARG SER CYS GLY THR SEQRES 12 A 806 HIS SER PRO TYR MET ARG PRO VAL TYR PRO THR LYS THR SEQRES 13 A 806 PHE PRO ASN LEU TYR THR LEU ALA THR GLY LEU TYR PRO SEQRES 14 A 806 GLU SER HIS GLY ILE VAL GLY ASN SER MET TYR ASP PRO SEQRES 15 A 806 VAL PHE ASP ALA THR PHE HIS LEU ARG GLY ARG GLU LYS SEQRES 16 A 806 PHE ASN HIS ARG TRP TRP GLY GLY GLN PRO LEU TRP ILE SEQRES 17 A 806 THR ALA THR LYS GLN GLY VAL LYS ALA GLY THR PHE PHE SEQRES 18 A 806 TRP SER VAL VAL ILE PRO HIS GLU ARG ARG ILE LEU THR SEQRES 19 A 806 ILE LEU GLN TRP LEU THR LEU PRO ASP HIS GLU ARG PRO SEQRES 20 A 806 SER VAL TYR ALA PHE TYR SER GLU GLN PRO ASP PHE SER SEQRES 21 A 806 GLY HIS LYS TYR GLY PRO PHE GLY PRO GLU MET THR ASN SEQRES 22 A 806 PRO LEU ARG GLU ILE ASP LYS ILE VAL GLY GLN LEU MET SEQRES 23 A 806 ASP GLY LEU LYS GLN LEU LYS LEU HIS ARG CYS VAL ASN SEQRES 24 A 806 VAL ILE PHE VAL GLY ASP HIS GLY MET GLU ASP VAL THR SEQRES 25 A 806 CYS ASP ARG THR GLU PHE LEU SER ASN TYR LEU THR ASN SEQRES 26 A 806 VAL ASP ASP ILE THR LEU VAL PRO GLY THR LEU GLY ARG SEQRES 27 A 806 ILE ARG SER LYS PHE SER ASN ASN ALA LYS TYR ASP PRO SEQRES 28 A 806 LYS ALA ILE ILE ALA ALA LEU THR CYS LYS LYS PRO ASP SEQRES 29 A 806 GLN HIS PHE LYS PRO TYR LEU LYS GLN HIS LEU PRO LYS SEQRES 30 A 806 ARG LEU HIS TYR ALA ASN ASN ARG ARG ILE GLU ASP ILE SEQRES 31 A 806 HIS LEU LEU VAL GLU ARG ARG TRP HIS VAL ALA ARG LYS SEQRES 32 A 806 PRO LEU ASP VAL TYR LYS LYS PRO SER GLY LYS CYS PHE SEQRES 33 A 806 PHE GLN GLY ASP HIS GLY PHE ASP ASN LYS VAL ASN SER SEQRES 34 A 806 MET GLN THR VAL PHE VAL GLY TYR GLY PRO THR PHE LYS SEQRES 35 A 806 TYR LYS THR LYS VAL PRO PRO PHE GLU ASN ILE GLU LEU SEQRES 36 A 806 TYR ASN VAL MET CYS ASP LEU LEU GLY LEU LYS PRO ALA SEQRES 37 A 806 PRO ASN ASN GLY THR HIS GLY SER LEU ASN HIS LEU LEU SEQRES 38 A 806 ARG THR ASN THR PHE ARG PRO THR MET PRO GLU GLU VAL SEQRES 39 A 806 THR ARG PRO ASN TYR PRO GLY ILE MET TYR LEU GLN SER SEQRES 40 A 806 ASP PHE ASP LEU GLY CYS THR CYS ASP ASP LYS VAL GLU SEQRES 41 A 806 PRO LYS ASN LYS LEU ASP GLU LEU ASN LYS ARG LEU HIS SEQRES 42 A 806 THR LYS GLY SER THR GLU GLU ARG HIS LEU LEU TYR GLY SEQRES 43 A 806 ARG PRO ALA VAL LEU TYR ARG THR ARG TYR ASP ILE LEU SEQRES 44 A 806 TYR HIS THR ASP PHE GLU SER GLY TYR SER GLU ILE PHE SEQRES 45 A 806 LEU MET PRO LEU TRP THR SER TYR THR VAL SER LYS GLN SEQRES 46 A 806 ALA GLU VAL SER SER VAL PRO ASP HIS LEU THR SER CYS SEQRES 47 A 806 VAL ARG PRO ASP VAL ARG VAL SER PRO SER PHE SER GLN SEQRES 48 A 806 ASN CYS LEU ALA TYR LYS ASN ASP LYS GLN MET SER TYR SEQRES 49 A 806 GLY PHE LEU PHE PRO PRO TYR LEU SER SER SER PRO GLU SEQRES 50 A 806 ALA LYS TYR ASP ALA PHE LEU VAL THR ASN MET VAL PRO SEQRES 51 A 806 MET TYR PRO ALA PHE LYS ARG VAL TRP ASN TYR PHE GLN SEQRES 52 A 806 ARG VAL LEU VAL LYS LYS TYR ALA SER GLU ARG ASN GLY SEQRES 53 A 806 VAL ASN VAL ILE SER GLY PRO ILE PHE ASP TYR ASP TYR SEQRES 54 A 806 ASP GLY LEU HIS ASP THR GLU ASP LYS ILE LYS GLN TYR SEQRES 55 A 806 VAL GLU GLY SER SER ILE PRO VAL PRO THR HIS TYR TYR SEQRES 56 A 806 SER ILE ILE THR SER CYS LEU ASP PHE THR GLN PRO ALA SEQRES 57 A 806 ASP LYS CYS ASP GLY PRO LEU SER VAL SER SER PHE ILE SEQRES 58 A 806 LEU PRO HIS ARG PRO ASP ASN GLU GLU SER CYS ASN SER SEQRES 59 A 806 SER GLU ASP GLU SER LYS TRP VAL GLU GLU LEU MET LYS SEQRES 60 A 806 MET HIS THR ALA ARG VAL ARG ASP ILE GLU HIS LEU THR SEQRES 61 A 806 SER LEU ASP PHE PHE ARG LYS THR SER ARG SER TYR PRO SEQRES 62 A 806 GLU ILE LEU THR LEU LYS THR TYR LEU HIS THR TYR GLU HET NAG B 1 14 HET NAG B 2 14 HET ZN A 903 1 HET ZN A 904 1 HET CA A 905 1 HET NA A 906 1 HET NA A 907 1 HET 4O0 A 908 37 HET NKN A 909 25 HET GOL A 910 6 HET GOL A 911 6 HET GOL A 912 6 HET GOL A 913 6 HET GOL A 914 6 HET GOL A 915 6 HET GOL A 916 6 HET CL A 917 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM 4O0 3-({6-CHLORO-7-FLUORO-2-METHYL-1-[2-OXO-2- HETNAM 2 4O0 (SPIRO[CYCLOPROPANE-1,3'-INDOL]-1'(2'H)-YL)ETHYL]-1H- HETNAM 3 4O0 INDOL-3-YL}SULFANYL)-2-FLUOROBENZOIC ACID HETNAM NKN (2R)-2-HYDROXY-3-(PHOSPHONOOXY)PROPYL TETRADECANOATE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN NKN 14:0 LPA, MYRISTOYL LYSOPHOSPHATIDIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 CA CA 2+ FORMUL 6 NA 2(NA 1+) FORMUL 8 4O0 C28 H21 CL F2 N2 O3 S FORMUL 9 NKN C17 H35 O7 P FORMUL 10 GOL 7(C3 H8 O3) FORMUL 17 CL CL 1- FORMUL 18 HOH *495(H2 O) HELIX 1 AA1 LEU A 79 THR A 84 5 6 HELIX 2 AA2 ASP A 89 LEU A 95 1 7 HELIX 3 AA3 THR A 104 CYS A 108 5 5 HELIX 4 AA4 ASP A 123 GLY A 128 1 6 HELIX 5 AA5 ASN A 133 LYS A 139 1 7 HELIX 6 AA6 HIS A 143 ASP A 147 5 5 HELIX 7 AA7 ARG A 175 LYS A 180 5 6 HELIX 8 AA8 LYS A 181 MET A 186 1 6 HELIX 9 AA9 MET A 186 GLY A 196 1 11 HELIX 10 AB1 LYS A 209 GLY A 220 1 12 HELIX 11 AB2 TYR A 222 GLY A 227 1 6 HELIX 12 AB3 ARG A 247 TRP A 255 5 9 HELIX 13 AB4 PRO A 259 GLN A 267 1 9 HELIX 14 AB5 PRO A 281 LEU A 293 1 13 HELIX 15 AB6 ASP A 312 GLY A 319 1 8 HELIX 16 AB7 GLY A 322 GLU A 324 5 3 HELIX 17 AB8 MET A 325 LEU A 346 1 22 HELIX 18 AB9 SER A 374 TYR A 376 5 3 HELIX 19 AC1 ASP A 404 THR A 413 1 10 HELIX 20 AC2 GLN A 427 LEU A 429 5 3 HELIX 21 AC3 PRO A 430 HIS A 434 5 5 HELIX 22 AC4 VAL A 481 GLN A 485 5 5 HELIX 23 AC5 GLU A 508 LEU A 517 1 10 HELIX 24 AC6 LEU A 531 LEU A 535 5 5 HELIX 25 AC7 LEU A 559 PHE A 563 5 5 HELIX 26 AC8 PRO A 646 THR A 650 5 5 HELIX 27 AC9 SER A 660 SER A 664 5 5 HELIX 28 AD1 ASN A 666 ASP A 673 1 8 HELIX 29 AD2 PRO A 683 SER A 687 5 5 HELIX 30 AD3 ALA A 692 PHE A 697 1 6 HELIX 31 AD4 LEU A 698 THR A 700 5 3 HELIX 32 AD5 TYR A 706 VAL A 719 1 14 HELIX 33 AD6 VAL A 719 ASN A 729 1 11 HELIX 34 AD7 THR A 749 ILE A 753 5 5 HELIX 35 AD8 PRO A 781 CYS A 785 5 5 HELIX 36 AD9 ASP A 811 LYS A 814 5 4 HELIX 37 AE1 TRP A 815 HIS A 823 1 9 HELIX 38 AE2 ARG A 826 SER A 835 1 10 HELIX 39 AE3 SER A 845 TYR A 855 1 11 SHEET 1 AA1 6 VAL A 303 PRO A 311 0 SHEET 2 AA1 6 LEU A 166 ASP A 172 1 N SER A 170 O PHE A 306 SHEET 3 AA1 6 ASN A 353 GLY A 358 1 O ILE A 355 N PHE A 169 SHEET 4 AA1 6 PHE A 488 TYR A 491 -1 O TYR A 491 N VAL A 354 SHEET 5 AA1 6 THR A 197 HIS A 198 -1 N THR A 197 O GLY A 490 SHEET 6 AA1 6 THR A 499 LYS A 500 1 O THR A 499 N HIS A 198 SHEET 1 AA2 2 MET A 202 ARG A 203 0 SHEET 2 AA2 2 PHE A 504 GLU A 505 1 O PHE A 504 N ARG A 203 SHEET 1 AA3 2 MET A 233 ASP A 235 0 SHEET 2 AA3 2 ALA A 240 PHE A 242 -1 O PHE A 242 N MET A 233 SHEET 1 AA4 2 GLU A 363 ASP A 364 0 SHEET 2 AA4 2 GLY A 473 ASP A 474 -1 O ASP A 474 N GLU A 363 SHEET 1 AA5 2 THR A 370 PHE A 372 0 SHEET 2 AA5 2 HIS A 453 ALA A 455 1 O HIS A 453 N GLU A 371 SHEET 1 AA6 4 ILE A 383 VAL A 386 0 SHEET 2 AA6 4 LEU A 390 SER A 395 -1 O ARG A 392 N VAL A 386 SHEET 3 AA6 4 ILE A 444 VAL A 448 -1 O LEU A 446 N GLY A 391 SHEET 4 AA6 4 PHE A 421 LEU A 425 -1 N TYR A 424 O HIS A 445 SHEET 1 AA7 2 ALA A 603 VAL A 604 0 SHEET 2 AA7 2 LEU A 836 ASP A 837 -1 O ASP A 837 N ALA A 603 SHEET 1 AA8 7 TYR A 610 TYR A 614 0 SHEET 2 AA8 7 GLU A 619 SER A 623 -1 O TYR A 622 N ASP A 611 SHEET 3 AA8 7 PRO A 629 VAL A 636 -1 O SER A 633 N GLU A 619 SHEET 4 AA8 7 VAL A 731 ILE A 738 -1 O VAL A 733 N TYR A 634 SHEET 5 AA8 7 HIS A 767 CYS A 775 -1 O THR A 773 N ASN A 732 SHEET 6 AA8 7 LEU A 789 PRO A 797 -1 O SER A 792 N ILE A 772 SHEET 7 AA8 7 THR A 824 ALA A 825 -1 O ALA A 825 N SER A 793 SHEET 1 AA9 2 SER A 677 PHE A 680 0 SHEET 2 AA9 2 MET A 702 MET A 705 -1 O VAL A 703 N GLY A 679 SSBOND 1 CYS A 59 CYS A 76 1555 1555 2.03 SSBOND 2 CYS A 63 CYS A 94 1555 1555 2.03 SSBOND 3 CYS A 74 CYS A 87 1555 1555 2.06 SSBOND 4 CYS A 80 CYS A 86 1555 1555 2.04 SSBOND 5 CYS A 103 CYS A 120 1555 1555 2.02 SSBOND 6 CYS A 108 CYS A 138 1555 1555 2.07 SSBOND 7 CYS A 118 CYS A 131 1555 1555 2.06 SSBOND 8 CYS A 124 CYS A 130 1555 1555 2.01 SSBOND 9 CYS A 149 CYS A 195 1555 1555 2.02 SSBOND 10 CYS A 157 CYS A 351 1555 1555 2.05 SSBOND 11 CYS A 367 CYS A 469 1555 1555 2.02 SSBOND 12 CYS A 414 CYS A 806 1555 1555 2.02 SSBOND 13 CYS A 567 CYS A 667 1555 1555 2.06 SSBOND 14 CYS A 569 CYS A 652 1555 1555 2.07 SSBOND 15 CYS A 775 CYS A 785 1555 1555 2.06 LINK ND2 ASN A 525 C1 NAG B 1 1555 1555 1.43 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK OD1 ASP A 172 ZN ZN A 904 1555 1555 2.00 LINK OG1 THR A 210 ZN ZN A 904 1555 1555 1.96 LINK OD1 ASP A 312 ZN ZN A 903 1555 1555 2.10 LINK OD2 ASP A 312 ZN ZN A 903 1555 1555 2.50 LINK NE2 HIS A 316 ZN ZN A 903 1555 1555 2.05 LINK OD2 ASP A 359 ZN ZN A 904 1555 1555 2.07 LINK NE2 HIS A 360 ZN ZN A 904 1555 1555 2.07 LINK NE2 HIS A 475 ZN ZN A 903 1555 1555 2.11 LINK O TYR A 670 NA NA A 906 1555 1555 2.25 LINK O ASP A 673 NA NA A 906 1555 1555 2.07 LINK O MET A 676 NA NA A 906 1555 1555 2.24 LINK OD1 ASP A 740 CA CA A 905 1555 1555 2.27 LINK OD1 ASP A 742 CA CA A 905 1555 1555 2.29 LINK OD1 ASP A 744 CA CA A 905 1555 1555 2.33 LINK O LEU A 746 CA CA A 905 1555 1555 2.34 LINK OD1 ASP A 748 CA CA A 905 1555 1555 2.30 LINK O ASN A 802 NA NA A 907 1555 1555 2.47 LINK O SER A 805 NA NA A 907 1555 1555 2.43 LINK OG SER A 808 NA NA A 907 1555 1555 2.19 LINK ZN ZN A 903 OAA NKN A 909 1555 1555 2.43 LINK ZN ZN A 903 OAD NKN A 909 1555 1555 2.43 LINK ZN ZN A 904 OAD NKN A 909 1555 1555 2.56 LINK CA CA A 905 O HOH A1429 1555 1555 2.30 LINK NA NA A 906 O HOH A1400 1555 1555 2.48 LINK NA NA A 907 O HOH A1219 1555 1555 2.50 LINK NA NA A 907 O HOH A1345 1555 1555 2.30 LINK NA NA A 907 O HOH A1447 1555 1555 2.50 CISPEP 1 PRO A 71 PRO A 72 0 8.80 CISPEP 2 TYR A 206 PRO A 207 0 -6.06 CISPEP 3 GLN A 310 PRO A 311 0 4.98 CRYST1 61.770 85.819 83.855 90.00 111.34 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016189 0.000000 0.006325 0.00000 SCALE2 0.000000 0.011652 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012803 0.00000