HEADER UNKNOWN FUNCTION 22-APR-15 4ZGF TITLE CRYSTAL STRUCTURE OF A DUF4847 FAMILY PROTEIN (BVU_2626) FROM TITLE 2 BACTEROIDES VULGATUS ATCC 8482 AT 1.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482 / DSM 1447 / NCTC 11154; SOURCE 5 GENE: BVU_2626; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 3 01-FEB-23 4ZGF 1 SEQADV LINK REVDAT 2 22-NOV-17 4ZGF 1 SOURCE REMARK REVDAT 1 06-MAY-15 4ZGF 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A DUF4847 FAMILY PROTEIN (BVU_2626) JRNL TITL 2 FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.30 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 72915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.117 REMARK 3 R VALUE (WORKING SET) : 0.116 REMARK 3 FREE R VALUE : 0.137 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3681 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4913 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 240 REMARK 3 BIN FREE R VALUE : 0.2450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 232 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 6.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.021 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.022 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.014 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.632 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.977 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1447 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1335 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1963 ; 1.721 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3125 ; 1.010 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 187 ; 6.208 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 71 ;36.310 ;26.197 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 230 ;10.315 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;10.384 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 193 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1723 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 336 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 680 ; 0.684 ; 0.773 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 677 ; 0.676 ; 0.770 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 879 ; 0.892 ; 1.168 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2779 ; 2.399 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 41 ;25.909 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2946 ; 7.062 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 3. HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. 4. PEG (P6G), BEZ, CA AND ACT MODELED WERE PRESENT IN REMARK 3 CRYSTALLIZATION/PROTEIN CONDITION. REMARK 4 REMARK 4 4ZGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95369,0.97946,0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE NOVEMBER 3, 2014 REMARK 200 BUILT=20141118 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.304 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 2.035 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.64400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 40% POLYETHYLENE REMARK 280 GLYCOL 400, 0.2M CALCIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.87350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.08800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.74300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.08800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.87350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.74300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 486 O HOH A 505 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 30 47.69 -97.99 REMARK 500 VAL A 37 -62.26 -92.51 REMARK 500 ASN A 95 -3.35 72.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 205 REMARK 610 P6G A 206 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD2 REMARK 620 2 ASP A 108 OD2 110.1 REMARK 620 3 HOH A 303 O 128.2 61.8 REMARK 620 4 HOH A 307 O 75.1 173.0 119.1 REMARK 620 5 HOH A 403 O 106.4 75.4 118.4 98.8 REMARK 620 6 HOH A 413 O 79.5 88.1 50.5 97.6 163.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 112 OD1 REMARK 620 2 ILE A 113 O 94.0 REMARK 620 3 ASN A 114 OD1 79.9 75.6 REMARK 620 4 ASP A 164 O 91.8 23.0 97.7 REMARK 620 5 ASP A 164 OD1 88.8 19.2 92.9 5.3 REMARK 620 6 HOH A 381 O 86.0 21.5 93.8 6.5 3.2 REMARK 620 7 HOH A 418 O 83.9 22.5 93.6 8.4 5.2 2.1 REMARK 620 8 HOH A 460 O 87.0 24.4 97.3 4.9 5.2 3.6 4.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 133 O REMARK 620 2 ASP A 164 OD1 11.8 REMARK 620 3 ASP A 164 OD2 15.1 3.9 REMARK 620 4 HOH A 353 O 18.9 7.4 6.3 REMARK 620 5 HOH A 381 O 12.4 3.4 6.4 6.9 REMARK 620 6 HOH A 391 O 19.5 7.8 5.7 1.8 7.9 REMARK 620 7 HOH A 391 O 19.3 7.5 5.1 2.4 8.0 0.7 REMARK 620 8 HOH A 412 O 16.7 5.1 4.4 2.3 4.9 3.0 3.1 REMARK 620 9 HOH A 418 O 14.4 5.2 7.4 5.8 2.2 7.2 7.5 4.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 210 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419464 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (25-164) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4ZGF A 25 164 UNP A6L3L5 A6L3L5_BACV8 25 164 SEQADV 4ZGF GLY A 0 UNP A6L3L5 EXPRESSION TAG SEQRES 1 A 141 GLY VAL GLU GLU ILE PHE ALA SER GLY THR TRP HIS VAL SEQRES 2 A 141 VAL ASP PHE TYR GLY LYS ALA ASN TRP ASP LYS ARG ASN SEQRES 3 A 141 GLY GLU PRO LYS TYR ASN ALA MSE ALA HIS ASN PRO ASP SEQRES 4 A 141 LYS THR ILE ALA THR GLU GLY ARG LYS ALA LEU ASP ILE SEQRES 5 A 141 ILE HIS GLY PHE ASN ILE THR PHE LYS ALA ASP GLY THR SEQRES 6 A 141 PHE THR GLY SER ILE GLN ASN GLY THR ILE GLU GLY THR SEQRES 7 A 141 TRP GLN ALA ASP GLY LYS ASP ARG THR VAL ASN ILE ASN SEQRES 8 A 141 PHE THR LYS THR PRO PRO SER THR SER TYR ASN ASN GLU SEQRES 9 A 141 PHE ILE GLU ALA LEU ASN ASN ALA ILE PHE TYR GLN GLY SEQRES 10 A 141 ASP SER ASN VAL LEU LEU LEU ALA PRO GLU GLY LYS LYS SEQRES 11 A 141 THR TYR ILE GLN PHE ALA HIS ASN LYS GLN ASP MODRES 4ZGF MSE A 57 MET MODIFIED RESIDUE HET MSE A 57 8 HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET P6G A 204 19 HET P6G A 205 13 HET P6G A 206 16 HET P6G A 207 23 HET ACT A 208 4 HET ACT A 209 4 HET BEZ A 210 9 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM ACT ACETATE ION HETNAM BEZ BENZOIC ACID HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE C5 H11 N O2 SE FORMUL 2 CA 3(CA 2+) FORMUL 5 P6G 4(C12 H26 O7) FORMUL 9 ACT 2(C2 H3 O2 1-) FORMUL 11 BEZ C7 H6 O2 FORMUL 12 HOH *232(H2 O) HELIX 1 AA1 GLY A 0 ALA A 30 1 7 HELIX 2 AA2 TRP A 45 ARG A 48 5 4 HELIX 3 AA3 LYS A 53 HIS A 59 1 7 HELIX 4 AA4 ASP A 62 GLY A 78 1 17 HELIX 5 AA5 THR A 122 ALA A 135 1 14 SHEET 1 AA1 6 ASN A 49 PRO A 52 0 SHEET 2 AA1 6 TRP A 34 ASN A 44 -1 N ASN A 44 O ASN A 49 SHEET 3 AA1 6 ASN A 80 PHE A 83 -1 O ILE A 81 N TRP A 34 SHEET 4 AA1 6 THR A 88 ILE A 93 -1 O THR A 90 N THR A 82 SHEET 5 AA1 6 GLY A 96 ASP A 105 -1 O GLY A 96 N ILE A 93 SHEET 6 AA1 6 THR A 110 LYS A 117 -1 O ASN A 114 N THR A 101 SHEET 1 AA2 5 ASN A 49 PRO A 52 0 SHEET 2 AA2 5 TRP A 34 ASN A 44 -1 N ASN A 44 O ASN A 49 SHEET 3 AA2 5 TYR A 155 ALA A 159 -1 O ALA A 159 N HIS A 35 SHEET 4 AA2 5 VAL A 144 ALA A 148 -1 N LEU A 145 O PHE A 158 SHEET 5 AA2 5 PHE A 137 GLY A 140 -1 N GLN A 139 O LEU A 146 LINK C ALA A 56 N MSE A 57 1555 1555 1.34 LINK C MSE A 57 N ALA A 58 1555 1555 1.35 LINK OD2 ASP A 105 CA CA A 203 1555 1555 2.19 LINK OD2 ASP A 108 CA CA A 203 1555 1555 2.51 LINK OD1 ASN A 112 CA CA A 202 1555 3644 2.36 LINK O ILE A 113 CA CA A 202 1555 3644 2.46 LINK OD1 ASN A 114 CA CA A 202 1555 3644 2.37 LINK O ASN A 133 CA CA A 201 1555 3644 2.35 LINK OD1 ASP A 164 CA CA A 201 1555 1555 2.53 LINK OD2 ASP A 164 CA CA A 201 1555 1555 2.45 LINK O ASP A 164 CA CA A 202 1555 1555 2.50 LINK OD1 ASP A 164 CA CA A 202 1555 1555 2.45 LINK CA CA A 201 O BHOH A 353 1555 1555 2.36 LINK CA CA A 201 O HOH A 381 1555 3654 2.46 LINK CA CA A 201 O AHOH A 391 1555 3654 2.33 LINK CA CA A 201 O BHOH A 391 1555 3654 2.56 LINK CA CA A 201 O AHOH A 412 1555 1555 2.69 LINK CA CA A 201 O HOH A 418 1555 3654 2.60 LINK CA CA A 201 O HOH A 483 1555 3654 2.38 LINK CA CA A 202 O HOH A 381 1555 3654 2.56 LINK CA CA A 202 O HOH A 418 1555 3654 2.61 LINK CA CA A 202 O HOH A 460 1555 1555 2.45 LINK CA CA A 203 O AHOH A 303 1555 4555 3.05 LINK CA CA A 203 O HOH A 307 1555 1555 1.99 LINK CA CA A 203 O HOH A 403 1555 1555 2.22 LINK CA CA A 203 O HOH A 413 1555 1555 2.24 SITE 1 AC1 8 ASN A 133 ASP A 164 HOH A 353 HOH A 381 SITE 2 AC1 8 HOH A 391 HOH A 412 HOH A 418 HOH A 483 SITE 1 AC2 7 ASN A 112 ILE A 113 ASN A 114 ASP A 164 SITE 2 AC2 7 HOH A 381 HOH A 418 HOH A 460 SITE 1 AC3 6 ASP A 105 ASP A 108 HOH A 303 HOH A 307 SITE 2 AC3 6 HOH A 403 HOH A 413 SITE 1 AC4 13 TRP A 45 ASP A 46 GLY A 106 LYS A 107 SITE 2 AC4 13 ASP A 108 ARG A 109 PHE A 137 TYR A 138 SITE 3 AC4 13 GLN A 139 P6G A 205 HOH A 308 HOH A 375 SITE 4 AC4 13 HOH A 385 SITE 1 AC5 6 SER A 31 GLY A 32 THR A 33 ASP A 46 SITE 2 AC5 6 P6G A 204 HOH A 434 SITE 1 AC6 12 GLN A 103 THR A 110 VAL A 111 ASN A 112 SITE 2 AC6 12 ILE A 136 GLU A 150 ASP A 164 HOH A 449 SITE 3 AC6 12 HOH A 457 HOH A 492 HOH A 497 HOH A 532 SITE 1 AC7 11 ALA A 56 HIS A 59 THR A 88 GLU A 99 SITE 2 AC7 11 GLY A 100 ILE A 136 HOH A 335 HOH A 363 SITE 3 AC7 11 HOH A 382 HOH A 455 HOH A 470 SITE 1 AC8 7 LYS A 42 ASP A 74 LYS A 162 HOH A 340 SITE 2 AC8 7 HOH A 426 HOH A 458 HOH A 522 SITE 1 AC9 6 ASP A 74 HIS A 77 ASP A 164 HOH A 301 SITE 2 AC9 6 HOH A 416 HOH A 435 SITE 1 AD1 11 PHE A 115 THR A 118 ASN A 133 VAL A 144 SITE 2 AD1 11 ALA A 159 ASN A 161 GLN A 163 HOH A 327 SITE 3 AD1 11 HOH A 353 HOH A 392 HOH A 412 CRYST1 31.747 55.486 76.176 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031499 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018023 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013127 0.00000