HEADER OXIDOREDUCTASE 24-APR-15 4ZGW TITLE SHORT-CHAIN DEHYDROGENASE/REDUCTASE FROM SERRATIA MARCESCENS BCRC TITLE 2 10948 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT-CHAIN DEHYDROGENASE/REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.100; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 STRAIN: BCRC 10948; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SHORT-CHAIN DEHYDROGENASE/REDUCTASE SERRATIA MARCESCENS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.-C.WANG REVDAT 2 08-NOV-23 4ZGW 1 REMARK REVDAT 1 27-APR-16 4ZGW 0 JRNL AUTH W.H.HSU JRNL TITL STEREOSELECTIVE SYNTHESIS OF (R)-PHENYLEPHRINE USING JRNL TITL 2 RECOMBINANT ESCHERICHIA COLI CELLS EXPRESSING A NOVEL JRNL TITL 3 SHORT-CHAIN DEHYDROGENASE/REDUCTASE GENE FROM SERRATIA JRNL TITL 4 MARCESCENS BCRC 10948 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 65062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3392 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3986 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 217 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3318 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.040 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.025 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3400 ; 0.035 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4601 ; 2.919 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 6.965 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;33.303 ;23.769 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 519 ;14.105 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.674 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 537 ; 0.314 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2570 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2305 ; 1.788 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3621 ; 2.977 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1095 ; 4.455 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 980 ; 7.153 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : OTHER REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69956 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : 0.07600 REMARK 200 FOR THE DATA SET : 36.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3V2G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 CACODYLATE, 25% W/V PEG 2000 MME, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.52850 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.93550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.93550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.76425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.93550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.93550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.29275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.93550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.93550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.76425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.93550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.93550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.29275 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.52850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 431 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 424 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -37 REMARK 465 HIS A -36 REMARK 465 HIS A -35 REMARK 465 HIS A -34 REMARK 465 HIS A -33 REMARK 465 HIS A -32 REMARK 465 HIS A -31 REMARK 465 SER A -30 REMARK 465 SER A -29 REMARK 465 GLY A -28 REMARK 465 LEU A -27 REMARK 465 VAL A -26 REMARK 465 PRO A -25 REMARK 465 ARG A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 MET A -20 REMARK 465 LYS A -19 REMARK 465 GLU A -18 REMARK 465 THR A -17 REMARK 465 ALA A -16 REMARK 465 ALA A -15 REMARK 465 ALA A -14 REMARK 465 LYS A -13 REMARK 465 PHE A -12 REMARK 465 GLU A -11 REMARK 465 ARG A -10 REMARK 465 GLN A -9 REMARK 465 HIS A -8 REMARK 465 MET A -7 REMARK 465 ASP A -6 REMARK 465 SER A -5 REMARK 465 PRO A -4 REMARK 465 ASP A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 ALA A 4 REMARK 465 MET B -37 REMARK 465 HIS B -36 REMARK 465 HIS B -35 REMARK 465 HIS B -34 REMARK 465 HIS B -33 REMARK 465 HIS B -32 REMARK 465 HIS B -31 REMARK 465 SER B -30 REMARK 465 SER B -29 REMARK 465 GLY B -28 REMARK 465 LEU B -27 REMARK 465 VAL B -26 REMARK 465 PRO B -25 REMARK 465 ARG B -24 REMARK 465 GLY B -23 REMARK 465 SER B -22 REMARK 465 GLY B -21 REMARK 465 MET B -20 REMARK 465 LYS B -19 REMARK 465 GLU B -18 REMARK 465 THR B -17 REMARK 465 ALA B -16 REMARK 465 ALA B -15 REMARK 465 ALA B -14 REMARK 465 LYS B -13 REMARK 465 PHE B -12 REMARK 465 GLU B -11 REMARK 465 ARG B -10 REMARK 465 GLN B -9 REMARK 465 HIS B -8 REMARK 465 MET B -7 REMARK 465 ASP B -6 REMARK 465 SER B -5 REMARK 465 PRO B -4 REMARK 465 ASP B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 THR B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 41 REMARK 465 ALA B 42 REMARK 465 SER B 43 REMARK 465 ALA B 44 REMARK 465 ASP B 45 REMARK 465 ARG B 46 REMARK 465 ALA B 47 REMARK 465 GLU B 48 REMARK 465 ALA B 49 REMARK 465 VAL B 50 REMARK 465 ASP B 192 REMARK 465 THR B 193 REMARK 465 GLU B 194 REMARK 465 MET B 195 REMARK 465 ASN B 196 REMARK 465 PRO B 197 REMARK 465 ASP B 198 REMARK 465 ALA B 199 REMARK 465 GLY B 200 REMARK 465 GLU B 201 REMARK 465 PHE B 202 REMARK 465 ALA B 203 REMARK 465 ASP B 204 REMARK 465 GLN B 205 REMARK 465 LEU B 206 REMARK 465 LYS B 207 REMARK 465 GLN B 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 305 O HOH A 417 2.15 REMARK 500 O HOH B 442 O HOH B 448 2.15 REMARK 500 O HOH B 344 O HOH B 356 2.18 REMARK 500 O HOH A 369 O HOH A 422 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 128 CD GLU A 128 OE1 -0.066 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN B 146 O - C - N ANGL. DEV. = -11.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 42 -53.27 -121.13 REMARK 500 VAL A 119 -66.59 -121.53 REMARK 500 ASP A 244 18.97 -140.51 REMARK 500 VAL B 119 -66.43 -121.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU A 194 -11.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 449 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B 450 DISTANCE = 6.93 ANGSTROMS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE N-TERMINAL AMINO ACIDS 1-39 ARE SEGEMENTS ON THE PET30A PLASMID. DBREF 4ZGW A -37 249 PDB 4ZGW 4ZGW -37 249 DBREF 4ZGW B -37 249 PDB 4ZGW 4ZGW -37 249 SEQRES 1 A 287 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 287 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 A 287 GLU ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR MET SEQRES 4 A 287 THR THR ALA HIS PRO LEU GLN GLY LYS VAL ALA PHE VAL SEQRES 5 A 287 GLN GLY GLY SER ARG GLY ILE GLY ALA ALA ILE VAL LYS SEQRES 6 A 287 ARG LEU ALA SER GLU GLY ALA ALA VAL ALA PHE THR TYR SEQRES 7 A 287 ALA ALA SER ALA ASP ARG ALA GLU ALA VAL ALA SER ALA SEQRES 8 A 287 VAL THR THR ALA GLY GLY LYS VAL LEU ALA ILE LYS ALA SEQRES 9 A 287 ASP SER ALA ASP ALA ALA ALA LEU GLN GLN ALA VAL ARG SEQRES 10 A 287 GLN ALA VAL SER HIS PHE GLY ASN LEU ASP ILE LEU VAL SEQRES 11 A 287 ASN ASN ALA GLY VAL PHE THR LEU GLY GLY THR GLU GLU SEQRES 12 A 287 LEU ALA LEU ASP ASP LEU ASP ARG MET LEU ALA VAL ASN SEQRES 13 A 287 VAL ARG SER VAL PHE VAL ALA SER GLN GLU ALA ALA ARG SEQRES 14 A 287 HIS MET ASN ASP GLY GLY ARG ILE ILE HIS ILE GLY SER SEQRES 15 A 287 THR ASN ALA GLU ARG VAL PRO PHE GLY GLY ALA ALA VAL SEQRES 16 A 287 TYR ALA MET SER LYS SER ALA LEU VAL GLY LEU THR LYS SEQRES 17 A 287 GLY MET ALA ARG ASP LEU GLY PRO ARG SER ILE THR VAL SEQRES 18 A 287 ASN ASN VAL GLN PRO GLY PRO VAL ASP THR GLU MET ASN SEQRES 19 A 287 PRO ASP ALA GLY GLU PHE ALA ASP GLN LEU LYS GLN LEU SEQRES 20 A 287 MET ALA ILE GLY ARG TYR GLY LYS ASP GLU GLU ILE ALA SEQRES 21 A 287 GLY PHE VAL ALA TYR LEU ALA GLY PRO GLN ALA GLY TYR SEQRES 22 A 287 ILE THR GLY ALA SER LEU SER ILE ASP GLY GLY PHE SER SEQRES 23 A 287 ALA SEQRES 1 B 287 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 B 287 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 B 287 GLU ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR MET SEQRES 4 B 287 THR THR ALA HIS PRO LEU GLN GLY LYS VAL ALA PHE VAL SEQRES 5 B 287 GLN GLY GLY SER ARG GLY ILE GLY ALA ALA ILE VAL LYS SEQRES 6 B 287 ARG LEU ALA SER GLU GLY ALA ALA VAL ALA PHE THR TYR SEQRES 7 B 287 ALA ALA SER ALA ASP ARG ALA GLU ALA VAL ALA SER ALA SEQRES 8 B 287 VAL THR THR ALA GLY GLY LYS VAL LEU ALA ILE LYS ALA SEQRES 9 B 287 ASP SER ALA ASP ALA ALA ALA LEU GLN GLN ALA VAL ARG SEQRES 10 B 287 GLN ALA VAL SER HIS PHE GLY ASN LEU ASP ILE LEU VAL SEQRES 11 B 287 ASN ASN ALA GLY VAL PHE THR LEU GLY GLY THR GLU GLU SEQRES 12 B 287 LEU ALA LEU ASP ASP LEU ASP ARG MET LEU ALA VAL ASN SEQRES 13 B 287 VAL ARG SER VAL PHE VAL ALA SER GLN GLU ALA ALA ARG SEQRES 14 B 287 HIS MET ASN ASP GLY GLY ARG ILE ILE HIS ILE GLY SER SEQRES 15 B 287 THR ASN ALA GLU ARG VAL PRO PHE GLY GLY ALA ALA VAL SEQRES 16 B 287 TYR ALA MET SER LYS SER ALA LEU VAL GLY LEU THR LYS SEQRES 17 B 287 GLY MET ALA ARG ASP LEU GLY PRO ARG SER ILE THR VAL SEQRES 18 B 287 ASN ASN VAL GLN PRO GLY PRO VAL ASP THR GLU MET ASN SEQRES 19 B 287 PRO ASP ALA GLY GLU PHE ALA ASP GLN LEU LYS GLN LEU SEQRES 20 B 287 MET ALA ILE GLY ARG TYR GLY LYS ASP GLU GLU ILE ALA SEQRES 21 B 287 GLY PHE VAL ALA TYR LEU ALA GLY PRO GLN ALA GLY TYR SEQRES 22 B 287 ILE THR GLY ALA SER LEU SER ILE ASP GLY GLY PHE SER SEQRES 23 B 287 ALA FORMUL 3 HOH *298(H2 O) HELIX 1 AA1 ARG A 19 GLU A 32 1 14 HELIX 2 AA2 SER A 43 ALA A 57 1 15 HELIX 3 AA3 ASP A 70 GLY A 86 1 17 HELIX 4 AA4 ALA A 107 VAL A 119 1 13 HELIX 5 AA5 VAL A 119 HIS A 132 1 14 HELIX 6 AA6 SER A 144 GLU A 148 5 5 HELIX 7 AA7 ALA A 155 GLY A 177 1 23 HELIX 8 AA8 PRO A 178 SER A 180 5 3 HELIX 9 AA9 GLY A 200 GLN A 208 1 9 HELIX 10 AB1 LYS A 217 ALA A 229 1 13 HELIX 11 AB2 ARG B 19 GLU B 32 1 14 HELIX 12 AB3 ASP B 70 GLY B 86 1 17 HELIX 13 AB4 ALA B 107 VAL B 119 1 13 HELIX 14 AB5 VAL B 119 HIS B 132 1 14 HELIX 15 AB6 SER B 144 GLU B 148 5 5 HELIX 16 AB7 ALA B 155 GLY B 177 1 23 HELIX 17 AB8 PRO B 178 SER B 180 5 3 HELIX 18 AB9 LYS B 217 GLY B 230 1 14 SHEET 1 AA1 7 VAL A 61 LYS A 65 0 SHEET 2 AA1 7 ALA A 35 TYR A 40 1 N PHE A 38 O ILE A 64 SHEET 3 AA1 7 VAL A 11 GLN A 15 1 N ALA A 12 O ALA A 35 SHEET 4 AA1 7 LEU A 88 ASN A 93 1 O VAL A 92 N GLN A 15 SHEET 5 AA1 7 MET A 133 ILE A 142 1 O ASN A 134 N LEU A 88 SHEET 6 AA1 7 THR A 182 PRO A 188 1 O ASN A 184 N HIS A 141 SHEET 7 AA1 7 SER A 240 ILE A 243 1 O LEU A 241 N GLN A 187 SHEET 1 AA2 8 SER B 52 VAL B 54 0 SHEET 2 AA2 8 VAL B 61 LYS B 65 -1 O LYS B 65 N SER B 52 SHEET 3 AA2 8 ALA B 35 TYR B 40 1 N PHE B 38 O ILE B 64 SHEET 4 AA2 8 VAL B 11 GLN B 15 1 N ALA B 12 O ALA B 35 SHEET 5 AA2 8 LEU B 88 ASN B 93 1 O ASP B 89 N VAL B 11 SHEET 6 AA2 8 MET B 133 ILE B 142 1 O ILE B 140 N LEU B 91 SHEET 7 AA2 8 THR B 182 PRO B 188 1 O ASN B 184 N HIS B 141 SHEET 8 AA2 8 SER B 240 ILE B 243 1 O LEU B 241 N GLN B 187 CRYST1 83.871 83.871 115.057 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011923 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011923 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008691 0.00000