HEADER LIGASE 28-APR-15 4ZIY TITLE STRUCTURE OF UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6- TITLE 2 DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE FROM ACINETOBACTER TITLE 3 BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.2.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII AB5075; SOURCE 3 ORGANISM_TAXID: 1116234; SOURCE 4 STRAIN: AB5075-UW; SOURCE 5 GENE: MURF, A591_A0258; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, ACINETOBACTER BAUMANNII, UDP-N-ACETYLMURAMOYLALANYL-D- KEYWDS 2 GLUTAMYL-2, 6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE, STRUCTURAL KEYWDS 3 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 4 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-MAR-24 4ZIY 1 REMARK REVDAT 2 22-NOV-17 4ZIY 1 SOURCE REMARK REVDAT 1 20-MAY-15 4ZIY 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,M.C.CLIFTON,D.D.LORIMER,T.E.EDWARDS JRNL TITL STRUCTURE OF JRNL TITL 2 UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2, JRNL TITL 3 6-DIAMINOPIMELATE--D-ALANYL-D-ALANYL LIGASE FROM JRNL TITL 4 ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2006: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 2486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6896 - 4.8453 0.99 2726 140 0.1853 0.2008 REMARK 3 2 4.8453 - 3.8471 1.00 2629 151 0.1388 0.1423 REMARK 3 3 3.8471 - 3.3612 1.00 2585 136 0.1560 0.1931 REMARK 3 4 3.3612 - 3.0540 1.00 2562 152 0.1773 0.2275 REMARK 3 5 3.0540 - 2.8352 1.00 2589 131 0.1824 0.2141 REMARK 3 6 2.8352 - 2.6681 1.00 2559 142 0.1782 0.2123 REMARK 3 7 2.6681 - 2.5345 1.00 2489 170 0.1819 0.2046 REMARK 3 8 2.5345 - 2.4242 1.00 2551 156 0.1761 0.1988 REMARK 3 9 2.4242 - 2.3309 1.00 2551 109 0.1726 0.2232 REMARK 3 10 2.3309 - 2.2504 1.00 2570 135 0.1753 0.2215 REMARK 3 11 2.2504 - 2.1801 1.00 2550 126 0.1776 0.2215 REMARK 3 12 2.1801 - 2.1178 1.00 2504 150 0.1790 0.2373 REMARK 3 13 2.1178 - 2.0620 1.00 2529 134 0.1862 0.2196 REMARK 3 14 2.0620 - 2.0117 1.00 2525 134 0.1867 0.2191 REMARK 3 15 2.0117 - 1.9660 1.00 2532 128 0.1964 0.2213 REMARK 3 16 1.9660 - 1.9242 1.00 2540 138 0.2119 0.2819 REMARK 3 17 1.9242 - 1.8857 1.00 2517 135 0.2300 0.2666 REMARK 3 18 1.8857 - 1.8501 1.00 2547 119 0.2601 0.2649 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3490 REMARK 3 ANGLE : 0.966 4747 REMARK 3 CHIRALITY : 0.051 549 REMARK 3 PLANARITY : 0.005 632 REMARK 3 DIHEDRAL : 13.119 1264 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5237 20.5426 27.3327 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.1045 REMARK 3 T33: 0.1936 T12: -0.0190 REMARK 3 T13: -0.0167 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 6.7695 L22: 2.3555 REMARK 3 L33: 4.5460 L12: 0.2123 REMARK 3 L13: -0.2494 L23: 0.3513 REMARK 3 S TENSOR REMARK 3 S11: 0.0812 S12: -0.1209 S13: -0.2703 REMARK 3 S21: -0.0910 S22: -0.0868 S23: -0.1505 REMARK 3 S31: 0.1560 S32: -0.0115 S33: -0.0034 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 81 THROUGH 277 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3932 41.9056 18.1102 REMARK 3 T TENSOR REMARK 3 T11: 0.1576 T22: 0.1820 REMARK 3 T33: 0.1643 T12: 0.0293 REMARK 3 T13: 0.0148 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 1.2438 L22: 1.2256 REMARK 3 L33: 1.8486 L12: 0.7479 REMARK 3 L13: -0.7564 L23: -0.9337 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: -0.0094 S13: 0.0631 REMARK 3 S21: 0.0330 S22: 0.0263 S23: 0.0306 REMARK 3 S31: -0.0460 S32: -0.1214 S33: -0.0851 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 278 THROUGH 346 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8083 47.0948 0.6461 REMARK 3 T TENSOR REMARK 3 T11: 0.2359 T22: 0.4254 REMARK 3 T33: 0.2252 T12: -0.0301 REMARK 3 T13: 0.0193 T23: 0.0803 REMARK 3 L TENSOR REMARK 3 L11: 1.9087 L22: 1.3294 REMARK 3 L33: 2.5753 L12: -0.0757 REMARK 3 L13: 0.2028 L23: -0.6087 REMARK 3 S TENSOR REMARK 3 S11: 0.0672 S12: 0.2596 S13: 0.1229 REMARK 3 S21: -0.0407 S22: 0.2112 S23: 0.3088 REMARK 3 S31: 0.0901 S32: -0.7568 S33: -0.2089 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 347 THROUGH 463 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.5843 56.9846 1.7798 REMARK 3 T TENSOR REMARK 3 T11: 0.6829 T22: 1.3863 REMARK 3 T33: 0.8431 T12: 0.0325 REMARK 3 T13: 0.2423 T23: 0.1159 REMARK 3 L TENSOR REMARK 3 L11: 3.3023 L22: 2.4609 REMARK 3 L33: 3.4979 L12: -0.7932 REMARK 3 L13: -1.1207 L23: 0.6100 REMARK 3 S TENSOR REMARK 3 S11: 0.1587 S12: -0.2861 S13: 0.6287 REMARK 3 S21: 0.3984 S22: -0.1075 S23: 0.7907 REMARK 3 S31: -0.3147 S32: -1.4465 S33: -0.0550 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 464 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6319 41.6333 -7.1031 REMARK 3 T TENSOR REMARK 3 T11: 0.9090 T22: 1.3327 REMARK 3 T33: 1.6242 T12: -0.4247 REMARK 3 T13: 0.0323 T23: -0.3229 REMARK 3 L TENSOR REMARK 3 L11: 2.0000 L22: 2.0000 REMARK 3 L33: 1.9999 L12: -4.3274 REMARK 3 L13: 2.0000 L23: -2.2880 REMARK 3 S TENSOR REMARK 3 S11: 0.0916 S12: 0.1235 S13: -0.0215 REMARK 3 S21: 0.9164 S22: -0.0503 S23: -0.6939 REMARK 3 S31: 0.8438 S32: 0.7586 S33: -0.0367 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZIY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-15; 17-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N; Y REMARK 200 RADIATION SOURCE : ROTATING ANODE; APS REMARK 200 BEAMLINE : NULL; 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418; 0.97856 REMARK 200 MONOCHROMATOR : NULL; [111] REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+; RAYONIX MX REMARK 200 -300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48617 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 SCREEN G4: 20% PEG 3350, 200MM REMARK 280 NA-TARTRATE; ACBAC.00137.C.B1.PS02364 AT 22.7MG/ML WITH 3MM REMARK 280 MGCL2 AND AMPPNP; CRYO: 20% EG + COMPOUNDS; TRAY: 262682G4; PUCK REMARK 280 RRN3-1; IODIDE DATA SET WAS PREPARED BY SOAKING A CRYSTAL FROM REMARK 280 THE SAME WELL IN RESERVOIR WITH 10%EG AND 250MM NAI, AND 20% EG REMARK 280 AND 500MM NAI, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.34000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.67000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 43.67000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.34000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 HIS A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 LEU A 203 REMARK 465 GLY A 204 REMARK 465 GLU A 205 REMARK 465 GLY A 375 REMARK 465 ASP A 376 REMARK 465 SER A 377 REMARK 465 ALA A 411 REMARK 465 GLY A 412 REMARK 465 LEU A 413 REMARK 465 HIS A 414 REMARK 465 SER A 415 REMARK 465 GLN A 439 REMARK 465 PRO A 440 REMARK 465 LEU A 466 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 21 CG CD OE1 NE2 REMARK 470 GLU A 87 CG CD OE1 OE2 REMARK 470 HIS A 202 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 206 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLN A 332 CG CD OE1 NE2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 LEU A 374 CG CD1 CD2 REMARK 470 SER A 378 OG REMARK 470 GLN A 380 CG CD OE1 NE2 REMARK 470 LEU A 385 CG CD1 CD2 REMARK 470 ARG A 387 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 GLN A 402 CG CD OE1 NE2 REMARK 470 SER A 405 OG REMARK 470 GLU A 409 CG CD OE1 OE2 REMARK 470 LYS A 417 CG CD CE NZ REMARK 470 LYS A 419 CG CD CE NZ REMARK 470 GLN A 422 CG CD OE1 NE2 REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 GLN A 436 CG CD OE1 NE2 REMARK 470 THR A 437 OG1 CG2 REMARK 470 GLN A 441 CG CD OE1 NE2 REMARK 470 ASP A 461 CG OD1 OD2 REMARK 470 GLU A 464 CG CD OE1 OE2 REMARK 470 LYS A 465 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 151 -163.30 -113.62 REMARK 500 GLU A 263 54.60 37.43 REMARK 500 PRO A 287 46.31 -83.32 REMARK 500 THR A 334 129.40 -29.03 REMARK 500 PRO A 335 50.17 -94.48 REMARK 500 PRO A 393 36.31 -77.36 REMARK 500 HIS A 454 66.69 32.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 914 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 126 OG1 REMARK 620 2 GLU A 172 OE2 98.3 REMARK 620 3 ANP A 501 O2G 154.6 106.7 REMARK 620 4 ANP A 501 O1B 79.3 111.4 87.3 REMARK 620 5 HOH A 818 O 88.6 85.7 97.7 160.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-ACBAC.00137.C RELATED DB: TARGETTRACK DBREF1 4ZIY A 1 466 UNP A0A0A2TK68_ACIBA DBREF2 4ZIY A A0A0A2TK68 1 466 SEQADV 4ZIY MET A -7 UNP A0A0A2TK6 EXPRESSION TAG SEQADV 4ZIY ALA A -6 UNP A0A0A2TK6 EXPRESSION TAG SEQADV 4ZIY HIS A -5 UNP A0A0A2TK6 EXPRESSION TAG SEQADV 4ZIY HIS A -4 UNP A0A0A2TK6 EXPRESSION TAG SEQADV 4ZIY HIS A -3 UNP A0A0A2TK6 EXPRESSION TAG SEQADV 4ZIY HIS A -2 UNP A0A0A2TK6 EXPRESSION TAG SEQADV 4ZIY HIS A -1 UNP A0A0A2TK6 EXPRESSION TAG SEQADV 4ZIY HIS A 0 UNP A0A0A2TK6 EXPRESSION TAG SEQRES 1 A 474 MET ALA HIS HIS HIS HIS HIS HIS MET HIS THR SER THR SEQRES 2 A 474 THR SER THR VAL PRO LEU GLU PRO TRP THR ALA GLN GLN SEQRES 3 A 474 LEU GLN GLN ALA THR GLN GLY TYR TRP HIS LYS ASP GLN SEQRES 4 A 474 ILE PRO GLN THR GLU ILE LYS ARG ILE LEU THR ASP SER SEQRES 5 A 474 ARG HIS ALA GLU SER GLY ASP ALA PHE LEU ALA LEU LYS SEQRES 6 A 474 GLY GLU ARG PHE ASP ALA HIS ASN PHE VAL ALA GLN VAL SEQRES 7 A 474 VAL ALA ASN GLY CYS GLN VAL ALA ILE VAL GLU ARG PRO SEQRES 8 A 474 ILE ASP ALA GLU ILE ALA GLN LEU VAL VAL ALA ASP THR SEQRES 9 A 474 ARG LEU ALA LEU GLY GLN LEU GLY ALA TYR ARG ARG GLU SEQRES 10 A 474 GLN ASN ALA GLN LEU LYS VAL ILE ALA LEU THR GLY SER SEQRES 11 A 474 SER GLY LYS THR THR THR LYS GLU MET LEU GLY SER ILE SEQRES 12 A 474 LEU SER ARG LEU ALA PRO THR LEU ILE THR ARG GLY ASN SEQRES 13 A 474 LEU ASN ASN ASP LEU GLY VAL PRO MET MET LEU LEU GLU SEQRES 14 A 474 LEU ARG LYS GLU HIS GLN TYR ALA VAL MET GLU LEU GLY SEQRES 15 A 474 ALA ASN HIS GLN GLY GLU ILE ASP TYR THR SER LYS ILE SEQRES 16 A 474 VAL GLN PRO HIS VAL ALA GLY ILE LEU ASN ILE GLY THR SEQRES 17 A 474 ALA HIS LEU GLY GLU PHE GLY GLY ARG ASP GLY ILE CYS SEQRES 18 A 474 ARG ALA LYS SER GLU ILE TYR ARG HIS ILE LEU PRO GLN SEQRES 19 A 474 GLY VAL ALA ILE VAL PRO GLN GLN ASP ASP PHE THR ALA SEQRES 20 A 474 GLU ILE ARG GLU ALA ALA LYS SER HIS GLN ILE MET SER SEQRES 21 A 474 PHE GLY ALA GLY GLY ASP VAL PHE ALA THR GLU ILE GLU SEQRES 22 A 474 LEU LEU PRO GLN SER ALA ASN PHE GLN LEU HIS THR PRO SEQRES 23 A 474 GLN GLY SER SER PHE VAL ARG LEU PRO PHE ALA GLY GLU SEQRES 24 A 474 HIS ASN VAL GLN ASN ALA THR ALA ALA VAL ALA PHE ALA SEQRES 25 A 474 LEU ALA LEU GLY VAL SER LEU GLU ASP ILE VAL LYS GLY SEQRES 26 A 474 LEU GLU GLN ALA GLN GLY ALA LYS GLY ARG LEU ASN PHE SEQRES 27 A 474 ILE GLN LYS THR PRO HIS LEU PHE ILE ASP ASP THR TYR SEQRES 28 A 474 ASN ALA ASN PRO THR SER MET ARG ALA ALA ALA GLN VAL SEQRES 29 A 474 LEU LEU GLN GLN ASN GLY ILE LYS VAL MET VAL MET GLY SEQRES 30 A 474 ASP ILE GLY GLU LEU GLY ASP SER SER TRP GLN GLU HIS SEQRES 31 A 474 HIS ASP LEU GLY ARG ASP LEU ALA GLU LEU PRO LEU ASP SEQRES 32 A 474 HIS ILE VAL ALA VAL GLY GLN PHE ALA SER ALA ALA LEU SEQRES 33 A 474 GLU GLY ALA GLY LEU HIS SER THR LYS LEU LYS ALA PHE SEQRES 34 A 474 GLN THR GLN ALA GLU ALA LEU PRO PHE LEU ILE ASN LEU SEQRES 35 A 474 ILE GLN THR HIS GLN PRO GLN SER MET SER PHE LEU PHE SEQRES 36 A 474 LYS GLY SER ARG PHE THR HIS MET GLU THR LEU MET ALA SEQRES 37 A 474 ASP LEU MET GLU LYS LEU HET ANP A 501 31 HET MG A 502 1 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG MG 2+ FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 HOH *314(H2 O) HELIX 1 AA1 THR A 15 GLN A 24 1 10 HELIX 2 AA2 LYS A 29 GLN A 31 5 3 HELIX 3 AA3 PHE A 66 ASN A 73 1 8 HELIX 4 AA4 ASP A 95 ASN A 111 1 17 HELIX 5 AA5 GLY A 124 ARG A 138 1 15 HELIX 6 AA6 LEU A 153 LEU A 160 1 8 HELIX 7 AA7 GLY A 179 GLN A 189 1 11 HELIX 8 AA8 GLY A 207 SER A 217 1 11 HELIX 9 AA9 GLU A 218 ARG A 221 5 4 HELIX 10 AB1 PHE A 237 ALA A 245 1 9 HELIX 11 AB2 GLY A 290 LEU A 307 1 18 HELIX 12 AB3 SER A 310 GLN A 320 1 11 HELIX 13 AB4 ASN A 346 LEU A 358 1 13 HELIX 14 AB5 TRP A 379 LEU A 392 1 14 HELIX 15 AB6 PHE A 403 GLU A 409 1 7 HELIX 16 AB7 GLU A 426 HIS A 438 1 13 HELIX 17 AB8 SER A 450 THR A 453 5 4 HELIX 18 AB9 HIS A 454 LYS A 465 1 12 SHEET 1 AA1 5 TYR A 26 TRP A 27 0 SHEET 2 AA1 5 ALA A 89 VAL A 92 -1 O VAL A 92 N TYR A 26 SHEET 3 AA1 5 VAL A 77 VAL A 80 1 N ALA A 78 O LEU A 91 SHEET 4 AA1 5 ASP A 51 LEU A 54 1 N PHE A 53 O ILE A 79 SHEET 5 AA1 5 ARG A 39 LEU A 41 1 N ARG A 39 O ALA A 52 SHEET 1 AA2 2 LYS A 57 GLY A 58 0 SHEET 2 AA2 2 PHE A 61 ASP A 62 -1 O PHE A 61 N GLY A 58 SHEET 1 AA3 6 THR A 142 ILE A 144 0 SHEET 2 AA3 6 TYR A 168 GLU A 172 1 O VAL A 170 N LEU A 143 SHEET 3 AA3 6 LYS A 115 THR A 120 1 N ILE A 117 O ALA A 169 SHEET 4 AA3 6 VAL A 192 ILE A 195 1 O VAL A 192 N ALA A 118 SHEET 5 AA3 6 VAL A 228 PRO A 232 1 O ILE A 230 N ALA A 193 SHEET 6 AA3 6 GLN A 249 PHE A 253 1 O GLN A 249 N ALA A 229 SHEET 1 AA4 3 PHE A 260 LEU A 266 0 SHEET 2 AA4 3 ALA A 271 THR A 277 -1 O ASN A 272 N GLU A 265 SHEET 3 AA4 3 GLY A 280 LEU A 286 -1 O SER A 282 N LEU A 275 SHEET 1 AA5 6 ASN A 329 GLN A 332 0 SHEET 2 AA5 6 LEU A 337 ASP A 340 -1 O ASP A 340 N ASN A 329 SHEET 3 AA5 6 MET A 443 LYS A 448 1 O PHE A 445 N ILE A 339 SHEET 4 AA5 6 ILE A 363 MET A 368 1 N ILE A 363 O SER A 444 SHEET 5 AA5 6 HIS A 396 VAL A 400 1 O VAL A 400 N MET A 368 SHEET 6 AA5 6 LEU A 418 PHE A 421 1 O PHE A 421 N ALA A 399 LINK OG1 THR A 126 MG MG A 502 1555 1555 2.36 LINK OE2 GLU A 172 MG MG A 502 1555 1555 2.17 LINK O2G ANP A 501 MG MG A 502 1555 1555 1.99 LINK O1B ANP A 501 MG MG A 502 1555 1555 2.23 LINK MG MG A 502 O HOH A 818 1555 1555 2.26 CISPEP 1 THR A 334 PRO A 335 0 -1.17 SITE 1 AC1 19 SER A 122 SER A 123 GLY A 124 LYS A 125 SITE 2 AC1 19 THR A 126 THR A 127 GLU A 172 HIS A 292 SITE 3 AC1 19 ASN A 296 ARG A 327 ASP A 341 TYR A 343 SITE 4 AC1 19 ASN A 344 SER A 349 MG A 502 HOH A 603 SITE 5 AC1 19 HOH A 675 HOH A 711 HOH A 788 SITE 1 AC2 4 THR A 126 GLU A 172 ANP A 501 HOH A 818 SITE 1 AC3 5 PRO A 13 GLN A 18 ARG A 107 GLN A 110 SITE 2 AC3 5 HOH A 615 SITE 1 AC4 6 ASP A 152 PHE A 283 HOH A 613 HOH A 638 SITE 2 AC4 6 HOH A 794 HOH A 804 SITE 1 AC5 5 TYR A 26 VAL A 92 VAL A 93 ALA A 94 SITE 2 AC5 5 HOH A 703 CRYST1 86.090 86.090 131.010 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011616 0.006706 0.000000 0.00000 SCALE2 0.000000 0.013413 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007633 0.00000