HEADER HYDROLASE 28-APR-15 4ZJ1 TITLE CRYSTAL STRUCTURE OF P-ACRYLAMIDO-PHENYLALANINE MODIFIED TEM1 BETA- TITLE 2 LACTAMASE FROM ESCHERICHIA COLI : V216ACRF MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE TEM; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IRT-4,PENICILLINASE,TEM-1,TEM-16/CAZ-7,TEM-2,TEM-24/CAZ-6, COMPND 5 TEM-3,TEM-4,TEM-5,TEM-6,TEM-8/CAZ-2; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: BLA, BLAT-3, BLAT-4, BLAT-5, BLAT-6; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NONCANONICAL AMINO ACID, BETA-LACTAMASE, PROTEIN EVOLUTION, KEYWDS 2 EVOLUTIONARY ADVANTAGE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.XIAO,F.NASERTORABI,S.CHOI,G.W.HAN,S.A.REED,R.C.STEVENS,P.G.SCHULTZ REVDAT 5 15-NOV-23 4ZJ1 1 REMARK REVDAT 4 27-SEP-23 4ZJ1 1 REMARK REVDAT 3 20-JUL-16 4ZJ1 1 REMARK REVDAT 2 17-JUN-15 4ZJ1 1 JRNL REVDAT 1 20-MAY-15 4ZJ1 0 JRNL AUTH H.XIAO,F.NASERTORABI,S.H.CHOI,G.W.HAN,S.A.REED,R.C.STEVENS, JRNL AUTH 2 P.G.SCHULTZ JRNL TITL EXPLORING THE POTENTIAL IMPACT OF AN EXPANDED GENETIC CODE JRNL TITL 2 ON PROTEIN FUNCTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 6961 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26038548 JRNL DOI 10.1073/PNAS.1507741112 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 39324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2082 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2848 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2050 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 468 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.26000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.077 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2291 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2214 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3116 ; 1.851 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5110 ; 1.040 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 298 ; 5.678 ; 5.034 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;39.678 ;23.939 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 401 ;11.673 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.991 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.252 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2651 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 508 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1154 ; 1.396 ; 2.279 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1153 ; 1.354 ; 2.270 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1467 ; 2.084 ; 4.263 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1468 ; 2.090 ; 4.274 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1137 ; 2.675 ; 2.920 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1137 ; 2.674 ; 2.920 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1650 ; 4.020 ; 5.184 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3177 ; 7.420 ;17.436 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3178 ; 7.419 ;17.441 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 26 A 293 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8798 11.2073 -15.4523 REMARK 3 T TENSOR REMARK 3 T11: 0.0153 T22: 0.0074 REMARK 3 T33: 0.0043 T12: 0.0038 REMARK 3 T13: 0.0035 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.0811 L22: 0.1905 REMARK 3 L33: 0.2169 L12: 0.0004 REMARK 3 L13: -0.0408 L23: 0.1494 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: 0.0067 S13: -0.0066 REMARK 3 S21: -0.0162 S22: -0.0140 S23: -0.0047 REMARK 3 S31: -0.0155 S32: -0.0058 S33: 0.0033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZJ1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-15. REMARK 100 THE DEPOSITION ID IS D_1000209380. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41549 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 26.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.18800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1BTL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M 2-(N-MORPHOLINO) ETHANESULFONIC REMARK 280 ACID (MES) PH 6.5, 15% PEG 20.000 AND 15% PEG 550MME, PH 7.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.73500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.16500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.16500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.73500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 SER A 4 REMARK 465 ILE A 5 REMARK 465 GLN A 6 REMARK 465 HIS A 7 REMARK 465 PHE A 8 REMARK 465 ARG A 9 REMARK 465 VAL A 10 REMARK 465 ALA A 11 REMARK 465 LEU A 12 REMARK 465 ILE A 13 REMARK 465 PRO A 14 REMARK 465 PHE A 15 REMARK 465 PHE A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 PHE A 19 REMARK 465 CYS A 20 REMARK 465 LEU A 21 REMARK 465 PRO A 22 REMARK 465 VAL A 23 REMARK 465 PHE A 24 REMARK 465 ALA A 25 REMARK 465 LEU A 294 REMARK 465 GLU A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 288 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 147 CD GLU A 147 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 65 NE - CZ - NH1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 176 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 275 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 69 -145.71 55.92 REMARK 500 LEU A 220 -127.64 -103.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 965 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 966 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 967 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A 968 DISTANCE = 7.28 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZJ2 RELATED DB: PDB REMARK 900 RELATED ID: 4ZJ3 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS USED THE SEQUENCE FROM NCBI REFERENCE SEQUENCE: WP_ REMARK 999 000027050.1 DBREF 4ZJ1 A 3 290 UNP P62593 BLAT_ECOLX 1 286 SEQADV 4ZJ1 ILE A 84 UNP P62593 VAL 82 SEE REMARK 999 SEQADV 4ZJ1 VAL A 184 UNP P62593 ALA 182 SEE REMARK 999 SEQADV 4ZJ1 4OU A 216 UNP P62593 VAL 214 ENGINEERED MUTATION SEQADV 4ZJ1 ALA A 291 UNP P62593 EXPRESSION TAG SEQADV 4ZJ1 ALA A 292 UNP P62593 EXPRESSION TAG SEQADV 4ZJ1 ALA A 293 UNP P62593 EXPRESSION TAG SEQADV 4ZJ1 LEU A 294 UNP P62593 EXPRESSION TAG SEQADV 4ZJ1 GLU A 295 UNP P62593 EXPRESSION TAG SEQADV 4ZJ1 HIS A 296 UNP P62593 EXPRESSION TAG SEQADV 4ZJ1 HIS A 297 UNP P62593 EXPRESSION TAG SEQADV 4ZJ1 HIS A 298 UNP P62593 EXPRESSION TAG SEQADV 4ZJ1 HIS A 299 UNP P62593 EXPRESSION TAG SEQADV 4ZJ1 HIS A 300 UNP P62593 EXPRESSION TAG SEQADV 4ZJ1 HIS A 301 UNP P62593 EXPRESSION TAG SEQRES 1 A 297 MET SER ILE GLN HIS PHE ARG VAL ALA LEU ILE PRO PHE SEQRES 2 A 297 PHE ALA ALA PHE CYS LEU PRO VAL PHE ALA HIS PRO GLU SEQRES 3 A 297 THR LEU VAL LYS VAL LYS ASP ALA GLU ASP GLN LEU GLY SEQRES 4 A 297 ALA ARG VAL GLY TYR ILE GLU LEU ASP LEU ASN SER GLY SEQRES 5 A 297 LYS ILE LEU GLU SER PHE ARG PRO GLU GLU ARG PHE PRO SEQRES 6 A 297 MET MET SER THR PHE LYS VAL LEU LEU CYS GLY ALA VAL SEQRES 7 A 297 LEU SER ARG ILE ASP ALA GLY GLN GLU GLN LEU GLY ARG SEQRES 8 A 297 ARG ILE HIS TYR SER GLN ASN ASP LEU VAL GLU TYR SER SEQRES 9 A 297 PRO VAL THR GLU LYS HIS LEU THR ASP GLY MET THR VAL SEQRES 10 A 297 ARG GLU LEU CYS SER ALA ALA ILE THR MET SER ASP ASN SEQRES 11 A 297 THR ALA ALA ASN LEU LEU LEU THR THR ILE GLY GLY PRO SEQRES 12 A 297 LYS GLU LEU THR ALA PHE LEU HIS ASN MET GLY ASP HIS SEQRES 13 A 297 VAL THR ARG LEU ASP ARG TRP GLU PRO GLU LEU ASN GLU SEQRES 14 A 297 ALA ILE PRO ASN ASP GLU ARG ASP THR THR MET PRO VAL SEQRES 15 A 297 ALA MET ALA THR THR LEU ARG LYS LEU LEU THR GLY GLU SEQRES 16 A 297 LEU LEU THR LEU ALA SER ARG GLN GLN LEU ILE ASP TRP SEQRES 17 A 297 MET GLU ALA ASP LYS 4OU ALA GLY PRO LEU LEU ARG SER SEQRES 18 A 297 ALA LEU PRO ALA GLY TRP PHE ILE ALA ASP LYS SER GLY SEQRES 19 A 297 ALA GLY GLU ARG GLY SER ARG GLY ILE ILE ALA ALA LEU SEQRES 20 A 297 GLY PRO ASP GLY LYS PRO SER ARG ILE VAL VAL ILE TYR SEQRES 21 A 297 THR THR GLY SER GLN ALA THR MET ASP GLU ARG ASN ARG SEQRES 22 A 297 GLN ILE ALA GLU ILE GLY ALA SER LEU ILE LYS HIS TRP SEQRES 23 A 297 ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS HET 4OU A 216 16 HET GOL A 401 6 HET MES A 402 12 HET PEG A 403 14 HETNAM 4OU 4-(ACRYLOYLAMINO)-L-PHENYLALANINE HETNAM GOL GLYCEROL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 4OU C12 H14 N2 O3 FORMUL 2 GOL C3 H8 O3 FORMUL 3 MES C6 H13 N O4 S FORMUL 4 PEG C4 H10 O3 FORMUL 5 HOH *468(H2 O) HELIX 1 AA1 GLU A 28 GLY A 41 1 14 HELIX 2 AA2 THR A 71 ALA A 86 1 16 HELIX 3 AA3 SER A 98 LEU A 102 5 5 HELIX 4 AA4 VAL A 108 HIS A 112 5 5 HELIX 5 AA5 VAL A 119 MET A 129 1 11 HELIX 6 AA6 ASP A 131 GLY A 143 1 13 HELIX 7 AA7 GLY A 144 GLY A 156 1 13 HELIX 8 AA8 PRO A 167 GLU A 171 5 5 HELIX 9 AA9 MET A 182 GLY A 196 1 15 HELIX 10 AB1 THR A 200 ALA A 213 1 14 HELIX 11 AB2 LEU A 220 LEU A 225 5 6 HELIX 12 AB3 THR A 271 HIS A 289 1 19 SHEET 1 AA1 5 ILE A 56 PHE A 60 0 SHEET 2 AA1 5 ARG A 43 ASP A 50 -1 N GLU A 48 O LEU A 57 SHEET 3 AA1 5 ARG A 259 THR A 266 -1 O TYR A 264 N GLY A 45 SHEET 4 AA1 5 ARG A 244 GLY A 251 -1 N ILE A 246 O ILE A 263 SHEET 5 AA1 5 PHE A 230 ALA A 237 -1 N PHE A 230 O GLY A 251 SHEET 1 AA2 2 PHE A 66 PRO A 67 0 SHEET 2 AA2 2 THR A 180 THR A 181 -1 O THR A 181 N PHE A 66 SHEET 1 AA3 2 ARG A 94 ILE A 95 0 SHEET 2 AA3 2 MET A 117 THR A 118 -1 O MET A 117 N ILE A 95 SSBOND 1 CYS A 77 CYS A 123 1555 1555 2.15 LINK C LYS A 215 N 4OU A 216 1555 1555 1.36 LINK C 4OU A 216 N ALA A 217 1555 1555 1.33 CISPEP 1 GLU A 166 PRO A 167 0 6.20 SITE 1 AC1 9 ARG A 43 GLY A 156 ASP A 157 HIS A 158 SITE 2 AC1 9 ASN A 175 ALA A 185 HOH A 563 HOH A 578 SITE 3 AC1 9 HOH A 601 SITE 1 AC2 10 SER A 130 4OU A 216 LYS A 234 SER A 235 SITE 2 AC2 10 GLY A 236 ALA A 237 ARG A 244 MET A 272 SITE 3 AC2 10 HOH A 510 HOH A 531 SITE 1 AC3 5 ARG A 222 LEU A 225 PRO A 226 HOH A 626 SITE 2 AC3 5 HOH A 812 CRYST1 45.470 47.240 128.330 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021993 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007792 0.00000