HEADER TRANSFERASE 01-MAY-15 4ZLG TITLE CELLOBIONIC ACID PHOSPHORYLASE - GLUCONIC ACID COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE B-GLYCAN PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CELLOBIONIC ACID PHOSPHORYLASE; COMPND 5 EC: 2.4.1.321; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROPHAGUS DEGRADANS 2-40; SOURCE 3 ORGANISM_TAXID: 203122; SOURCE 4 STRAIN: 2-40; SOURCE 5 GENE: CEP94B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS (ALPHA/ALPHA)6 BARREL, GLYCOSIDE HYDROLASE FAMILY 94, OXIDATIVE KEYWDS 2 CELLULOSE DEGRADATION SYSTEM, INTRACELLULAR ENZYME, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.W.NAM,T.ARAKAWA,S.FUSHINOBU REVDAT 6 20-MAR-24 4ZLG 1 HETSYN REVDAT 5 29-JUL-20 4ZLG 1 COMPND REMARK HETNAM SITE REVDAT 5 2 1 ATOM REVDAT 4 19-FEB-20 4ZLG 1 JRNL REMARK REVDAT 3 05-AUG-15 4ZLG 1 JRNL REVDAT 2 17-JUN-15 4ZLG 1 JRNL REVDAT 1 10-JUN-15 4ZLG 0 JRNL AUTH Y.W.NAM,T.NIHIRA,T.ARAKAWA,Y.SAITO,M.KITAOKA,H.NAKAI, JRNL AUTH 2 S.FUSHINOBU JRNL TITL CRYSTAL STRUCTURE AND SUBSTRATE RECOGNITION OF CELLOBIONIC JRNL TITL 2 ACID PHOSPHORYLASE, WHICH PLAYS A KEY ROLE IN OXIDATIVE JRNL TITL 3 CELLULOSE DEGRADATION BY MICROBES. JRNL REF J.BIOL.CHEM. V. 290 18281 2015 JRNL REFN ESSN 1083-351X JRNL PMID 26041776 JRNL DOI 10.1074/JBC.M115.664664 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.NIHIRA,Y.SAITO,M.NISHIMOTO,M.KITAOKA,K.IGARASHI,K.OHTSUBO, REMARK 1 AUTH 2 H.NAKAI REMARK 1 TITL DISCOVERY OF CELLOBIONIC ACID PHOSPHORYLASE IN CELLULOLYTIC REMARK 1 TITL 2 BACTERIA AND FUNGI REMARK 1 REF FEBS LETT. V. 587 3556 2013 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 24055472 REMARK 1 DOI 10.1016/J.FEBSLET.2013.09.014 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 115743 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6113 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8498 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 471 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 688 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.076 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6435 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5912 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8733 ; 2.093 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13603 ; 1.136 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 784 ; 6.792 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 320 ;36.184 ;24.594 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1030 ;12.813 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;15.678 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 919 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7410 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1555 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3139 ; 2.528 ; 2.567 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3138 ; 2.526 ; 2.566 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3922 ; 3.066 ; 3.833 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3923 ; 3.065 ; 3.834 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3296 ; 4.108 ; 2.949 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3288 ; 4.107 ; 2.948 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4800 ; 5.971 ; 4.259 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7883 ; 7.149 ;22.209 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7517 ; 7.072 ;21.548 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209497. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6-6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97019 REMARK 200 MONOCHROMATOR : NUMERICAL LINK TYPE SI(111) REMARK 200 DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 124297 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.46800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, 0.1 M LI2SO4, REMARK 280 0.6 M (NH3)2SO4, 5%(V/V) GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.18133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.36267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 124.36267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.18133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 CYCLIC POINT SYMMETRY (SCHOENFLIES SYMBOL = C2). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 51180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -160.48950 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 92.65866 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1345 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 786 REMARK 465 THR A 787 REMARK 465 HIS A 788 REMARK 465 LEU A 789 REMARK 465 GLU A 790 REMARK 465 HIS A 791 REMARK 465 HIS A 792 REMARK 465 HIS A 793 REMARK 465 HIS A 794 REMARK 465 HIS A 795 REMARK 465 HIS A 796 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD ARG A 349 OD2 ASP A 405 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1278 O HOH A 1281 6445 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 81 CE1 TYR A 81 CZ 0.088 REMARK 500 TYR A 174 CE1 TYR A 174 CZ 0.084 REMARK 500 ARG A 349 CD ARG A 349 NE -0.117 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 113 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 LEU A 127 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 269 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 285 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 349 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ARG A 349 NE - CZ - NH2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 367 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 457 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ASP A 458 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 543 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 609 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG A 609 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 735 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 747 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 47 32.82 -140.47 REMARK 500 PHE A 64 -79.04 -95.85 REMARK 500 TYR A 95 -62.02 -170.06 REMARK 500 SER A 166 136.29 -175.67 REMARK 500 ASN A 231 69.54 -154.31 REMARK 500 ILE A 361 -61.04 -128.05 REMARK 500 TYR A 397 -122.73 51.12 REMARK 500 ALA A 456 49.50 -87.11 REMARK 500 ALA A 466 -126.03 46.02 REMARK 500 ASP A 469 -140.09 -127.14 REMARK 500 GLN A 508 76.35 -101.19 REMARK 500 VAL A 607 -53.17 -124.21 REMARK 500 ALA A 618 -133.60 51.99 REMARK 500 GLN A 721 53.05 -149.24 REMARK 500 GLU A 761 -4.39 72.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 349 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1587 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1588 DISTANCE = 6.09 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZLE RELATED DB: PDB REMARK 900 RELATED ID: 4ZLF RELATED DB: PDB REMARK 900 RELATED ID: 4ZLI RELATED DB: PDB DBREF 4ZLG A 1 788 UNP Q21MB1 Q21MB1_SACD2 1 788 SEQADV 4ZLG GLY A 1 UNP Q21MB1 MET 1 ENGINEERED MUTATION SEQADV 4ZLG LEU A 789 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLG GLU A 790 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLG HIS A 791 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLG HIS A 792 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLG HIS A 793 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLG HIS A 794 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLG HIS A 795 UNP Q21MB1 EXPRESSION TAG SEQADV 4ZLG HIS A 796 UNP Q21MB1 EXPRESSION TAG SEQRES 1 A 796 GLY LEU LYS ALA ILE ASN ASN GLY GLU ARG TYR GLN LEU SEQRES 2 A 796 THR SER PRO THR ALA MET PRO GLN SER ALA SER PHE LEU SEQRES 3 A 796 TRP ASN LYS LYS MET MET ILE GLN VAL ASN CYS ARG GLY SEQRES 4 A 796 TYR ALA VAL ALA GLN PHE MET GLN PRO GLU PRO ALA LYS SEQRES 5 A 796 TYR ALA TYR ALA PRO ASN LEU GLU ALA LYS THR PHE MET SEQRES 6 A 796 GLN PRO GLU GLN PRO TYR TYR ALA HIS HIS PRO GLY ARG SEQRES 7 A 796 PHE PHE TYR ILE LYS ASP GLU GLU THR GLY GLU ILE PHE SEQRES 8 A 796 SER ALA PRO TYR GLU PRO VAL ARG SER GLN LEU ASN ASN SEQRES 9 A 796 PHE SER PHE ASN ALA GLY LYS SER ASP ILE SER TRP HIS SEQRES 10 A 796 ILE ALA ALA LEU GLY ILE GLU VAL GLU LEU CYS LEU SER SEQRES 11 A 796 LEU PRO VAL ASP ASP VAL VAL GLU LEU TRP GLU LEU LYS SEQRES 12 A 796 ILE LYS ASN GLY GLY ALA GLN PRO ARG LYS LEU SER ILE SEQRES 13 A 796 TYR PRO TYR PHE PRO VAL GLY TYR MET SER TRP MET ASN SEQRES 14 A 796 GLN SER GLY ASP TYR SER GLN THR ALA GLY GLY ILE ILE SEQRES 15 A 796 ALA SER CYS VAL THR PRO TYR GLN LYS VAL ALA ASP TYR SEQRES 16 A 796 PHE LYS ASN LYS ASP PHE LYS ASP LYS THR PHE PHE LEU SEQRES 17 A 796 HIS GLU THR ALA PRO ALA ALA TRP GLU VAL ASN GLN LYS SEQRES 18 A 796 ASN PHE GLU GLY GLU GLY GLY LEU HIS ASN PRO ASN ALA SEQRES 19 A 796 ILE GLN GLN GLU THR LEU GLY CYS GLY ASN ALA LEU TYR SEQRES 20 A 796 GLU THR PRO THR ALA VAL LEU GLN TYR ARG ARG GLU LEU SEQRES 21 A 796 ALA ALA GLN GLU GLN GLN THR PHE ARG PHE ILE PHE GLY SEQRES 22 A 796 PRO ALA PHE ASP GLU SER GLU ALA ILE ALA LEU ARG ASN SEQRES 23 A 796 LYS TYR LEU SER ALA GLU GLY PHE ALA LYS ALA LYS SER SEQRES 24 A 796 GLU TYR GLN THR TYR ILE THR SER GLY LYS GLY CYS LEU SEQRES 25 A 796 GLN ILE ASN THR PRO ASP PRO GLU LEU ASN ASN PHE VAL SEQRES 26 A 796 ASN HIS TRP LEU PRO ARG GLN VAL PHE TYR HIS GLY ASP SEQRES 27 A 796 VAL ASN ARG LEU THR THR ASP PRO GLN THR ARG ASN TYR SEQRES 28 A 796 ILE GLN ASP ASN MET GLY MET SER TYR ILE LYS PRO ASN SEQRES 29 A 796 ILE THR ARG GLN ALA PHE LEU HIS ALA LEU SER GLN GLN SEQRES 30 A 796 GLU GLU SER GLY ALA MET PRO ASP GLY ILE LEU LEU LEU SEQRES 31 A 796 GLU GLY ALA GLU LEU LYS TYR ILE ASN GLN ILE PRO HIS SEQRES 32 A 796 THR ASP HIS CYS VAL TRP LEU PRO VAL CYS MET GLN ALA SEQRES 33 A 796 TYR LEU ASP GLU THR ASN ASP TYR ALA LEU LEU ASP GLU SEQRES 34 A 796 ILE VAL PRO TYR ALA SER GLY GLU LYS ARG GLU THR VAL SEQRES 35 A 796 GLU GLN HIS MET HIS HIS ALA MET ARG TRP LEU LEU GLN SEQRES 36 A 796 ALA ARG ASP GLU ARG GLY LEU SER PHE ILE ALA GLN GLY SEQRES 37 A 796 ASP TRP CYS ASP PRO MET ASN MET VAL GLY TYR LYS GLY SEQRES 38 A 796 LYS GLY VAL SER GLY TRP LEU SER VAL ALA THR ALA TYR SEQRES 39 A 796 ALA LEU ASN LEU TRP ALA ASP VAL CYS GLU GLN ARG GLN SEQRES 40 A 796 GLN ASN SER CYS ALA ASN GLU PHE ARG GLN GLY ALA LYS SEQRES 41 A 796 ASP ILE ASN ALA ALA VAL ASN LYS HIS ILE TRP ASP GLY SEQRES 42 A 796 GLU TRP PHE GLY ARG GLY ILE THR ASP ASP GLY VAL LEU SEQRES 43 A 796 PHE GLY THR SER LYS ASP LYS GLU GLY ARG ILE PHE LEU SEQRES 44 A 796 ASN PRO GLN SER TRP ALA ILE LEU GLY GLY ALA ALA ASP SEQRES 45 A 796 GLU GLN LYS ILE PRO CYS LEU LEU ASP ALA VAL GLU GLN SEQRES 46 A 796 GLN LEU GLU THR PRO TYR GLY VAL MET MET LEU ALA PRO SEQRES 47 A 796 ALA PHE THR ALA MET ARG ASP ASP VAL GLY ARG VAL THR SEQRES 48 A 796 GLN LYS PHE PRO GLY SER ALA GLU ASN GLY SER VAL TYR SEQRES 49 A 796 ASN HIS ALA ALA VAL PHE TYR ILE PHE SER LEU LEU SER SEQRES 50 A 796 ILE GLY GLU SER GLU ARG ALA TYR LYS LEU LEU ARG GLN SEQRES 51 A 796 MET LEU PRO GLY PRO ASP GLU ALA ASP LEU LEU GLN ARG SEQRES 52 A 796 GLY GLN LEU PRO VAL PHE ILE PRO ASN TYR TYR ARG GLY SEQRES 53 A 796 ALA TYR TYR GLN HIS PRO ARG THR ALA GLY ARG SER SER SEQRES 54 A 796 GLN LEU PHE ASN THR GLY THR VAL SER TRP VAL TYR ARG SEQRES 55 A 796 CYS LEU ILE GLU GLY VAL PHE GLY LEU LYS GLY SER PRO SEQRES 56 A 796 GLN GLY LEU VAL VAL GLN PRO GLN LEU PRO VAL ALA TRP SEQRES 57 A 796 GLN THR ALA GLU ALA VAL ARG GLU PHE ARG GLY ALA THR SEQRES 58 A 796 PHE ASN VAL SER TYR ARG LYS SER SER ASP ILE LYS GLU SEQRES 59 A 796 MET GLU ILE GLN LEU ASN GLU SER VAL ILE SER GLY ASN SEQRES 60 A 796 THR ILE SER ASP ILE THR ALA GLY ALA THR TYR GLN LEU SEQRES 61 A 796 THR VAL LEU LEU PRO ALA THR HIS LEU GLU HIS HIS HIS SEQRES 62 A 796 HIS HIS HIS HET GCO A 801 13 HET GOL A 802 6 HET GOL A 803 6 HET LGC A 804 12 HET SO4 A 805 5 HET SO4 A 806 5 HET CL A 807 1 HETNAM GCO D-GLUCONIC ACID HETNAM GOL GLYCEROL HETNAM LGC D-GLUCONO-1,5-LACTONE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN GCO GLUCONIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN LGC (3S,4R,5R,6S)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL) HETSYN 2 LGC TETRAHYDRO-2H-PYRAN-2-ONE; GLUCONOLACTONE FORMUL 2 GCO C6 H12 O7 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 LGC C6 H10 O6 FORMUL 6 SO4 2(O4 S 2-) FORMUL 8 CL CL 1- FORMUL 9 HOH *688(H2 O) HELIX 1 AA1 ASN A 6 GLY A 8 5 3 HELIX 2 AA2 LYS A 191 ASN A 198 1 8 HELIX 3 AA3 GLN A 220 GLY A 225 1 6 HELIX 4 AA4 PRO A 232 GLN A 237 1 6 HELIX 5 AA5 ASP A 277 LEU A 289 1 13 HELIX 6 AA6 SER A 290 GLY A 308 1 19 HELIX 7 AA7 ASP A 318 TRP A 328 1 11 HELIX 8 AA8 TRP A 328 ASN A 340 1 13 HELIX 9 AA9 GLN A 347 SER A 359 1 13 HELIX 10 AB1 LYS A 362 SER A 375 1 14 HELIX 11 AB2 LYS A 396 ILE A 401 5 6 HELIX 12 AB3 ASP A 405 CYS A 407 5 3 HELIX 13 AB4 VAL A 408 ASN A 422 1 15 HELIX 14 AB5 ASP A 423 ASP A 428 5 6 HELIX 15 AB6 VAL A 442 ALA A 456 1 15 HELIX 16 AB7 GLY A 486 ARG A 506 1 21 HELIX 17 AB8 GLN A 508 ILE A 530 1 23 HELIX 18 AB9 LEU A 559 GLY A 569 1 11 HELIX 19 AC1 LYS A 575 LEU A 587 1 13 HELIX 20 AC2 GLY A 608 LYS A 613 5 6 HELIX 21 AC3 ASN A 625 ILE A 638 1 14 HELIX 22 AC4 GLU A 640 GLN A 650 1 11 HELIX 23 AC5 ASP A 656 GLY A 664 1 9 HELIX 24 AC6 HIS A 681 ALA A 685 5 5 HELIX 25 AC7 GLY A 695 GLY A 707 1 13 SHEET 1 AA111 LEU A 2 ILE A 5 0 SHEET 2 AA111 ARG A 10 LEU A 13 -1 O GLN A 12 N LYS A 3 SHEET 3 AA111 ASN A 104 GLY A 110 -1 O ALA A 109 N TYR A 11 SHEET 4 AA111 ILE A 114 ALA A 120 -1 O SER A 115 N ASN A 108 SHEET 5 AA111 ILE A 123 SER A 130 -1 O VAL A 125 N ILE A 118 SHEET 6 AA111 GLU A 138 ASN A 146 -1 O LEU A 139 N SER A 130 SHEET 7 AA111 GLN A 265 ALA A 275 -1 O PHE A 272 N GLU A 138 SHEET 8 AA111 LYS A 204 HIS A 209 -1 N PHE A 206 O GLY A 273 SHEET 9 AA111 GLY A 180 CYS A 185 -1 N ALA A 183 O THR A 205 SHEET 10 AA111 GLN A 170 SER A 175 -1 N SER A 175 O GLY A 180 SHEET 11 AA111 ALA A 245 LEU A 246 -1 O ALA A 245 N GLY A 172 SHEET 1 AA2 4 ALA A 23 ASN A 28 0 SHEET 2 AA2 4 MET A 31 ASN A 36 -1 O VAL A 35 N SER A 24 SHEET 3 AA2 4 ALA A 41 MET A 46 -1 O VAL A 42 N GLN A 34 SHEET 4 AA2 4 PRO A 50 ALA A 51 -1 O ALA A 51 N PHE A 45 SHEET 1 AA3 5 ILE A 90 ALA A 93 0 SHEET 2 AA3 5 PHE A 79 ASP A 84 -1 N PHE A 80 O ALA A 93 SHEET 3 AA3 5 ARG A 152 PRO A 161 -1 O SER A 155 N LYS A 83 SHEET 4 AA3 5 PRO A 250 LEU A 260 -1 O ARG A 258 N LEU A 154 SHEET 5 AA3 5 ALA A 215 ASN A 219 -1 N ALA A 215 O GLN A 255 SHEET 1 AA4 6 LEU A 312 ASN A 315 0 SHEET 2 AA4 6 THR A 730 PHE A 737 -1 O GLU A 732 N ASN A 315 SHEET 3 AA4 6 ALA A 740 LYS A 748 -1 O VAL A 744 N ALA A 733 SHEET 4 AA4 6 THR A 777 LEU A 784 1 O VAL A 782 N SER A 745 SHEET 5 AA4 6 GLU A 756 LEU A 759 -1 N GLU A 756 O LEU A 783 SHEET 6 AA4 6 SER A 762 VAL A 763 -1 O SER A 762 N LEU A 759 SHEET 1 AA5 2 ILE A 430 PRO A 432 0 SHEET 2 AA5 2 ARG A 439 THR A 441 -1 O GLU A 440 N VAL A 431 SHEET 1 AA6 4 SER A 463 PHE A 464 0 SHEET 2 AA6 4 VAL A 484 SER A 485 -1 O SER A 485 N SER A 463 SHEET 3 AA6 4 GLY A 539 ILE A 540 -1 O ILE A 540 N VAL A 484 SHEET 4 AA6 4 LEU A 546 PHE A 547 -1 O PHE A 547 N GLY A 539 SHEET 1 AA7 2 ILE A 557 PHE A 558 0 SHEET 2 AA7 2 LEU A 596 ALA A 597 -1 O ALA A 597 N ILE A 557 SHEET 1 AA8 2 GLU A 588 THR A 589 0 SHEET 2 AA8 2 GLY A 592 VAL A 593 -1 O GLY A 592 N THR A 589 SHEET 1 AA9 2 VAL A 623 TYR A 624 0 SHEET 2 AA9 2 TYR A 673 TYR A 674 -1 O TYR A 674 N VAL A 623 SHEET 1 AB1 3 LEU A 711 SER A 714 0 SHEET 2 AB1 3 GLY A 717 VAL A 720 -1 O VAL A 719 N LYS A 712 SHEET 3 AB1 3 THR A 768 ILE A 769 -1 O ILE A 769 N LEU A 718 CISPEP 1 GLN A 47 PRO A 48 0 12.74 CISPEP 2 ALA A 93 PRO A 94 0 0.90 CISPEP 3 GLU A 96 PRO A 97 0 -4.44 CISPEP 4 ALA A 597 PRO A 598 0 -22.89 CISPEP 5 GLY A 654 PRO A 655 0 9.49 CRYST1 106.993 106.993 186.544 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009346 0.005396 0.000000 0.00000 SCALE2 0.000000 0.010792 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005361 0.00000