HEADER OXIDOREDUCTASE 04-MAY-15 4ZN6 TITLE X-RAY CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE TITLE 2 REDUCTOISOMERASE (ISPC) FROM ACINETOBACTER BAUMANNII COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ACBAC.01136.A.B1; COMPND 5 SYNONYM: DXP REDUCTOISOMERASE,1-DEOXYXYLULOSE-5-PHOSPHATE COMPND 6 REDUCTOISOMERASE,2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE SYNTHASE; COMPND 7 EC: 1.1.1.267; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER BAUMANNII (STRAIN AB307-0294); SOURCE 3 ORGANISM_TAXID: 557600; SOURCE 4 STRAIN: AB307-0294; SOURCE 5 GENE: DXR, ABBFA_001475; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: ACBAC.01136.A.B1 KEYWDS SSGCID, ISPC, 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 27-SEP-23 4ZN6 1 REMARK REVDAT 3 25-DEC-19 4ZN6 1 REMARK REVDAT 2 20-SEP-17 4ZN6 1 SOURCE KEYWDS REMARK REVDAT 1 13-MAY-15 4ZN6 0 JRNL AUTH J.W.FAIRMAN,D.D.LORIMER,T.E.EDWARDS JRNL TITL X-RAY CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE 5-PHOSPHATE JRNL TITL 2 REDUCTOISOMERASE (ISPC) FROM ACINETOBACTER BAUMANNII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 53510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.750 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7635 - 4.9382 1.00 3791 150 0.1610 0.1876 REMARK 3 2 4.9382 - 3.9206 1.00 3719 143 0.1361 0.1508 REMARK 3 3 3.9206 - 3.4252 1.00 3686 147 0.1536 0.1985 REMARK 3 4 3.4252 - 3.1122 1.00 3706 144 0.1748 0.2628 REMARK 3 5 3.1122 - 2.8892 1.00 3669 144 0.1878 0.2234 REMARK 3 6 2.8892 - 2.7189 1.00 3662 140 0.1854 0.2238 REMARK 3 7 2.7189 - 2.5827 1.00 3659 144 0.1810 0.2312 REMARK 3 8 2.5827 - 2.4703 1.00 3698 145 0.1769 0.2557 REMARK 3 9 2.4703 - 2.3752 1.00 3654 141 0.1814 0.2109 REMARK 3 10 2.3752 - 2.2933 1.00 3657 143 0.1736 0.2061 REMARK 3 11 2.2933 - 2.2216 0.99 3659 147 0.1775 0.2242 REMARK 3 12 2.2216 - 2.1581 0.99 3639 137 0.1906 0.2534 REMARK 3 13 2.1581 - 2.1013 0.99 3657 142 0.2084 0.2672 REMARK 3 14 2.1013 - 2.0500 1.00 3647 140 0.2395 0.3041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.43 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5948 REMARK 3 ANGLE : 0.804 8117 REMARK 3 CHIRALITY : 0.036 993 REMARK 3 PLANARITY : 0.004 1051 REMARK 3 DIHEDRAL : 12.989 2139 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 98 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3367 -31.8144 16.3270 REMARK 3 T TENSOR REMARK 3 T11: 0.1482 T22: 0.1169 REMARK 3 T33: 0.1691 T12: -0.0084 REMARK 3 T13: 0.0005 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.6349 L22: 1.8193 REMARK 3 L33: 2.5937 L12: -0.2200 REMARK 3 L13: -0.1224 L23: 1.2896 REMARK 3 S TENSOR REMARK 3 S11: -0.0523 S12: 0.0109 S13: -0.0998 REMARK 3 S21: 0.0574 S22: 0.0326 S23: -0.0681 REMARK 3 S31: 0.1818 S32: -0.0485 S33: 0.0223 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 99 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3222 -9.4806 13.2285 REMARK 3 T TENSOR REMARK 3 T11: 0.1271 T22: 0.1554 REMARK 3 T33: 0.2016 T12: 0.0094 REMARK 3 T13: -0.0081 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.6561 L22: 1.0266 REMARK 3 L33: 0.9584 L12: 0.5190 REMARK 3 L13: 0.6460 L23: 0.4698 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: 0.0890 S13: 0.0004 REMARK 3 S21: -0.0056 S22: -0.0069 S23: 0.0697 REMARK 3 S31: 0.0021 S32: -0.0045 S33: -0.0027 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 246 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8002 -6.9371 11.1734 REMARK 3 T TENSOR REMARK 3 T11: 0.1476 T22: 0.1479 REMARK 3 T33: 0.1287 T12: 0.0119 REMARK 3 T13: -0.0122 T23: 0.0235 REMARK 3 L TENSOR REMARK 3 L11: 3.3385 L22: 0.5943 REMARK 3 L33: 1.0429 L12: 0.1912 REMARK 3 L13: -0.9428 L23: 0.0962 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: -0.0757 S13: -0.0886 REMARK 3 S21: -0.0993 S22: -0.0342 S23: -0.0820 REMARK 3 S31: 0.0784 S32: 0.1563 S33: -0.0053 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 247 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5745 -6.4493 10.3769 REMARK 3 T TENSOR REMARK 3 T11: 0.1125 T22: 0.1314 REMARK 3 T33: 0.1606 T12: -0.0051 REMARK 3 T13: -0.0202 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.6533 L22: 0.5443 REMARK 3 L33: 1.4982 L12: -0.1807 REMARK 3 L13: -0.6267 L23: 0.2685 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: 0.0808 S13: 0.0058 REMARK 3 S21: -0.0498 S22: 0.0290 S23: -0.0394 REMARK 3 S31: 0.0336 S32: -0.0094 S33: -0.0406 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.1041 25.0858 45.3977 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1829 REMARK 3 T33: 0.1531 T12: 0.0465 REMARK 3 T13: 0.0029 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: 0.6696 L22: 1.7859 REMARK 3 L33: 1.3192 L12: -0.0715 REMARK 3 L13: 0.0738 L23: -0.3828 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.0629 S13: 0.0244 REMARK 3 S21: 0.2428 S22: 0.0553 S23: 0.0900 REMARK 3 S31: -0.2436 S32: -0.1793 S33: -0.0069 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 160 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9639 5.6481 48.7221 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.1890 REMARK 3 T33: 0.1465 T12: 0.0146 REMARK 3 T13: -0.0121 T23: -0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.3112 L22: 0.6055 REMARK 3 L33: 2.1738 L12: -0.0130 REMARK 3 L13: 0.3049 L23: -0.0497 REMARK 3 S TENSOR REMARK 3 S11: -0.0176 S12: -0.1164 S13: -0.0169 REMARK 3 S21: 0.1975 S22: 0.0271 S23: -0.0250 REMARK 3 S31: -0.1052 S32: 0.1837 S33: -0.0096 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.60 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND[111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53531 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 3ANM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MCSG1 SCREEN C8: 0.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M SODIUM CITRATE:HCL PH 5.60, 25% PEG 4000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.71500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS HAVE INDICATED THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 HIS A 217 REMARK 465 PRO A 218 REMARK 465 ASN A 219 REMARK 465 TRP A 220 REMARK 465 SER A 221 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 MET B 9 REMARK 465 CYS B 215 REMARK 465 LYS B 216 REMARK 465 HIS B 217 REMARK 465 PRO B 218 REMARK 465 ASN B 219 REMARK 465 TRP B 220 REMARK 465 SER B 221 REMARK 465 MET B 222 REMARK 465 GLY B 223 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 92 CG CD OE1 OE2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 MET A 222 CG SD CE REMARK 470 GLN A 321 CG CD OE1 NE2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 GLU A 376 CG CD OE1 OE2 REMARK 470 GLU A 384 CG CD OE1 OE2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 HIS B 45 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 ASP B 84 CG OD1 OD2 REMARK 470 GLU B 92 CG CD OE1 OE2 REMARK 470 ARG B 149 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 212 CG CD OE1 NE2 REMARK 470 GLN B 224 CG CD OE1 NE2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 ILE B 226 CG1 CG2 CD1 REMARK 470 SER B 227 OG REMARK 470 GLN B 321 CG CD OE1 NE2 REMARK 470 ARG B 358 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 LYS B 374 CG CD CE NZ REMARK 470 GLU B 376 CG CD OE1 OE2 REMARK 470 GLU B 381 CG CD OE1 OE2 REMARK 470 GLU B 384 CG CD OE1 OE2 REMARK 470 LYS B 391 CG CD CE NZ REMARK 470 GLN B 399 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 615 O HOH A 884 2.16 REMARK 500 OE1 GLU A 50 O HOH A 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 266 173.37 170.08 REMARK 500 SER B 266 174.01 171.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ACBAC.01136.A RELATED DB: TARGETTRACK DBREF 4ZN6 A 9 406 UNP B7H1U5 DXR_ACIB3 1 398 DBREF 4ZN6 B 9 406 UNP B7H1U5 DXR_ACIB3 1 398 SEQADV 4ZN6 MET A 1 UNP B7H1U5 INITIATING METHIONINE SEQADV 4ZN6 ALA A 2 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 3 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 4 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 5 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 6 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 7 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS A 8 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 MET B 1 UNP B7H1U5 INITIATING METHIONINE SEQADV 4ZN6 ALA B 2 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 3 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 4 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 5 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 6 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 7 UNP B7H1U5 EXPRESSION TAG SEQADV 4ZN6 HIS B 8 UNP B7H1U5 EXPRESSION TAG SEQRES 1 A 406 MET ALA HIS HIS HIS HIS HIS HIS MET THR GLN SER VAL SEQRES 2 A 406 CYS ILE LEU GLY VAL THR GLY SER ILE GLY ARG SER THR SEQRES 3 A 406 LEU LYS ILE LEU GLY GLN HIS PRO ASP LYS TYR SER VAL SEQRES 4 A 406 PHE ALA VAL SER ALA HIS SER ARG ILE SER GLU LEU VAL SEQRES 5 A 406 GLU ILE CYS LYS GLN PHE ARG PRO LYS VAL VAL VAL VAL SEQRES 6 A 406 PRO GLU GLN LYS ILE ALA GLU LEU LYS THR LEU PHE ALA SEQRES 7 A 406 GLN GLN ASN ILE SER ASP ILE ASP VAL LEU ALA GLY GLN SEQRES 8 A 406 GLU GLY LEU VAL ASP ILE ALA SER HIS THR ASP VAL ASP SEQRES 9 A 406 ILE VAL MET ALA ALA ILE VAL GLY ALA ALA GLY LEU LEU SEQRES 10 A 406 PRO THR LEU ALA ALA VAL LYS ALA GLY LYS ARG VAL LEU SEQRES 11 A 406 LEU ALA ASN LYS GLU ALA LEU VAL MET SER GLY GLU ILE SEQRES 12 A 406 MET MET GLN ALA ALA ARG ASP HIS GLN ALA LEU LEU LEU SEQRES 13 A 406 PRO VAL ASP SER GLU HIS ASN ALA ILE PHE GLN SER LEU SEQRES 14 A 406 PRO HIS ASN TYR LEU GLN ALA ASP ARG THR GLY GLN PRO SEQRES 15 A 406 GLN LEU GLY VAL SER LYS ILE LEU LEU THR ALA SER GLY SEQRES 16 A 406 GLY PRO PHE LEU ASN HIS SER LEU GLU GLN LEU VAL HIS SEQRES 17 A 406 VAL THR PRO GLN GLN ALA CYS LYS HIS PRO ASN TRP SER SEQRES 18 A 406 MET GLY GLN LYS ILE SER VAL ASP SER ALA THR LEU MET SEQRES 19 A 406 ASN LYS GLY LEU GLU LEU ILE GLU ALA CYS HIS LEU PHE SEQRES 20 A 406 SER ILE SER GLU HIS PHE VAL THR VAL VAL VAL HIS PRO SEQRES 21 A 406 GLN SER ILE ILE HIS SER MET VAL GLN TYR VAL ASP GLY SEQRES 22 A 406 SER THR LEU ALA GLN MET GLY ASN PRO ASP MET CYS THR SEQRES 23 A 406 PRO ILE ALA HIS ALA LEU ALA TRP PRO GLU ARG LEU GLN SEQRES 24 A 406 THR ASN VAL PRO ALA LEU ASP LEU PHE GLU TYR SER GLN SEQRES 25 A 406 LEU ASN PHE GLN ALA PRO ASP THR GLN LYS PHE PRO ALA SEQRES 26 A 406 LEU ASN LEU ALA ARG GLN ALA MET ARG ALA GLY GLY LEU SEQRES 27 A 406 ALA PRO THR ILE LEU ASN ALA ALA ASN GLU ILE ALA VAL SEQRES 28 A 406 GLU ALA PHE LEU MET GLU ARG ILE GLY PHE THR SER ILE SEQRES 29 A 406 PRO GLN VAL VAL GLU HIS THR LEU GLU LYS LEU GLU ASN SEQRES 30 A 406 ALA ALA ALA GLU SER ILE GLU CYS ILE LEU ASP LYS ASP SEQRES 31 A 406 LYS VAL ALA ARG SER VAL ALA GLN GLN TYR ILE SER SER SEQRES 32 A 406 ILE GLY GLY SEQRES 1 B 406 MET ALA HIS HIS HIS HIS HIS HIS MET THR GLN SER VAL SEQRES 2 B 406 CYS ILE LEU GLY VAL THR GLY SER ILE GLY ARG SER THR SEQRES 3 B 406 LEU LYS ILE LEU GLY GLN HIS PRO ASP LYS TYR SER VAL SEQRES 4 B 406 PHE ALA VAL SER ALA HIS SER ARG ILE SER GLU LEU VAL SEQRES 5 B 406 GLU ILE CYS LYS GLN PHE ARG PRO LYS VAL VAL VAL VAL SEQRES 6 B 406 PRO GLU GLN LYS ILE ALA GLU LEU LYS THR LEU PHE ALA SEQRES 7 B 406 GLN GLN ASN ILE SER ASP ILE ASP VAL LEU ALA GLY GLN SEQRES 8 B 406 GLU GLY LEU VAL ASP ILE ALA SER HIS THR ASP VAL ASP SEQRES 9 B 406 ILE VAL MET ALA ALA ILE VAL GLY ALA ALA GLY LEU LEU SEQRES 10 B 406 PRO THR LEU ALA ALA VAL LYS ALA GLY LYS ARG VAL LEU SEQRES 11 B 406 LEU ALA ASN LYS GLU ALA LEU VAL MET SER GLY GLU ILE SEQRES 12 B 406 MET MET GLN ALA ALA ARG ASP HIS GLN ALA LEU LEU LEU SEQRES 13 B 406 PRO VAL ASP SER GLU HIS ASN ALA ILE PHE GLN SER LEU SEQRES 14 B 406 PRO HIS ASN TYR LEU GLN ALA ASP ARG THR GLY GLN PRO SEQRES 15 B 406 GLN LEU GLY VAL SER LYS ILE LEU LEU THR ALA SER GLY SEQRES 16 B 406 GLY PRO PHE LEU ASN HIS SER LEU GLU GLN LEU VAL HIS SEQRES 17 B 406 VAL THR PRO GLN GLN ALA CYS LYS HIS PRO ASN TRP SER SEQRES 18 B 406 MET GLY GLN LYS ILE SER VAL ASP SER ALA THR LEU MET SEQRES 19 B 406 ASN LYS GLY LEU GLU LEU ILE GLU ALA CYS HIS LEU PHE SEQRES 20 B 406 SER ILE SER GLU HIS PHE VAL THR VAL VAL VAL HIS PRO SEQRES 21 B 406 GLN SER ILE ILE HIS SER MET VAL GLN TYR VAL ASP GLY SEQRES 22 B 406 SER THR LEU ALA GLN MET GLY ASN PRO ASP MET CYS THR SEQRES 23 B 406 PRO ILE ALA HIS ALA LEU ALA TRP PRO GLU ARG LEU GLN SEQRES 24 B 406 THR ASN VAL PRO ALA LEU ASP LEU PHE GLU TYR SER GLN SEQRES 25 B 406 LEU ASN PHE GLN ALA PRO ASP THR GLN LYS PHE PRO ALA SEQRES 26 B 406 LEU ASN LEU ALA ARG GLN ALA MET ARG ALA GLY GLY LEU SEQRES 27 B 406 ALA PRO THR ILE LEU ASN ALA ALA ASN GLU ILE ALA VAL SEQRES 28 B 406 GLU ALA PHE LEU MET GLU ARG ILE GLY PHE THR SER ILE SEQRES 29 B 406 PRO GLN VAL VAL GLU HIS THR LEU GLU LYS LEU GLU ASN SEQRES 30 B 406 ALA ALA ALA GLU SER ILE GLU CYS ILE LEU ASP LYS ASP SEQRES 31 B 406 LYS VAL ALA ARG SER VAL ALA GLN GLN TYR ILE SER SER SEQRES 32 B 406 ILE GLY GLY HET SO4 A 501 5 HET SO4 A 502 5 HET EDO A 503 4 HET SO4 B 501 5 HET EDO B 502 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 8 HOH *617(H2 O) HELIX 1 AA1 GLY A 20 HIS A 33 1 14 HELIX 2 AA2 ARG A 47 ARG A 59 1 13 HELIX 3 AA3 PRO A 66 GLN A 68 5 3 HELIX 4 AA4 LYS A 69 GLN A 80 1 12 HELIX 5 AA5 GLY A 90 SER A 99 1 10 HELIX 6 AA6 GLY A 112 ALA A 114 5 3 HELIX 7 AA7 GLY A 115 ALA A 125 1 11 HELIX 8 AA8 LYS A 134 MET A 139 1 6 HELIX 9 AA9 SER A 140 GLN A 152 1 13 HELIX 10 AB1 ASP A 159 LEU A 169 1 11 HELIX 11 AB2 ASN A 172 ALA A 176 5 5 HELIX 12 AB3 SER A 202 HIS A 208 1 7 HELIX 13 AB4 THR A 210 CYS A 215 1 6 HELIX 14 AB5 GLY A 223 LEU A 233 1 11 HELIX 15 AB6 LEU A 233 PHE A 247 1 15 HELIX 16 AB7 SER A 250 HIS A 252 5 3 HELIX 17 AB8 MET A 284 TRP A 294 1 11 HELIX 18 AB9 PRO A 324 GLY A 336 1 13 HELIX 19 AC1 LEU A 338 MET A 356 1 19 HELIX 20 AC2 THR A 362 LEU A 375 1 14 HELIX 21 AC3 SER A 382 ILE A 404 1 23 HELIX 22 AC4 GLY B 20 HIS B 33 1 14 HELIX 23 AC5 ARG B 47 ARG B 59 1 13 HELIX 24 AC6 PRO B 66 GLN B 68 5 3 HELIX 25 AC7 LYS B 69 GLN B 80 1 12 HELIX 26 AC8 GLY B 90 SER B 99 1 10 HELIX 27 AC9 GLY B 112 ALA B 114 5 3 HELIX 28 AD1 GLY B 115 ALA B 125 1 11 HELIX 29 AD2 LYS B 134 MET B 139 1 6 HELIX 30 AD3 SER B 140 HIS B 151 1 12 HELIX 31 AD4 ASP B 159 LEU B 169 1 11 HELIX 32 AD5 ASN B 172 ALA B 176 5 5 HELIX 33 AD6 SER B 202 HIS B 208 1 7 HELIX 34 AD7 LYS B 225 THR B 232 1 8 HELIX 35 AD8 LEU B 233 PHE B 247 1 15 HELIX 36 AD9 SER B 250 HIS B 252 5 3 HELIX 37 AE1 MET B 284 TRP B 294 1 11 HELIX 38 AE2 PRO B 324 GLY B 336 1 13 HELIX 39 AE3 LEU B 338 MET B 356 1 19 HELIX 40 AE4 GLY B 360 THR B 362 5 3 HELIX 41 AE5 SER B 363 LEU B 375 1 13 HELIX 42 AE6 SER B 382 ILE B 404 1 23 SHEET 1 AA1 7 ASP A 86 ALA A 89 0 SHEET 2 AA1 7 VAL A 62 VAL A 65 1 N VAL A 63 O ASP A 86 SHEET 3 AA1 7 TYR A 37 SER A 43 1 N VAL A 42 O VAL A 64 SHEET 4 AA1 7 GLN A 11 LEU A 16 1 N VAL A 13 O SER A 38 SHEET 5 AA1 7 ILE A 105 ALA A 108 1 O ILE A 105 N CYS A 14 SHEET 6 AA1 7 ARG A 128 LEU A 131 1 O LEU A 130 N VAL A 106 SHEET 7 AA1 7 LEU A 154 PRO A 157 1 O LEU A 154 N VAL A 129 SHEET 1 AA2 8 VAL A 254 VAL A 258 0 SHEET 2 AA2 8 VAL A 186 ALA A 193 1 N ILE A 189 O THR A 255 SHEET 3 AA2 8 ILE A 264 TYR A 270 -1 O GLN A 269 N LYS A 188 SHEET 4 AA2 8 THR A 275 MET A 279 -1 O LEU A 276 N VAL A 268 SHEET 5 AA2 8 THR B 275 MET B 279 -1 O THR B 275 N MET A 279 SHEET 6 AA2 8 ILE B 264 TYR B 270 -1 N VAL B 268 O LEU B 276 SHEET 7 AA2 8 VAL B 186 ALA B 193 -1 N LYS B 188 O GLN B 269 SHEET 8 AA2 8 VAL B 254 VAL B 258 1 O THR B 255 N ILE B 189 SHEET 1 AA3 2 GLN A 312 ASN A 314 0 SHEET 2 AA3 2 GLN B 312 ASN B 314 -1 O LEU B 313 N LEU A 313 SHEET 1 AA4 7 ASP B 86 ALA B 89 0 SHEET 2 AA4 7 VAL B 62 VAL B 65 1 N VAL B 63 O ASP B 86 SHEET 3 AA4 7 TYR B 37 SER B 43 1 N VAL B 42 O VAL B 64 SHEET 4 AA4 7 GLN B 11 LEU B 16 1 N VAL B 13 O SER B 38 SHEET 5 AA4 7 ILE B 105 ALA B 108 1 O ILE B 105 N CYS B 14 SHEET 6 AA4 7 ARG B 128 LEU B 131 1 O LEU B 130 N VAL B 106 SHEET 7 AA4 7 LEU B 154 PRO B 157 1 O LEU B 156 N LEU B 131 CISPEP 1 TRP A 294 PRO A 295 0 7.77 CISPEP 2 TRP B 294 PRO B 295 0 5.35 SITE 1 AC1 10 ALA A 193 SER A 194 SER A 230 ASN A 235 SITE 2 AC1 10 LYS A 236 HOH A 628 HOH A 632 HOH A 668 SITE 3 AC1 10 HOH A 748 HOH A 848 SITE 1 AC2 4 LYS A 124 HIS A 151 HIS A 208 HOH A 667 SITE 1 AC3 8 LEU A 131 ASN A 133 PRO A 157 VAL A 158 SITE 2 AC3 8 ASP A 159 HIS A 162 GLU A 242 HOH A 663 SITE 1 AC4 9 ALA B 193 SER B 194 SER B 230 ASN B 235 SITE 2 AC4 9 LYS B 236 HOH B 624 HOH B 652 HOH B 700 SITE 3 AC4 9 HOH B 752 SITE 1 AC5 4 LEU A 190 LEU B 305 ASP B 306 LEU B 307 CRYST1 54.270 65.430 121.680 90.00 92.09 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018426 0.000000 0.000672 0.00000 SCALE2 0.000000 0.015284 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008224 0.00000