data_4ZNP # _entry.id 4ZNP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ZNP pdb_00004znp 10.2210/pdb4znp/pdb WWPDB D_1000209577 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-08-26 2 'Structure model' 1 1 2017-09-20 3 'Structure model' 1 2 2019-12-04 4 'Structure model' 1 3 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_struct_oper_list 3 3 'Structure model' pdbx_audit_support 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_struct_conn_angle 8 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 2 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 3 'Structure model' '_pdbx_audit_support.funding_organization' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.value' 24 4 'Structure model' '_struct_conn.pdbx_dist_value' 25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4ZNP _pdbx_database_status.recvd_initial_deposition_date 2015-05-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ren, A.' 1 'Patel, D.J.' 2 'Rajashankar, R.K.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Structure _citation.journal_id_ASTM STRUE6 _citation.journal_id_CSD 2005 _citation.journal_id_ISSN 0969-2126 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 23 _citation.language ? _citation.page_first 1375 _citation.page_last 1381 _citation.title 'Global RNA Fold and Molecular Recognition for a pfl Riboswitch Bound to ZMP, a Master Regulator of One-Carbon Metabolism.' _citation.year 2015 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.str.2015.05.016 _citation.pdbx_database_id_PubMed 26118534 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ren, A.' 1 ? primary 'Rajashankar, K.R.' 2 ? primary 'Patel, D.J.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'pfI Riboswitch' 23709.215 2 ? ? ? ? 2 non-polymer syn 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' 338.211 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 4 water nat water 18.015 5 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGAUACAGGACUGGCGGAUUAGUGGGAAACCACGUGGACUGUAUCCGAAAAAAAGCCGACCGCCUGGGCAUC _entity_poly.pdbx_seq_one_letter_code_can GGGAUACAGGACUGGCGGAUUAGUGGGAAACCACGUGGACUGUAUCCGAAAAAAAGCCGACCGCCUGGGCAUC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' AMZ 3 'MAGNESIUM ION' MG 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 A n 1 5 U n 1 6 A n 1 7 C n 1 8 A n 1 9 G n 1 10 G n 1 11 A n 1 12 C n 1 13 U n 1 14 G n 1 15 G n 1 16 C n 1 17 G n 1 18 G n 1 19 A n 1 20 U n 1 21 U n 1 22 A n 1 23 G n 1 24 U n 1 25 G n 1 26 G n 1 27 G n 1 28 A n 1 29 A n 1 30 A n 1 31 C n 1 32 C n 1 33 A n 1 34 C n 1 35 G n 1 36 U n 1 37 G n 1 38 G n 1 39 A n 1 40 C n 1 41 U n 1 42 G n 1 43 U n 1 44 A n 1 45 U n 1 46 C n 1 47 C n 1 48 G n 1 49 A n 1 50 A n 1 51 A n 1 52 A n 1 53 A n 1 54 A n 1 55 A n 1 56 G n 1 57 C n 1 58 C n 1 59 G n 1 60 A n 1 61 C n 1 62 C n 1 63 G n 1 64 C n 1 65 C n 1 66 U n 1 67 G n 1 68 G n 1 69 G n 1 70 C n 1 71 A n 1 72 U n 1 73 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 73 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AMZ non-polymer . 'AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE' AICAR 'C9 H15 N4 O8 P' 338.211 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 A 4 4 4 A A A . n A 1 5 U 5 5 5 U U A . n A 1 6 A 6 6 6 A A A . n A 1 7 C 7 7 7 C C A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 A 11 11 11 A A A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 G 14 14 14 G G A . n A 1 15 G 15 15 15 G G A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 G 18 18 18 G G A . n A 1 19 A 19 19 19 A A A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n A 1 24 U 24 24 24 U U A . n A 1 25 G 25 25 25 G G A . n A 1 26 G 26 26 26 G G A . n A 1 27 G 27 27 27 G G A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 A 30 30 30 A A A . n A 1 31 C 31 31 31 C C A . n A 1 32 C 32 32 32 C C A . n A 1 33 A 33 33 33 A A A . n A 1 34 C 34 34 34 C C A . n A 1 35 G 35 35 35 G G A . n A 1 36 U 36 36 36 U U A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 A 39 39 39 A A A . n A 1 40 C 40 40 40 C C A . n A 1 41 U 41 41 41 U U A . n A 1 42 G 42 42 42 G G A . n A 1 43 U 43 43 43 U U A . n A 1 44 A 44 44 44 A A A . n A 1 45 U 45 45 45 U U A . n A 1 46 C 46 46 46 C C A . n A 1 47 C 47 47 47 C C A . n A 1 48 G 48 48 48 G G A . n A 1 49 A 49 49 49 A A A . n A 1 50 A 50 50 50 A A A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 A 53 53 53 A A A . n A 1 54 A 54 54 54 A A A . n A 1 55 A 55 55 55 A A A . n A 1 56 G 56 56 56 G G A . n A 1 57 C 57 57 57 C C A . n A 1 58 C 58 58 58 C C A . n A 1 59 G 59 59 59 G G A . n A 1 60 A 60 60 60 A A A . n A 1 61 C 61 61 61 C C A . n A 1 62 C 62 62 62 C C A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 C 65 65 65 C C A . n A 1 66 U 66 66 66 U U A . n A 1 67 G 67 67 67 G G A . n A 1 68 G 68 68 68 G G A . n A 1 69 G 69 69 69 G G A . n A 1 70 C 70 70 70 C C A . n A 1 71 A 71 71 71 A A A . n A 1 72 U 72 72 72 U U A . n A 1 73 C 73 73 73 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 G 2 2 2 G G B . n B 1 3 G 3 3 3 G G B . n B 1 4 A 4 4 4 A A B . n B 1 5 U 5 5 5 U U B . n B 1 6 A 6 6 6 A A B . n B 1 7 C 7 7 7 C C B . n B 1 8 A 8 8 8 A A B . n B 1 9 G 9 9 9 G G B . n B 1 10 G 10 10 10 G G B . n B 1 11 A 11 11 11 A A B . n B 1 12 C 12 12 12 C C B . n B 1 13 U 13 13 13 U U B . n B 1 14 G 14 14 14 G G B . n B 1 15 G 15 15 15 G G B . n B 1 16 C 16 16 16 C C B . n B 1 17 G 17 17 17 G G B . n B 1 18 G 18 18 18 G G B . n B 1 19 A 19 19 19 A A B . n B 1 20 U 20 20 20 U U B . n B 1 21 U 21 21 21 U U B . n B 1 22 A 22 22 22 A A B . n B 1 23 G 23 23 23 G G B . n B 1 24 U 24 24 24 U U B . n B 1 25 G 25 25 25 G G B . n B 1 26 G 26 26 26 G G B . n B 1 27 G 27 27 27 G G B . n B 1 28 A 28 28 28 A A B . n B 1 29 A 29 29 29 A A B . n B 1 30 A 30 30 30 A A B . n B 1 31 C 31 31 31 C C B . n B 1 32 C 32 32 32 C C B . n B 1 33 A 33 33 33 A A B . n B 1 34 C 34 34 34 C C B . n B 1 35 G 35 35 35 G G B . n B 1 36 U 36 36 36 U U B . n B 1 37 G 37 37 37 G G B . n B 1 38 G 38 38 38 G G B . n B 1 39 A 39 39 39 A A B . n B 1 40 C 40 40 40 C C B . n B 1 41 U 41 41 41 U U B . n B 1 42 G 42 42 42 G G B . n B 1 43 U 43 43 43 U U B . n B 1 44 A 44 44 44 A A B . n B 1 45 U 45 45 45 U U B . n B 1 46 C 46 46 46 C C B . n B 1 47 C 47 47 47 C C B . n B 1 48 G 48 48 48 G G B . n B 1 49 A 49 49 ? ? ? B . n B 1 50 A 50 50 ? ? ? B . n B 1 51 A 51 51 ? ? ? B . n B 1 52 A 52 52 ? ? ? B . n B 1 53 A 53 53 ? ? ? B . n B 1 54 A 54 54 ? ? ? B . n B 1 55 A 55 55 ? ? ? B . n B 1 56 G 56 56 56 G G B . n B 1 57 C 57 57 57 C C B . n B 1 58 C 58 58 58 C C B . n B 1 59 G 59 59 59 G G B . n B 1 60 A 60 60 60 A A B . n B 1 61 C 61 61 61 C C B . n B 1 62 C 62 62 62 C C B . n B 1 63 G 63 63 63 G G B . n B 1 64 C 64 64 64 C C B . n B 1 65 C 65 65 65 C C B . n B 1 66 U 66 66 66 U U B . n B 1 67 G 67 67 67 G G B . n B 1 68 G 68 68 68 G G B . n B 1 69 G 69 69 69 G G B . n B 1 70 C 70 70 70 C C B . n B 1 71 A 71 71 71 A A B . n B 1 72 U 72 72 72 U U B . n B 1 73 C 73 73 73 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AMZ 1 101 1 AMZ AMZ A . D 3 MG 1 102 1 MG MG A . E 3 MG 1 103 3 MG MG A . F 2 AMZ 1 101 2 AMZ AMZ B . G 3 MG 1 102 2 MG MG B . H 4 HOH 1 201 2 HOH HOH A . H 4 HOH 2 202 1 HOH HOH A . H 4 HOH 3 203 3 HOH HOH A . H 4 HOH 4 204 4 HOH HOH A . H 4 HOH 5 205 5 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? dev_1839 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 4 # _cell.entry_id 4ZNP _cell.length_a 152.195 _cell.length_b 152.195 _cell.length_c 86.891 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZNP _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4ZNP _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.06 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 59.85 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 M Na-acetate, pH 4.6, 0.2 M (NH4)2SO4 and 20-30% PEG4000/PEG2000MEM' _exptl_crystal_grow.pdbx_pH_range 4.6 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-12-20 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator Ir _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4ZNP _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.94 _reflns.d_resolution_low 43.2 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 13111 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 34.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4ZNP _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 13111 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.2 _refine.ls_d_res_high 2.94 _refine.ls_percent_reflns_obs 99.60 _refine.ls_R_factor_obs 0.2244 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2231 _refine.ls_R_factor_R_free 0.2484 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.84 _refine.ls_number_reflns_R_free 634 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.52 _refine.pdbx_overall_phase_error 34.19 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2994 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 5 _refine_hist.number_atoms_total 3046 _refine_hist.d_res_high 2.94 _refine_hist.d_res_low 43.2 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.007 ? ? 3396 'X-RAY DIFFRACTION' ? f_angle_d 1.394 ? ? 5287 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 18.780 ? ? 1673 'X-RAY DIFFRACTION' ? f_chiral_restr 0.058 ? ? 703 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 143 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.9353 3.1618 2433 0.3566 99.00 0.4558 . . 114 . . . . 'X-RAY DIFFRACTION' . 3.1618 3.4799 2450 0.2866 100.00 0.3022 . . 124 . . . . 'X-RAY DIFFRACTION' . 3.4799 3.9831 2446 0.2690 99.00 0.3159 . . 133 . . . . 'X-RAY DIFFRACTION' . 3.9831 5.0171 2509 0.2333 100.00 0.2695 . . 121 . . . . 'X-RAY DIFFRACTION' . 5.0171 43.2229 2639 0.1824 100.00 0.1994 . . 142 . . . . # _struct.entry_id 4ZNP _struct.title 'The structure of A pfI Riboswitch Bound to ZMP' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4ZNP _struct_keywords.text 'ZMP, riboswitch, RNA, one carbon mechanism, AICAR, ZTP, Complex' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 2 ? G N N 3 ? H N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4ZNP _struct_ref.pdbx_db_accession 4ZNP _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ZNP A 1 ? 73 ? 4ZNP 1 ? 73 ? 1 73 2 1 4ZNP B 1 ? 73 ? 4ZNP 1 ? 73 ? 1 73 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA monomeric 1 2 author_and_software_defined_assembly PISA monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,E,H 2 1 B,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 13 OP1 ? ? ? 1_555 D MG . MG ? ? A U 13 A MG 102 1_555 ? ? ? ? ? ? ? 2.138 ? ? metalc2 metalc ? ? A C 31 OP2 ? ? ? 1_555 D MG . MG ? ? A C 31 A MG 102 1_555 ? ? ? ? ? ? ? 2.386 ? ? metalc3 metalc ? ? C AMZ . O5 ? ? ? 1_555 D MG . MG ? ? A AMZ 101 A MG 102 1_555 ? ? ? ? ? ? ? 2.336 ? ? metalc4 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 201 1_555 ? ? ? ? ? ? ? 2.300 ? ? metalc5 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 202 1_555 ? ? ? ? ? ? ? 1.853 ? ? metalc6 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 102 A HOH 203 1_555 ? ? ? ? ? ? ? 2.188 ? ? metalc7 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 103 A HOH 204 1_555 ? ? ? ? ? ? ? 2.566 ? ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 103 A HOH 205 1_555 ? ? ? ? ? ? ? 1.954 ? ? metalc9 metalc ? ? B U 13 OP1 ? ? ? 1_555 G MG . MG ? ? B U 13 B MG 102 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc10 metalc ? ? B C 31 OP2 ? ? ? 1_555 G MG . MG ? ? B C 31 B MG 102 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc11 metalc ? ? F AMZ . O5 ? ? ? 1_555 G MG . MG ? ? B AMZ 101 B MG 102 1_555 ? ? ? ? ? ? ? 2.477 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 47 O2 ? ? A G 2 A C 47 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog2 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 3 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 3 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 3 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 4 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 4 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 5 N3 ? ? ? 1_555 A A 44 N1 ? ? A U 5 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 5 O4 ? ? ? 1_555 A A 44 N6 ? ? A U 5 A A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 43 O4 ? ? A A 6 A U 43 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog10 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 7 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 7 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 7 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 41 N3 ? ? A A 8 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 8 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 9 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 9 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 9 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 9 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 9 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 9 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A G 10 N2 ? ? ? 1_555 A A 39 N7 ? ? A G 10 A A 39 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog19 hydrog ? ? A G 10 N3 ? ? ? 1_555 A A 39 N6 ? ? A G 10 A A 39 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog20 hydrog ? ? A A 11 N7 ? ? ? 1_555 A G 38 N2 ? ? A A 11 A G 38 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog21 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 37 N1 ? ? A C 12 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 12 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 37 N2 ? ? A C 12 A G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 13 N3 ? ? ? 1_555 A U 36 O4 ? ? A U 13 A U 36 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog25 hydrog ? ? A U 13 O2 ? ? ? 1_555 A U 36 N3 ? ? A U 13 A U 36 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog26 hydrog ? ? A G 14 N2 ? ? ? 1_555 A A 30 N3 ? ? A G 14 A A 30 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog27 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 14 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 14 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 14 A C 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 15 N7 ? ? ? 1_555 A A 60 N6 ? ? A G 15 A A 60 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog31 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 15 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 15 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 15 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 16 N4 ? ? ? 1_555 A A 60 N1 ? ? A C 16 A A 60 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog35 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 16 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 16 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 16 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 17 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 17 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 17 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 18 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 18 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 18 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 18 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 18 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 18 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 23 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 23 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 23 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 24 N3 ? ? ? 1_555 A A 33 N1 ? ? A U 24 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A U 24 O4 ? ? ? 1_555 A A 33 N6 ? ? A U 24 A A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 25 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 25 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 25 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 25 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 25 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 25 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 31 N3 ? ? A G 26 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 31 O2 ? ? A G 26 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 31 N4 ? ? A G 26 A C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 27 N3 ? ? ? 1_555 B A 29 N6 ? ? A G 27 B A 29 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog56 hydrog ? ? A A 28 N6 ? ? ? 1_555 B C 31 O2 ? ? A A 28 B C 31 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? ? hydrog57 hydrog ? ? A A 29 N6 ? ? ? 1_555 B G 27 N3 ? ? A A 29 B G 27 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog58 hydrog ? ? A C 31 O2 ? ? ? 1_555 B A 28 N6 ? ? A C 31 B A 28 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog59 hydrog ? ? A G 56 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 56 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 56 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 56 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 57 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 57 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 57 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 57 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 57 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 57 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 68 N1 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 68 O6 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 68 N2 ? ? A C 58 A G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 59 O6 ? ? ? 1_555 A G 67 N1 ? ? A G 59 A G 67 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog69 hydrog ? ? B U 5 N3 ? ? ? 1_555 B A 44 N1 ? ? B U 5 B A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? B U 5 O4 ? ? ? 1_555 B A 44 N6 ? ? B U 5 B A 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? B C 7 N4 ? ? ? 1_555 B G 42 O6 ? ? B C 7 B G 42 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog72 hydrog ? ? B A 8 N1 ? ? ? 1_555 B U 41 N3 ? ? B A 8 B U 41 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog73 hydrog ? ? B G 9 N1 ? ? ? 1_555 B C 40 N3 ? ? B G 9 B C 40 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog74 hydrog ? ? B G 10 N2 ? ? ? 1_555 B A 39 N7 ? ? B G 10 B A 39 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog75 hydrog ? ? B G 10 N3 ? ? ? 1_555 B A 39 N6 ? ? B G 10 B A 39 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog76 hydrog ? ? B A 11 N6 ? ? ? 1_555 B G 38 N3 ? ? B A 11 B G 38 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog77 hydrog ? ? B A 11 N7 ? ? ? 1_555 B G 38 N2 ? ? B A 11 B G 38 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog78 hydrog ? ? B C 12 N3 ? ? ? 1_555 B G 37 N1 ? ? B C 12 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? B C 12 N4 ? ? ? 1_555 B G 37 O6 ? ? B C 12 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? B C 12 O2 ? ? ? 1_555 B G 37 N2 ? ? B C 12 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? B G 14 N1 ? ? ? 1_555 B C 65 N3 ? ? B G 14 B C 65 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog82 hydrog ? ? B G 15 N7 ? ? ? 1_555 B A 60 N6 ? ? B G 15 B A 60 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog83 hydrog ? ? B G 15 N1 ? ? ? 1_555 B C 64 N3 ? ? B G 15 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? B G 15 N2 ? ? ? 1_555 B C 64 O2 ? ? B G 15 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 15 O6 ? ? ? 1_555 B C 64 N4 ? ? B G 15 B C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? B C 16 N3 ? ? ? 1_555 B G 63 N1 ? ? B C 16 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? B C 16 N4 ? ? ? 1_555 B G 63 O6 ? ? B C 16 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B C 16 O2 ? ? ? 1_555 B G 63 N2 ? ? B C 16 B G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B G 17 N1 ? ? ? 1_555 B C 62 N3 ? ? B G 17 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B G 17 N2 ? ? ? 1_555 B C 62 O2 ? ? B G 17 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B G 17 O6 ? ? ? 1_555 B C 62 N4 ? ? B G 17 B C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B G 18 N2 ? ? ? 1_555 B C 61 O2 ? ? B G 18 B C 61 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog93 hydrog ? ? B G 23 N1 ? ? ? 1_555 B C 34 N3 ? ? B G 23 B C 34 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog94 hydrog ? ? B U 24 N3 ? ? ? 1_555 B A 33 N1 ? ? B U 24 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B U 24 O4 ? ? ? 1_555 B A 33 N6 ? ? B U 24 B A 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 25 N1 ? ? ? 1_555 B C 32 N3 ? ? B G 25 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 25 N2 ? ? ? 1_555 B C 32 O2 ? ? B G 25 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 25 O6 ? ? ? 1_555 B C 32 N4 ? ? B G 25 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B G 26 N1 ? ? ? 1_555 B C 31 N3 ? ? B G 26 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? B G 26 N2 ? ? ? 1_555 B C 31 O2 ? ? B G 26 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? B G 26 O6 ? ? ? 1_555 B C 31 N4 ? ? B G 26 B C 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? B G 56 N2 ? ? ? 1_555 B C 70 O2 ? ? B G 56 B C 70 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog103 hydrog ? ? B C 57 N4 ? ? ? 1_555 B G 69 O6 ? ? B C 57 B G 69 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog104 hydrog ? ? B C 58 N3 ? ? ? 1_555 B G 68 N1 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B C 58 N4 ? ? ? 1_555 B G 68 O6 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B C 58 O2 ? ? ? 1_555 B G 68 N2 ? ? B C 58 B G 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B G 59 O6 ? ? ? 1_555 B G 67 N1 ? ? B G 59 B G 67 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A U 13 ? A U 13 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 OP2 ? A C 31 ? A C 31 ? 1_555 138.3 ? 2 OP1 ? A U 13 ? A U 13 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O5 ? C AMZ . ? A AMZ 101 ? 1_555 72.2 ? 3 OP2 ? A C 31 ? A C 31 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O5 ? C AMZ . ? A AMZ 101 ? 1_555 76.7 ? 4 OP1 ? A U 13 ? A U 13 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 201 ? 1_555 64.6 ? 5 OP2 ? A C 31 ? A C 31 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 201 ? 1_555 79.4 ? 6 O5 ? C AMZ . ? A AMZ 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 201 ? 1_555 70.5 ? 7 OP1 ? A U 13 ? A U 13 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 87.2 ? 8 OP2 ? A C 31 ? A C 31 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 116.0 ? 9 O5 ? C AMZ . ? A AMZ 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 83.2 ? 10 O ? H HOH . ? A HOH 201 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 202 ? 1_555 145.9 ? 11 OP1 ? A U 13 ? A U 13 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 76.8 ? 12 OP2 ? A C 31 ? A C 31 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 110.5 ? 13 O5 ? C AMZ . ? A AMZ 101 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 136.8 ? 14 O ? H HOH . ? A HOH 201 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 69.4 ? 15 O ? H HOH . ? A HOH 202 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O ? H HOH . ? A HOH 203 ? 1_555 124.7 ? 16 O ? H HOH . ? A HOH 204 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? H HOH . ? A HOH 205 ? 1_555 57.8 ? 17 OP1 ? B U 13 ? B U 13 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 OP2 ? B C 31 ? B C 31 ? 1_555 137.8 ? 18 OP1 ? B U 13 ? B U 13 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O5 ? F AMZ . ? B AMZ 101 ? 1_555 66.0 ? 19 OP2 ? B C 31 ? B C 31 ? 1_555 MG ? G MG . ? B MG 102 ? 1_555 O5 ? F AMZ . ? B AMZ 101 ? 1_555 91.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AMZ 101 ? 11 'binding site for residue AMZ A 101' AC2 Software A MG 102 ? 6 'binding site for residue MG A 102' AC3 Software A MG 103 ? 4 'binding site for residue MG A 103' AC4 Software B AMZ 101 ? 10 'binding site for residue AMZ B 101' AC5 Software B MG 102 ? 3 'binding site for residue MG B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 U A 13 ? U A 13 . ? 1_555 ? 2 AC1 11 G A 14 ? G A 14 . ? 1_555 ? 3 AC1 11 A A 30 ? A A 30 . ? 1_555 ? 4 AC1 11 C A 31 ? C A 31 . ? 1_555 ? 5 AC1 11 G A 59 ? G A 59 . ? 1_555 ? 6 AC1 11 C A 65 ? C A 65 . ? 1_555 ? 7 AC1 11 U A 66 ? U A 66 . ? 1_555 ? 8 AC1 11 G A 67 ? G A 67 . ? 1_555 ? 9 AC1 11 MG D . ? MG A 102 . ? 1_555 ? 10 AC1 11 HOH H . ? HOH A 201 . ? 1_555 ? 11 AC1 11 HOH H . ? HOH A 202 . ? 1_555 ? 12 AC2 6 U A 13 ? U A 13 . ? 1_555 ? 13 AC2 6 C A 31 ? C A 31 . ? 1_555 ? 14 AC2 6 AMZ C . ? AMZ A 101 . ? 1_555 ? 15 AC2 6 HOH H . ? HOH A 201 . ? 1_555 ? 16 AC2 6 HOH H . ? HOH A 202 . ? 1_555 ? 17 AC2 6 HOH H . ? HOH A 203 . ? 1_555 ? 18 AC3 4 A A 22 ? A A 22 . ? 1_555 ? 19 AC3 4 G A 23 ? G A 23 . ? 1_555 ? 20 AC3 4 HOH H . ? HOH A 204 . ? 1_555 ? 21 AC3 4 HOH H . ? HOH A 205 . ? 1_555 ? 22 AC4 10 U B 13 ? U B 13 . ? 1_555 ? 23 AC4 10 G B 14 ? G B 14 . ? 1_555 ? 24 AC4 10 A B 30 ? A B 30 . ? 1_555 ? 25 AC4 10 C B 31 ? C B 31 . ? 1_555 ? 26 AC4 10 G B 59 ? G B 59 . ? 1_555 ? 27 AC4 10 A B 60 ? A B 60 . ? 1_555 ? 28 AC4 10 C B 65 ? C B 65 . ? 1_555 ? 29 AC4 10 U B 66 ? U B 66 . ? 1_555 ? 30 AC4 10 G B 67 ? G B 67 . ? 1_555 ? 31 AC4 10 MG G . ? MG B 102 . ? 1_555 ? 32 AC5 3 U B 13 ? U B 13 . ? 1_555 ? 33 AC5 3 C B 31 ? C B 31 . ? 1_555 ? 34 AC5 3 AMZ F . ? AMZ B 101 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O2 B U 20 ? ? C8 B A 22 ? ? 2.03 2 1 O2 B U 20 ? ? N7 B A 22 ? ? 2.03 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O2'" _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 A _pdbx_validate_symm_contact.auth_seq_id_1 54 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O2 _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 C _pdbx_validate_symm_contact.auth_seq_id_2 61 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_555 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A A 19 ? ? "C1'" A A 19 ? ? N9 A A 19 ? ? 112.90 108.50 4.40 0.70 N 2 1 N3 A G 23 ? ? C4 A G 23 ? ? C5 A G 23 ? ? 125.32 128.60 -3.28 0.50 N 3 1 "O4'" A A 29 ? ? "C1'" A A 29 ? ? N9 A A 29 ? ? 113.50 108.50 5.00 0.70 N 4 1 C2 A A 29 ? ? N3 A A 29 ? ? C4 A A 29 ? ? 107.22 110.60 -3.38 0.50 N 5 1 C5 A A 29 ? ? N7 A A 29 ? ? C8 A A 29 ? ? 100.47 103.90 -3.43 0.50 N 6 1 N7 A A 29 ? ? C8 A A 29 ? ? N9 A A 29 ? ? 117.11 113.80 3.31 0.50 N 7 1 N1 A A 50 ? ? C6 A A 50 ? ? N6 A A 50 ? ? 113.76 118.60 -4.84 0.60 N 8 1 C8 A A 51 ? ? N9 A A 51 ? ? C4 A A 51 ? ? 108.29 105.80 2.49 0.40 N 9 1 "O4'" A G 59 ? ? "C1'" A G 59 ? ? N9 A G 59 ? ? 112.85 108.50 4.35 0.70 N 10 1 C6 A C 65 ? ? N1 A C 65 ? ? C2 A C 65 ? ? 117.41 120.30 -2.89 0.40 N 11 1 "O4'" B A 29 ? ? "C1'" B A 29 ? ? N9 B A 29 ? ? 113.04 108.50 4.54 0.70 N 12 1 C2 B A 29 ? ? N3 B A 29 ? ? C4 B A 29 ? ? 106.75 110.60 -3.85 0.50 N 13 1 C4 B G 35 ? ? C5 B G 35 ? ? N7 B G 35 ? ? 114.11 110.80 3.31 0.40 N 14 1 N9 B G 35 ? ? C4 B G 35 ? ? C5 B G 35 ? ? 102.40 105.40 -3.00 0.40 N 15 1 C6 B G 35 ? ? C5 B G 35 ? ? N7 B G 35 ? ? 126.36 130.40 -4.04 0.60 N 16 1 N1 B G 35 ? ? C6 B G 35 ? ? O6 B G 35 ? ? 123.88 119.90 3.98 0.60 N 17 1 C5 B G 35 ? ? C6 B G 35 ? ? O6 B G 35 ? ? 123.48 128.60 -5.12 0.60 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 B A 49 ? B A 49 2 1 Y 1 B A 50 ? B A 50 3 1 Y 1 B A 51 ? B A 51 4 1 Y 1 B A 52 ? B A 52 5 1 Y 1 B A 53 ? B A 53 6 1 Y 1 B A 54 ? B A 54 7 1 Y 1 B A 55 ? B A 55 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AMZ O5 O N N 38 AMZ C6 C N N 39 AMZ N2 N N N 40 AMZ C3A C Y N 41 AMZ C7A C Y N 42 AMZ N3 N N N 43 AMZ N1 N Y N 44 AMZ C5 C Y N 45 AMZ N N Y N 46 AMZ C1 C N R 47 AMZ C2 C N R 48 AMZ C3 C N S 49 AMZ O2 O N N 50 AMZ O1 O N N 51 AMZ O O N N 52 AMZ C C N R 53 AMZ C4 C N N 54 AMZ O3 O N N 55 AMZ P P N N 56 AMZ OP1 O N N 57 AMZ O4 O N N 58 AMZ OP2 O N N 59 AMZ H11 H N N 60 AMZ H12 H N N 61 AMZ H9 H N N 62 AMZ H10 H N N 63 AMZ H13 H N N 64 AMZ H2 H N N 65 AMZ H3 H N N 66 AMZ H4 H N N 67 AMZ H5 H N N 68 AMZ H1 H N N 69 AMZ H6 H N N 70 AMZ H7 H N N 71 AMZ H8 H N N 72 AMZ H15 H N N 73 AMZ H14 H N N 74 C OP3 O N N 75 C P P N N 76 C OP1 O N N 77 C OP2 O N N 78 C "O5'" O N N 79 C "C5'" C N N 80 C "C4'" C N R 81 C "O4'" O N N 82 C "C3'" C N S 83 C "O3'" O N N 84 C "C2'" C N R 85 C "O2'" O N N 86 C "C1'" C N R 87 C N1 N N N 88 C C2 C N N 89 C O2 O N N 90 C N3 N N N 91 C C4 C N N 92 C N4 N N N 93 C C5 C N N 94 C C6 C N N 95 C HOP3 H N N 96 C HOP2 H N N 97 C "H5'" H N N 98 C "H5''" H N N 99 C "H4'" H N N 100 C "H3'" H N N 101 C "HO3'" H N N 102 C "H2'" H N N 103 C "HO2'" H N N 104 C "H1'" H N N 105 C H41 H N N 106 C H42 H N N 107 C H5 H N N 108 C H6 H N N 109 G OP3 O N N 110 G P P N N 111 G OP1 O N N 112 G OP2 O N N 113 G "O5'" O N N 114 G "C5'" C N N 115 G "C4'" C N R 116 G "O4'" O N N 117 G "C3'" C N S 118 G "O3'" O N N 119 G "C2'" C N R 120 G "O2'" O N N 121 G "C1'" C N R 122 G N9 N Y N 123 G C8 C Y N 124 G N7 N Y N 125 G C5 C Y N 126 G C6 C N N 127 G O6 O N N 128 G N1 N N N 129 G C2 C N N 130 G N2 N N N 131 G N3 N N N 132 G C4 C Y N 133 G HOP3 H N N 134 G HOP2 H N N 135 G "H5'" H N N 136 G "H5''" H N N 137 G "H4'" H N N 138 G "H3'" H N N 139 G "HO3'" H N N 140 G "H2'" H N N 141 G "HO2'" H N N 142 G "H1'" H N N 143 G H8 H N N 144 G H1 H N N 145 G H21 H N N 146 G H22 H N N 147 HOH O O N N 148 HOH H1 H N N 149 HOH H2 H N N 150 MG MG MG N N 151 U OP3 O N N 152 U P P N N 153 U OP1 O N N 154 U OP2 O N N 155 U "O5'" O N N 156 U "C5'" C N N 157 U "C4'" C N R 158 U "O4'" O N N 159 U "C3'" C N S 160 U "O3'" O N N 161 U "C2'" C N R 162 U "O2'" O N N 163 U "C1'" C N R 164 U N1 N N N 165 U C2 C N N 166 U O2 O N N 167 U N3 N N N 168 U C4 C N N 169 U O4 O N N 170 U C5 C N N 171 U C6 C N N 172 U HOP3 H N N 173 U HOP2 H N N 174 U "H5'" H N N 175 U "H5''" H N N 176 U "H4'" H N N 177 U "H3'" H N N 178 U "HO3'" H N N 179 U "H2'" H N N 180 U "HO2'" H N N 181 U "H1'" H N N 182 U H3 H N N 183 U H5 H N N 184 U H6 H N N 185 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 AMZ O5 C6 doub N N 40 AMZ C6 N2 sing N N 41 AMZ C6 C3A sing N N 42 AMZ N2 H11 sing N N 43 AMZ N2 H12 sing N N 44 AMZ C3A C7A doub Y N 45 AMZ C3A N1 sing Y N 46 AMZ C7A N3 sing N N 47 AMZ C7A N sing Y N 48 AMZ N3 H9 sing N N 49 AMZ N3 H10 sing N N 50 AMZ N1 C5 doub Y N 51 AMZ C5 N sing Y N 52 AMZ C5 H13 sing N N 53 AMZ N C1 sing N N 54 AMZ C1 C2 sing N N 55 AMZ C1 O sing N N 56 AMZ C1 H2 sing N N 57 AMZ C2 C3 sing N N 58 AMZ C2 O1 sing N N 59 AMZ C2 H3 sing N N 60 AMZ C3 O2 sing N N 61 AMZ C3 C sing N N 62 AMZ C3 H4 sing N N 63 AMZ O2 H5 sing N N 64 AMZ O1 H1 sing N N 65 AMZ O C sing N N 66 AMZ C C4 sing N N 67 AMZ C H6 sing N N 68 AMZ C4 O3 sing N N 69 AMZ C4 H7 sing N N 70 AMZ C4 H8 sing N N 71 AMZ O3 P sing N N 72 AMZ P OP1 sing N N 73 AMZ P O4 sing N N 74 AMZ P OP2 doub N N 75 AMZ OP1 H15 sing N N 76 AMZ O4 H14 sing N N 77 C OP3 P sing N N 78 C OP3 HOP3 sing N N 79 C P OP1 doub N N 80 C P OP2 sing N N 81 C P "O5'" sing N N 82 C OP2 HOP2 sing N N 83 C "O5'" "C5'" sing N N 84 C "C5'" "C4'" sing N N 85 C "C5'" "H5'" sing N N 86 C "C5'" "H5''" sing N N 87 C "C4'" "O4'" sing N N 88 C "C4'" "C3'" sing N N 89 C "C4'" "H4'" sing N N 90 C "O4'" "C1'" sing N N 91 C "C3'" "O3'" sing N N 92 C "C3'" "C2'" sing N N 93 C "C3'" "H3'" sing N N 94 C "O3'" "HO3'" sing N N 95 C "C2'" "O2'" sing N N 96 C "C2'" "C1'" sing N N 97 C "C2'" "H2'" sing N N 98 C "O2'" "HO2'" sing N N 99 C "C1'" N1 sing N N 100 C "C1'" "H1'" sing N N 101 C N1 C2 sing N N 102 C N1 C6 sing N N 103 C C2 O2 doub N N 104 C C2 N3 sing N N 105 C N3 C4 doub N N 106 C C4 N4 sing N N 107 C C4 C5 sing N N 108 C N4 H41 sing N N 109 C N4 H42 sing N N 110 C C5 C6 doub N N 111 C C5 H5 sing N N 112 C C6 H6 sing N N 113 G OP3 P sing N N 114 G OP3 HOP3 sing N N 115 G P OP1 doub N N 116 G P OP2 sing N N 117 G P "O5'" sing N N 118 G OP2 HOP2 sing N N 119 G "O5'" "C5'" sing N N 120 G "C5'" "C4'" sing N N 121 G "C5'" "H5'" sing N N 122 G "C5'" "H5''" sing N N 123 G "C4'" "O4'" sing N N 124 G "C4'" "C3'" sing N N 125 G "C4'" "H4'" sing N N 126 G "O4'" "C1'" sing N N 127 G "C3'" "O3'" sing N N 128 G "C3'" "C2'" sing N N 129 G "C3'" "H3'" sing N N 130 G "O3'" "HO3'" sing N N 131 G "C2'" "O2'" sing N N 132 G "C2'" "C1'" sing N N 133 G "C2'" "H2'" sing N N 134 G "O2'" "HO2'" sing N N 135 G "C1'" N9 sing N N 136 G "C1'" "H1'" sing N N 137 G N9 C8 sing Y N 138 G N9 C4 sing Y N 139 G C8 N7 doub Y N 140 G C8 H8 sing N N 141 G N7 C5 sing Y N 142 G C5 C6 sing N N 143 G C5 C4 doub Y N 144 G C6 O6 doub N N 145 G C6 N1 sing N N 146 G N1 C2 sing N N 147 G N1 H1 sing N N 148 G C2 N2 sing N N 149 G C2 N3 doub N N 150 G N2 H21 sing N N 151 G N2 H22 sing N N 152 G N3 C4 sing N N 153 HOH O H1 sing N N 154 HOH O H2 sing N N 155 U OP3 P sing N N 156 U OP3 HOP3 sing N N 157 U P OP1 doub N N 158 U P OP2 sing N N 159 U P "O5'" sing N N 160 U OP2 HOP2 sing N N 161 U "O5'" "C5'" sing N N 162 U "C5'" "C4'" sing N N 163 U "C5'" "H5'" sing N N 164 U "C5'" "H5''" sing N N 165 U "C4'" "O4'" sing N N 166 U "C4'" "C3'" sing N N 167 U "C4'" "H4'" sing N N 168 U "O4'" "C1'" sing N N 169 U "C3'" "O3'" sing N N 170 U "C3'" "C2'" sing N N 171 U "C3'" "H3'" sing N N 172 U "O3'" "HO3'" sing N N 173 U "C2'" "O2'" sing N N 174 U "C2'" "C1'" sing N N 175 U "C2'" "H2'" sing N N 176 U "O2'" "HO2'" sing N N 177 U "C1'" N1 sing N N 178 U "C1'" "H1'" sing N N 179 U N1 C2 sing N N 180 U N1 C6 sing N N 181 U C2 O2 doub N N 182 U C2 N3 sing N N 183 U N3 C4 sing N N 184 U N3 H3 sing N N 185 U C4 O4 doub N N 186 U C4 C5 sing N N 187 U C5 C6 doub N N 188 U C5 H5 sing N N 189 U C6 H6 sing N N 190 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4ZNP 'double helix' 4ZNP 'a-form double helix' 4ZNP 'hairpin loop' 4ZNP 'bulge loop' 4ZNP 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A C 47 1_555 -0.959 -0.008 0.633 8.481 -16.321 15.249 1 A_G2:C47_A A 2 ? A 47 ? ? 1 1 A G 3 1_555 A C 46 1_555 0.211 -0.009 0.562 2.723 -6.521 -13.639 2 A_G3:C46_A A 3 ? A 46 ? 19 1 1 A A 4 1_555 A U 45 1_555 -0.888 -0.180 0.052 13.098 6.978 5.193 3 A_A4:U45_A A 4 ? A 45 ? 20 1 1 A U 5 1_555 A A 44 1_555 -0.049 -0.317 0.599 4.884 -16.311 -0.115 4 A_U5:A44_A A 5 ? A 44 ? 20 1 1 A A 6 1_555 A U 43 1_555 -1.391 0.050 0.247 1.860 -18.403 -8.345 5 A_A6:U43_A A 6 ? A 43 ? ? ? 1 A C 7 1_555 A G 42 1_555 -0.926 0.331 0.345 6.055 -18.396 -7.701 6 A_C7:G42_A A 7 ? A 42 ? 19 1 1 A A 8 1_555 A U 41 1_555 0.427 0.090 0.056 -3.929 -15.028 -9.768 7 A_A8:U41_A A 8 ? A 41 ? 20 1 1 A G 9 1_555 A C 40 1_555 -0.533 0.081 -0.051 -11.448 -14.960 -3.295 8 A_G9:C40_A A 9 ? A 40 ? 19 1 1 A G 10 1_555 A A 39 1_555 6.947 -3.730 -0.286 -6.504 -10.282 1.851 9 A_G10:A39_A A 10 ? A 39 ? 11 9 1 A A 11 1_555 A G 38 1_555 -7.116 -4.400 0.327 4.421 -5.587 -13.940 10 A_A11:G38_A A 11 ? A 38 ? ? 10 1 A C 12 1_555 A G 37 1_555 -0.497 -0.060 -0.100 10.138 -1.249 -0.529 11 A_C12:G37_A A 12 ? A 37 ? 19 1 1 A U 13 1_555 A U 36 1_555 2.333 -1.909 0.459 14.764 -10.842 11.719 12 A_U13:U36_A A 13 ? A 36 ? 16 1 1 A G 23 1_555 A C 34 1_555 -0.618 -0.054 -0.145 -9.589 -10.035 8.552 13 A_G23:C34_A A 23 ? A 34 ? 19 1 1 A U 24 1_555 A A 33 1_555 0.382 -0.223 0.228 -10.475 -4.710 2.771 14 A_U24:A33_A A 24 ? A 33 ? 20 1 1 A G 25 1_555 A C 32 1_555 0.592 -0.263 0.015 -4.650 -6.312 -1.917 15 A_G25:C32_A A 25 ? A 32 ? 19 1 1 A G 26 1_555 A C 31 1_555 0.615 0.017 0.014 -8.246 -8.316 -2.683 16 A_G26:C31_A A 26 ? A 31 ? 19 1 1 A G 27 1_555 B A 29 1_555 7.138 -2.084 -0.004 7.768 24.697 25.878 17 A_G27:A29_B A 27 ? B 29 ? ? ? 1 A G 14 1_555 A C 65 1_555 -0.418 -0.240 -0.018 -8.308 -19.175 4.410 18 A_G14:C65_A A 14 ? A 65 ? 19 1 1 A G 15 1_555 A C 64 1_555 -0.273 -0.274 0.047 -6.765 -10.935 -3.112 19 A_G15:C64_A A 15 ? A 64 ? 19 1 1 A C 16 1_555 A G 63 1_555 0.348 -0.343 0.178 -1.949 -12.865 3.931 20 A_C16:G63_A A 16 ? A 63 ? 19 1 1 A G 17 1_555 A C 62 1_555 -0.169 -0.187 0.398 -1.670 -13.128 3.126 21 A_G17:C62_A A 17 ? A 62 ? 19 1 1 A G 18 1_555 A C 61 1_555 0.046 -0.059 0.149 -2.230 -8.687 3.547 22 A_G18:C61_A A 18 ? A 61 ? 19 1 1 A A 29 1_555 B G 27 1_555 -6.891 -2.026 -0.107 -3.475 18.397 27.354 23 A_A29:G27_B A 29 ? B 27 ? ? ? 1 B C 31 1_555 B G 26 1_555 -0.188 -0.016 -0.031 6.043 -10.917 -5.410 24 B_C31:G26_B B 31 ? B 26 ? 19 1 1 B C 32 1_555 B G 25 1_555 -0.252 -0.237 0.101 0.401 -11.409 -1.977 25 B_C32:G25_B B 32 ? B 25 ? 19 1 1 B A 33 1_555 B U 24 1_555 1.002 -0.006 -0.387 4.102 -15.668 -4.193 26 B_A33:U24_B B 33 ? B 24 ? 20 1 1 B C 34 1_555 B G 23 1_555 0.457 0.257 -0.538 20.731 -5.420 9.367 27 B_C34:G23_B B 34 ? B 23 ? ? 1 1 A G 56 1_555 A C 70 1_555 -1.167 -0.333 0.107 8.630 -10.183 -5.980 28 A_G56:C70_A A 56 ? A 70 ? 19 1 1 A C 57 1_555 A G 69 1_555 0.342 -0.245 -0.371 6.358 -15.137 -5.650 29 A_C57:G69_A A 57 ? A 69 ? 19 1 1 A C 58 1_555 A G 68 1_555 -0.064 -0.300 0.261 3.762 9.711 -2.923 30 A_C58:G68_A A 58 ? A 68 ? 19 1 1 A G 59 1_555 A G 67 1_555 -2.083 -2.037 0.985 0.257 -44.036 127.733 31 A_G59:G67_A A 59 ? A 67 ? ? 1 1 B U 5 1_555 B A 44 1_555 0.510 -0.052 -0.436 -17.285 -33.995 -17.282 32 B_U5:A44_B B 5 ? B 44 ? 20 1 1 B C 7 1_555 B G 42 1_555 -1.177 0.214 -0.589 24.619 -41.521 -26.499 33 B_C7:G42_B B 7 ? B 42 ? ? 1 1 B A 8 1_555 B U 41 1_555 -0.224 0.422 -0.482 -8.065 -23.325 14.650 34 B_A8:U41_B B 8 ? B 41 ? ? ? 1 B G 9 1_555 B C 40 1_555 -0.537 0.232 -0.327 -8.573 -11.035 10.772 35 B_G9:C40_B B 9 ? B 40 ? ? 1 1 B G 10 1_555 B A 39 1_555 6.751 -4.042 0.016 -4.604 -17.280 4.698 36 B_G10:A39_B B 10 ? B 39 ? 11 9 1 B A 11 1_555 B G 38 1_555 -6.685 -3.897 -0.035 5.078 -9.926 -8.426 37 B_A11:G38_B B 11 ? B 38 ? 11 9 1 B C 12 1_555 B G 37 1_555 -0.002 -0.131 -0.214 14.406 -10.287 -0.848 38 B_C12:G37_B B 12 ? B 37 ? 19 1 1 B G 14 1_555 B C 65 1_555 0.586 0.387 0.242 -3.564 -2.149 5.165 39 B_G14:C65_B B 14 ? B 65 ? ? 1 1 B G 15 1_555 B C 64 1_555 0.463 -0.095 0.972 12.768 -4.462 -0.930 40 B_G15:C64_B B 15 ? B 64 ? 19 1 1 B C 16 1_555 B G 63 1_555 0.493 -0.033 1.031 3.553 -8.165 2.527 41 B_C16:G63_B B 16 ? B 63 ? 19 1 1 B G 17 1_555 B C 62 1_555 0.701 -0.089 -0.504 0.094 -4.046 -3.820 42 B_G17:C62_B B 17 ? B 62 ? 19 1 1 B G 18 1_555 B C 61 1_555 0.473 0.720 -0.249 -4.255 -8.805 8.884 43 B_G18:C61_B B 18 ? B 61 ? ? ? 1 B G 56 1_555 B C 70 1_555 -0.170 0.671 -0.090 8.344 -17.635 9.234 44 B_G56:C70_B B 56 ? B 70 ? ? ? 1 B C 57 1_555 B G 69 1_555 -0.963 -0.214 -0.730 -2.440 -20.939 -7.429 45 B_C57:G69_B B 57 ? B 69 ? ? 1 1 B C 58 1_555 B G 68 1_555 0.246 0.056 0.135 6.537 4.309 0.302 46 B_C58:G68_B B 58 ? B 68 ? 19 1 1 B G 59 1_555 B G 67 1_555 -2.064 -2.410 0.822 25.964 -46.189 125.592 47 B_G59:G67_B B 59 ? B 67 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A C 47 1_555 A G 3 1_555 A C 46 1_555 -1.236 -2.088 3.264 -1.112 5.249 37.347 -3.882 1.774 2.988 8.144 1.725 37.717 1 AA_G2G3:C46C47_AA A 2 ? A 47 ? A 3 ? A 46 ? 1 A G 3 1_555 A C 46 1_555 A A 4 1_555 A U 45 1_555 0.592 -1.980 2.934 3.044 18.127 25.792 -6.075 -0.678 1.345 35.443 -5.953 31.580 2 AA_G3A4:U45C46_AA A 3 ? A 46 ? A 4 ? A 45 ? 1 A A 4 1_555 A U 45 1_555 A U 5 1_555 A A 44 1_555 0.087 -1.499 3.582 -3.814 -4.445 36.848 -1.684 -0.702 3.705 -6.977 5.987 37.295 3 AA_A4U5:A44U45_AA A 4 ? A 45 ? A 5 ? A 44 ? 1 A U 5 1_555 A A 44 1_555 A A 6 1_555 A U 43 1_555 -0.085 -1.368 3.113 -1.235 11.149 28.328 -4.562 -0.054 2.416 21.734 2.407 30.426 4 AA_U5A6:U43A44_AA A 5 ? A 44 ? A 6 ? A 43 ? 1 A A 6 1_555 A U 43 1_555 A C 7 1_555 A G 42 1_555 -0.054 -2.156 3.116 -2.180 4.965 28.048 -5.383 -0.335 2.699 10.124 4.445 28.557 5 AA_A6C7:G42U43_AA A 6 ? A 43 ? A 7 ? A 42 ? 1 A C 7 1_555 A G 42 1_555 A A 8 1_555 A U 41 1_555 0.436 -1.470 3.493 0.957 4.852 40.235 -2.687 -0.519 3.311 7.022 -1.384 40.525 6 AA_C7A8:U41G42_AA A 7 ? A 42 ? A 8 ? A 41 ? 1 A A 8 1_555 A U 41 1_555 A G 9 1_555 A C 40 1_555 0.760 -1.737 3.340 2.325 11.329 27.641 -5.548 -1.024 2.504 22.504 -4.619 29.919 7 AA_A8G9:C40U41_AA A 8 ? A 41 ? A 9 ? A 40 ? 1 A G 9 1_555 A C 40 1_555 A G 10 1_555 A A 39 1_555 -0.014 -0.325 3.378 1.677 -1.966 68.986 -0.213 0.076 3.384 -1.735 -1.480 69.028 8 AA_G9G10:A39C40_AA A 9 ? A 40 ? A 10 ? A 39 ? 1 A G 10 1_555 A A 39 1_555 A A 11 1_555 A G 38 1_555 -0.707 -1.458 3.208 -4.738 1.240 -34.531 2.250 -1.881 3.136 -2.076 -7.933 -34.866 9 AA_G10A11:G38A39_AA A 10 ? A 39 ? A 11 ? A 38 ? 1 A A 11 1_555 A G 38 1_555 A C 12 1_555 A G 37 1_555 0.660 -0.585 3.264 0.003 4.178 61.643 -0.763 -0.643 3.222 4.072 -0.003 61.771 10 AA_A11C12:G37G38_AA A 11 ? A 38 ? A 12 ? A 37 ? 1 A C 12 1_555 A G 37 1_555 A U 13 1_555 A U 36 1_555 1.626 -1.820 2.984 -2.488 6.639 36.926 -3.560 -2.800 2.520 10.364 3.883 37.578 11 AA_C12U13:U36G37_AA A 12 ? A 37 ? A 13 ? A 36 ? 1 A U 13 1_555 A U 36 1_555 A G 23 1_555 A C 34 1_555 -3.054 -0.879 6.786 -4.255 12.746 87.279 -1.196 2.008 6.751 9.189 3.067 88.101 12 AA_U13G23:C34U36_AA A 13 ? A 36 ? A 23 ? A 34 ? 1 A G 23 1_555 A C 34 1_555 A U 24 1_555 A A 33 1_555 -0.608 -1.073 3.284 -3.467 7.359 35.535 -2.720 0.501 3.052 11.867 5.590 36.425 13 AA_G23U24:A33C34_AA A 23 ? A 34 ? A 24 ? A 33 ? 1 A U 24 1_555 A A 33 1_555 A G 25 1_555 A C 32 1_555 0.066 -1.386 2.904 4.202 12.089 32.894 -3.761 0.402 2.262 20.412 -7.095 35.232 14 AA_U24G25:C32A33_AA A 24 ? A 33 ? A 25 ? A 32 ? 1 A G 25 1_555 A C 32 1_555 A G 26 1_555 A C 31 1_555 0.708 -1.849 3.320 4.096 9.232 33.264 -4.449 -0.587 2.788 15.683 -6.957 34.722 15 AA_G25G26:C31C32_AA A 25 ? A 32 ? A 26 ? A 31 ? 1 A G 26 1_555 A C 31 1_555 A G 27 1_555 B A 29 1_555 -4.019 -0.955 2.716 -3.779 -5.719 2.980 20.202 12.636 3.846 -55.508 36.684 7.474 16 AA_G26G27:A29C31_BA A 26 ? A 31 ? A 27 ? B 29 ? 1 A G 14 1_555 A C 65 1_555 A G 15 1_555 A C 64 1_555 -1.200 -2.363 2.990 -7.361 8.246 28.477 -5.906 1.017 2.454 16.020 14.301 30.505 17 AA_G14G15:C64C65_AA A 14 ? A 65 ? A 15 ? A 64 ? 1 A G 15 1_555 A C 64 1_555 A C 16 1_555 A G 63 1_555 0.387 -1.169 3.109 -0.208 6.243 35.720 -2.686 -0.650 2.869 10.082 0.336 36.244 18 AA_G15C16:G63C64_AA A 15 ? A 64 ? A 16 ? A 63 ? 1 A C 16 1_555 A G 63 1_555 A G 17 1_555 A C 62 1_555 0.330 -1.687 2.913 -0.013 10.684 29.039 -4.830 -0.622 2.171 20.453 0.025 30.902 19 AA_C16G17:C62G63_AA A 16 ? A 63 ? A 17 ? A 62 ? 1 A G 17 1_555 A C 62 1_555 A G 18 1_555 A C 61 1_555 0.512 -1.821 3.172 6.082 8.042 31.809 -4.405 0.036 2.694 14.233 -10.765 33.329 20 AA_G17G18:C61C62_AA A 17 ? A 62 ? A 18 ? A 61 ? 1 A A 29 1_555 B G 27 1_555 B C 31 1_555 B G 26 1_555 3.197 -1.074 3.065 -3.164 5.397 4.394 -17.289 -29.395 -0.317 47.403 27.792 7.643 21 AB_A29C31:G26G27_BB A 29 ? B 27 ? B 31 ? B 26 ? 1 B C 31 1_555 B G 26 1_555 B C 32 1_555 B G 25 1_555 -0.778 -1.976 3.328 -5.908 4.662 33.634 -4.061 0.396 3.122 7.933 10.054 34.442 22 BB_C31C32:G25G26_BB B 31 ? B 26 ? B 32 ? B 25 ? 1 B C 32 1_555 B G 25 1_555 B A 33 1_555 B U 24 1_555 -0.279 -1.106 3.260 2.612 6.865 38.949 -2.408 0.708 3.006 10.186 -3.876 39.609 23 BB_C32A33:U24G25_BB B 32 ? B 25 ? B 33 ? B 24 ? 1 B A 33 1_555 B U 24 1_555 B C 34 1_555 B G 23 1_555 1.511 -1.354 2.843 4.882 2.377 25.542 -3.576 -2.155 2.939 5.299 -10.885 26.104 24 BB_A33C34:G23U24_BB B 33 ? B 24 ? B 34 ? B 23 ? 1 A G 56 1_555 A C 70 1_555 A C 57 1_555 A G 69 1_555 -0.502 -1.717 3.354 2.194 -2.538 44.780 -2.011 0.863 3.415 -3.326 -2.875 44.899 25 AA_G56C57:G69C70_AA A 56 ? A 70 ? A 57 ? A 69 ? 1 A C 57 1_555 A G 69 1_555 A C 58 1_555 A G 68 1_555 -0.280 -2.150 3.483 -4.752 13.937 28.770 -6.174 -0.281 2.247 26.009 8.867 32.248 26 AA_C57C58:G68G69_AA A 57 ? A 69 ? A 58 ? A 68 ? 1 A C 58 1_555 A G 68 1_555 A G 59 1_555 A G 67 1_555 -1.616 -2.658 -0.783 -160.249 58.688 52.351 -1.269 0.982 0.195 30.240 82.572 171.617 27 AA_C58G59:G67G68_AA A 58 ? A 68 ? A 59 ? A 67 ? 1 B U 5 1_555 B A 44 1_555 B C 7 1_555 B G 42 1_555 -0.917 -3.019 5.588 -7.712 10.799 53.865 -4.294 0.242 5.022 11.722 8.371 55.357 28 BB_U5C7:G42A44_BB B 5 ? B 44 ? B 7 ? B 42 ? 1 B C 7 1_555 B G 42 1_555 B A 8 1_555 B U 41 1_555 2.012 -1.066 4.358 2.977 16.177 38.887 -3.657 -2.402 3.782 23.083 -4.248 42.099 29 BB_C7A8:U41G42_BB B 7 ? B 42 ? B 8 ? B 41 ? 1 B A 8 1_555 B U 41 1_555 B G 9 1_555 B C 40 1_555 0.224 -1.272 3.182 -4.169 8.638 22.847 -5.325 -1.660 2.465 20.675 9.979 24.754 30 BB_A8G9:C40U41_BB B 8 ? B 41 ? B 9 ? B 40 ? 1 B G 9 1_555 B C 40 1_555 B G 10 1_555 B A 39 1_555 -0.503 -0.075 3.305 -1.031 1.743 70.117 -0.127 0.401 3.309 1.517 0.897 70.143 31 BB_G9G10:A39C40_BB B 9 ? B 40 ? B 10 ? B 39 ? 1 B G 10 1_555 B A 39 1_555 B A 11 1_555 B G 38 1_555 -1.127 -1.288 3.111 -1.514 6.784 -36.131 1.136 -1.989 3.243 -10.815 -2.413 -36.772 32 BB_G10A11:G38A39_BB B 10 ? B 39 ? B 11 ? B 38 ? 1 B A 11 1_555 B G 38 1_555 B C 12 1_555 B G 37 1_555 0.428 -0.515 3.239 -3.250 1.366 64.148 -0.542 -0.540 3.206 1.285 3.058 64.234 33 BB_A11C12:G37G38_BB B 11 ? B 38 ? B 12 ? B 37 ? 1 B G 14 1_555 B C 65 1_555 B G 15 1_555 B C 64 1_555 -1.362 -2.860 2.453 -8.864 4.442 27.508 -6.393 1.260 2.292 8.979 17.919 29.207 34 BB_G14G15:C64C65_BB B 14 ? B 65 ? B 15 ? B 64 ? 1 B G 15 1_555 B C 64 1_555 B C 16 1_555 B G 63 1_555 0.035 -1.648 3.367 -1.010 7.859 33.667 -3.957 -0.211 2.918 13.340 1.714 34.560 35 BB_G15C16:G63C64_BB B 15 ? B 64 ? B 16 ? B 63 ? 1 B C 16 1_555 B G 63 1_555 B G 17 1_555 B C 62 1_555 -0.622 -1.667 3.198 6.809 9.994 32.727 -4.136 1.960 2.427 17.029 -11.603 34.833 36 BB_C16G17:C62G63_BB B 16 ? B 63 ? B 17 ? B 62 ? 1 B G 17 1_555 B C 62 1_555 B G 18 1_555 B C 61 1_555 1.427 -2.057 3.397 2.192 6.901 28.575 -5.493 -2.346 2.929 13.706 -4.354 29.459 37 BB_G17G18:C61C62_BB B 17 ? B 62 ? B 18 ? B 61 ? 1 B G 56 1_555 B C 70 1_555 B C 57 1_555 B G 69 1_555 -1.295 -2.013 3.544 1.607 -3.315 35.761 -2.741 2.352 3.650 -5.380 -2.608 35.944 38 BB_G56C57:G69C70_BB B 56 ? B 70 ? B 57 ? B 69 ? 1 B C 57 1_555 B G 69 1_555 B C 58 1_555 B G 68 1_555 0.960 -1.486 3.254 -5.464 7.810 36.082 -3.285 -2.174 2.716 12.346 8.638 37.280 39 BB_C57C58:G68G69_BB B 57 ? B 69 ? B 58 ? B 68 ? 1 B C 58 1_555 B G 68 1_555 B G 59 1_555 B G 67 1_555 -1.191 -2.939 -0.416 -153.351 61.173 22.011 -1.408 0.785 -0.063 32.817 82.266 165.378 40 BB_C58G59:G67G68_BB B 58 ? B 68 ? B 59 ? B 67 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' 'NIH U19 CA179564' 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'P41 GM103403' 2 'NIH-ORIP HEI grant' 'United States' 'S10 RR029205' 3 # _atom_sites.entry_id 4ZNP _atom_sites.fract_transf_matrix[1][1] 0.006571 _atom_sites.fract_transf_matrix[1][2] 0.003793 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007587 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011509 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_