HEADER TRANSFERASE 06-MAY-15 4ZOG TITLE VX-680/MK-0457 BINDS TO HUMAN ABL1 ALSO IN INACTIVE DFG CONFORMATIONS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN KINASE ABL1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 229-511; COMPND 5 SYNONYM: ABELSON MURINE LEUKEMIA VIRAL ONCOGENE HOMOLOG 1,ABELSON COMPND 6 TYROSINE-PROTEIN KINASE 1,PROTO-ONCOGENE C-ABL,P150; COMPND 7 EC: 2.7.10.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ABL1, ABL, JTK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: STAR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-TEV KEYWDS KINASE, TRANSFERASE, ABL1, DFG CONFORMATIONS EXPDTA X-RAY DIFFRACTION AUTHOR P.KYOMUHENDO,D.NARAYANAN,R.A.ENGH REVDAT 3 10-JAN-24 4ZOG 1 REMARK REVDAT 2 19-OCT-16 4ZOG 1 REVDAT 1 14-SEP-16 4ZOG 0 JRNL AUTH P.KYOMUHENDO,D.NARAYANAN,R.A.ENGH JRNL TITL VX-680/MK-0457 BINDS ALSO TO HUMAN ABL1 WITH INACTIVE DFG JRNL TITL 2 CONFORMATIONS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 36049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.0092 - 5.4035 0.97 2754 145 0.1732 0.1941 REMARK 3 2 5.4035 - 4.2902 1.00 2691 141 0.1461 0.1778 REMARK 3 3 4.2902 - 3.7482 1.00 2653 140 0.1536 0.2276 REMARK 3 4 3.7482 - 3.4057 1.00 2662 140 0.1689 0.2131 REMARK 3 5 3.4057 - 3.1617 1.00 2613 137 0.1999 0.2539 REMARK 3 6 3.1617 - 2.9753 1.00 2622 138 0.2103 0.2788 REMARK 3 7 2.9753 - 2.8263 1.00 2615 138 0.1964 0.2619 REMARK 3 8 2.8263 - 2.7033 1.00 2630 139 0.2008 0.2316 REMARK 3 9 2.7033 - 2.5993 1.00 2598 136 0.2051 0.2295 REMARK 3 10 2.5993 - 2.5096 1.00 2619 138 0.2152 0.2921 REMARK 3 11 2.5096 - 2.4311 1.00 2608 137 0.2317 0.3156 REMARK 3 12 2.4311 - 2.3616 1.00 2559 135 0.2408 0.3084 REMARK 3 13 2.3616 - 2.2995 1.00 2623 138 0.2480 0.3046 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.490 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4464 REMARK 3 ANGLE : 1.100 6044 REMARK 3 CHIRALITY : 0.041 645 REMARK 3 PLANARITY : 0.005 760 REMARK 3 DIHEDRAL : 17.271 1629 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 264 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7681 18.8470 5.5250 REMARK 3 T TENSOR REMARK 3 T11: 0.4130 T22: 0.3613 REMARK 3 T33: 0.2181 T12: 0.0925 REMARK 3 T13: 0.0231 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.1418 L22: 0.3513 REMARK 3 L33: 0.1775 L12: 0.2275 REMARK 3 L13: 0.0678 L23: 0.1760 REMARK 3 S TENSOR REMARK 3 S11: -0.1852 S12: -0.2027 S13: 0.1068 REMARK 3 S21: 0.0380 S22: 0.0694 S23: 0.0091 REMARK 3 S31: -0.3047 S32: -0.1192 S33: 0.0001 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 265 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.9905 20.9767 -2.4072 REMARK 3 T TENSOR REMARK 3 T11: 0.2433 T22: 0.2397 REMARK 3 T33: 0.1793 T12: 0.0806 REMARK 3 T13: -0.0135 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.4991 L22: 0.0404 REMARK 3 L33: 0.2197 L12: -0.1379 REMARK 3 L13: -0.0677 L23: -0.0477 REMARK 3 S TENSOR REMARK 3 S11: -0.2413 S12: -0.0236 S13: 0.0474 REMARK 3 S21: 0.2910 S22: 0.1233 S23: 0.0511 REMARK 3 S31: 0.0590 S32: -0.2531 S33: -0.0113 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 311 THROUGH 444 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9054 11.3138 -16.5217 REMARK 3 T TENSOR REMARK 3 T11: 0.1601 T22: 0.1481 REMARK 3 T33: 0.1687 T12: 0.0516 REMARK 3 T13: 0.0060 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.5742 L22: 0.2769 REMARK 3 L33: 0.8812 L12: -0.4305 REMARK 3 L13: 0.0777 L23: 0.1083 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: 0.0771 S13: -0.0135 REMARK 3 S21: 0.0656 S22: 0.0462 S23: -0.0003 REMARK 3 S31: -0.0766 S32: -0.0902 S33: -0.0006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 445 THROUGH 501 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3582 4.6298 -28.7318 REMARK 3 T TENSOR REMARK 3 T11: 0.1522 T22: 0.2204 REMARK 3 T33: 0.1446 T12: 0.0104 REMARK 3 T13: -0.0039 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.6896 L22: 0.4735 REMARK 3 L33: 0.5676 L12: -0.3418 REMARK 3 L13: -0.2186 L23: 0.3631 REMARK 3 S TENSOR REMARK 3 S11: -0.0207 S12: 0.3085 S13: -0.1069 REMARK 3 S21: -0.1087 S22: -0.0239 S23: -0.0237 REMARK 3 S31: 0.1627 S32: -0.2159 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 234 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7413 57.9293 -11.6906 REMARK 3 T TENSOR REMARK 3 T11: 0.2843 T22: 0.4547 REMARK 3 T33: 0.6562 T12: -0.0617 REMARK 3 T13: 0.0582 T23: 0.0568 REMARK 3 L TENSOR REMARK 3 L11: 0.2344 L22: 0.2621 REMARK 3 L33: 0.1131 L12: 0.2052 REMARK 3 L13: 0.1994 L23: 0.0998 REMARK 3 S TENSOR REMARK 3 S11: 0.1081 S12: -0.0869 S13: 0.5197 REMARK 3 S21: -0.0522 S22: -0.2559 S23: -0.2881 REMARK 3 S31: -0.3991 S32: 0.1229 S33: -0.0015 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2647 44.6654 -12.7552 REMARK 3 T TENSOR REMARK 3 T11: 0.1799 T22: 0.2467 REMARK 3 T33: 0.2987 T12: 0.0176 REMARK 3 T13: -0.0130 T23: 0.0658 REMARK 3 L TENSOR REMARK 3 L11: 0.6032 L22: 0.3182 REMARK 3 L33: 0.2021 L12: -0.3611 REMARK 3 L13: -0.1803 L23: 0.0780 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: 0.1654 S13: 0.1314 REMARK 3 S21: 0.0456 S22: -0.0371 S23: -0.2988 REMARK 3 S31: -0.0005 S32: 0.1569 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 380 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5914 58.0655 -3.1099 REMARK 3 T TENSOR REMARK 3 T11: 0.6436 T22: 0.2752 REMARK 3 T33: 0.4321 T12: 0.0343 REMARK 3 T13: -0.0678 T23: -0.0804 REMARK 3 L TENSOR REMARK 3 L11: 0.0470 L22: 0.0103 REMARK 3 L33: 0.0690 L12: 0.0180 REMARK 3 L13: 0.0638 L23: 0.0457 REMARK 3 S TENSOR REMARK 3 S11: -0.1286 S12: -0.1065 S13: 0.2379 REMARK 3 S21: 0.1434 S22: 0.0037 S23: 0.0366 REMARK 3 S31: -0.2676 S32: 0.0921 S33: 0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 402 THROUGH 503 ) REMARK 3 ORIGIN FOR THE GROUP (A): -46.3162 44.8399 -12.9513 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.1423 REMARK 3 T33: 0.1846 T12: 0.0318 REMARK 3 T13: -0.0134 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.6261 L22: 0.5108 REMARK 3 L33: 0.4620 L12: -0.1199 REMARK 3 L13: 0.2797 L23: -0.4833 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: 0.0462 S13: 0.0266 REMARK 3 S21: 0.0269 S22: -0.0680 S23: -0.0158 REMARK 3 S31: 0.0081 S32: -0.0128 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209588. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91705 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JULY 4, 2012 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36095 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.090 REMARK 200 R MERGE (I) : 0.10030 REMARK 200 R SYM (I) : 0.10000 REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.78400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.9_1692 REMARK 200 STARTING MODEL: 2G2H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME2000 (31% W/V), MES (100 MM, PH REMARK 280 6.5) AND SODIUM ACETATE (260MM)., PH 6.6, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 52.96850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.21250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 52.96850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.21250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 229 REMARK 465 PRO A 230 REMARK 465 ASN A 231 REMARK 465 TYR A 232 REMARK 465 ILE A 502 REMARK 465 SER A 503 REMARK 465 ASP A 504 REMARK 465 GLU A 505 REMARK 465 VAL A 506 REMARK 465 GLU A 507 REMARK 465 LYS A 508 REMARK 465 GLU A 509 REMARK 465 LEU A 510 REMARK 465 GLY A 511 REMARK 465 SER B 229 REMARK 465 PRO B 230 REMARK 465 ASN B 231 REMARK 465 TYR B 232 REMARK 465 ASP B 233 REMARK 465 HIS B 396 REMARK 465 ALA B 397 REMARK 465 ASP B 504 REMARK 465 GLU B 505 REMARK 465 VAL B 506 REMARK 465 GLU B 507 REMARK 465 LYS B 508 REMARK 465 GLU B 509 REMARK 465 LEU B 510 REMARK 465 GLY B 511 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 276 CG OD1 OD2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 THR B 240 OG1 CG2 REMARK 470 ASP B 241 CG OD1 OD2 REMARK 470 ILE B 242 CG1 CG2 CD1 REMARK 470 THR B 243 OG1 CG2 REMARK 470 LYS B 245 CG CD CE NZ REMARK 470 TYR B 257 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP B 261 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 261 CZ3 CH2 REMARK 470 LYS B 262 CB CG CD CE NZ REMARK 470 LYS B 263 CG CD CE NZ REMARK 470 SER B 265 OG REMARK 470 LEU B 266 CG CD1 CD2 REMARK 470 LYS B 274 CG CD CE NZ REMARK 470 GLU B 275 CG CD OE1 OE2 REMARK 470 LYS B 285 CG CD CE NZ REMARK 470 ILE B 293 CG1 CG2 CD1 REMARK 470 VAL B 304 CG1 CG2 REMARK 470 ARG B 307 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 308 CG CD OE1 OE2 REMARK 470 PHE B 311 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 312 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 THR B 319 OG1 CG2 REMARK 470 GLU B 373 CG CD OE1 OE2 REMARK 470 ARG B 386 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 470 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 307 -81.57 -87.53 REMARK 500 ASP A 363 45.09 -142.02 REMARK 500 TYR A 440 58.30 36.60 REMARK 500 HIS B 246 161.52 179.20 REMARK 500 ASP B 276 78.64 -106.36 REMARK 500 ARG B 362 -2.86 77.42 REMARK 500 ASP B 363 43.87 -148.39 REMARK 500 PHE B 382 -111.34 -59.71 REMARK 500 ALA B 399 -169.25 -79.12 REMARK 500 ASP B 455 12.65 81.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VX6 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MXE A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MXE A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue VX6 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MES B 602 DBREF 4ZOG A 229 511 UNP P00519 ABL1_HUMAN 229 511 DBREF 4ZOG B 229 511 UNP P00519 ABL1_HUMAN 229 511 SEQRES 1 A 283 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 A 283 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 A 283 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 A 283 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 A 283 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 A 283 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 A 283 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 A 283 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 A 283 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 A 283 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 A 283 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 A 283 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 A 283 SER ARG LEU MET THR GLY ASP THR TYR THR ALA HIS ALA SEQRES 14 A 283 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 A 283 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 A 283 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 A 283 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 A 283 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 A 283 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 A 283 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 A 283 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SER SER SEQRES 22 A 283 ILE SER ASP GLU VAL GLU LYS GLU LEU GLY SEQRES 1 B 283 SER PRO ASN TYR ASP LYS TRP GLU MET GLU ARG THR ASP SEQRES 2 B 283 ILE THR MET LYS HIS LYS LEU GLY GLY GLY GLN TYR GLY SEQRES 3 B 283 GLU VAL TYR GLU GLY VAL TRP LYS LYS TYR SER LEU THR SEQRES 4 B 283 VAL ALA VAL LYS THR LEU LYS GLU ASP THR MET GLU VAL SEQRES 5 B 283 GLU GLU PHE LEU LYS GLU ALA ALA VAL MET LYS GLU ILE SEQRES 6 B 283 LYS HIS PRO ASN LEU VAL GLN LEU LEU GLY VAL CYS THR SEQRES 7 B 283 ARG GLU PRO PRO PHE TYR ILE ILE THR GLU PHE MET THR SEQRES 8 B 283 TYR GLY ASN LEU LEU ASP TYR LEU ARG GLU CYS ASN ARG SEQRES 9 B 283 GLN GLU VAL ASN ALA VAL VAL LEU LEU TYR MET ALA THR SEQRES 10 B 283 GLN ILE SER SER ALA MET GLU TYR LEU GLU LYS LYS ASN SEQRES 11 B 283 PHE ILE HIS ARG ASP LEU ALA ALA ARG ASN CYS LEU VAL SEQRES 12 B 283 GLY GLU ASN HIS LEU VAL LYS VAL ALA ASP PHE GLY LEU SEQRES 13 B 283 SER ARG LEU MET THR GLY ASP THR TYR THR ALA HIS ALA SEQRES 14 B 283 GLY ALA LYS PHE PRO ILE LYS TRP THR ALA PRO GLU SER SEQRES 15 B 283 LEU ALA TYR ASN LYS PHE SER ILE LYS SER ASP VAL TRP SEQRES 16 B 283 ALA PHE GLY VAL LEU LEU TRP GLU ILE ALA THR TYR GLY SEQRES 17 B 283 MET SER PRO TYR PRO GLY ILE ASP LEU SER GLN VAL TYR SEQRES 18 B 283 GLU LEU LEU GLU LYS ASP TYR ARG MET GLU ARG PRO GLU SEQRES 19 B 283 GLY CYS PRO GLU LYS VAL TYR GLU LEU MET ARG ALA CYS SEQRES 20 B 283 TRP GLN TRP ASN PRO SER ASP ARG PRO SER PHE ALA GLU SEQRES 21 B 283 ILE HIS GLN ALA PHE GLU THR MET PHE GLN GLU SER SER SEQRES 22 B 283 ILE SER ASP GLU VAL GLU LYS GLU LEU GLY HET VX6 A 601 33 HET MXE A 602 12 HET MXE A 603 12 HET MXE A 604 12 HET VX6 B 601 33 HET MES B 602 25 HETNAM VX6 CYCLOPROPANECARBOXYLIC ACID {4-[4-(4-METHYL-PIPERAZIN- HETNAM 2 VX6 1-YL)-6-(5-METHYL-2H-PYRAZOL-3-YLAMINO)-PYRIMIDIN-2- HETNAM 3 VX6 YLSULFANYL]-PHENYL}-AMIDE HETNAM MXE 2-METHOXYETHANOL HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 VX6 2(C23 H28 N8 O S) FORMUL 4 MXE 3(C3 H8 O2) FORMUL 8 MES C6 H13 N O4 S FORMUL 9 HOH *125(H2 O) HELIX 1 AA1 GLU A 238 THR A 240 5 3 HELIX 2 AA2 GLY A 249 GLN A 252 5 4 HELIX 3 AA3 LYS A 263 SER A 265 5 3 HELIX 4 AA4 GLU A 279 LYS A 291 1 13 HELIX 5 AA5 LEU A 323 CYS A 330 1 8 HELIX 6 AA6 ASN A 336 LYS A 357 1 22 HELIX 7 AA7 ALA A 365 ARG A 367 5 3 HELIX 8 AA8 GLU A 373 HIS A 375 5 3 HELIX 9 AA9 PRO A 402 THR A 406 5 5 HELIX 10 AB1 ALA A 407 ASN A 414 1 8 HELIX 11 AB2 SER A 417 THR A 434 1 18 HELIX 12 AB3 ASP A 444 SER A 446 5 3 HELIX 13 AB4 GLN A 447 LYS A 454 1 8 HELIX 14 AB5 PRO A 465 TRP A 476 1 12 HELIX 15 AB6 ASN A 479 ARG A 483 5 5 HELIX 16 AB7 SER A 485 SER A 501 1 17 HELIX 17 AB8 GLU B 238 THR B 240 5 3 HELIX 18 AB9 GLY B 249 GLN B 252 5 4 HELIX 19 AC1 LYS B 263 SER B 265 5 3 HELIX 20 AC2 GLU B 279 ILE B 293 1 15 HELIX 21 AC3 LEU B 323 CYS B 330 1 8 HELIX 22 AC4 ASN B 336 LYS B 357 1 22 HELIX 23 AC5 ALA B 365 ARG B 367 5 3 HELIX 24 AC6 GLU B 373 HIS B 375 5 3 HELIX 25 AC7 PRO B 402 THR B 406 5 5 HELIX 26 AC8 ALA B 407 ASN B 414 1 8 HELIX 27 AC9 SER B 417 THR B 434 1 18 HELIX 28 AD1 GLN B 447 LYS B 454 1 8 HELIX 29 AD2 PRO B 465 TRP B 476 1 12 HELIX 30 AD3 ASN B 479 ARG B 483 5 5 HELIX 31 AD4 SER B 485 SER B 500 1 16 SHEET 1 AA1 5 ILE A 242 LYS A 247 0 SHEET 2 AA1 5 VAL A 256 TRP A 261 -1 O GLU A 258 N LYS A 245 SHEET 3 AA1 5 LEU A 266 LEU A 273 -1 O VAL A 268 N GLY A 259 SHEET 4 AA1 5 PHE A 311 GLU A 316 -1 O THR A 315 N ALA A 269 SHEET 5 AA1 5 LEU A 301 CYS A 305 -1 N LEU A 302 O ILE A 314 SHEET 1 AA2 3 GLY A 321 ASN A 322 0 SHEET 2 AA2 3 CYS A 369 VAL A 371 -1 O VAL A 371 N GLY A 321 SHEET 3 AA2 3 VAL A 377 VAL A 379 -1 O LYS A 378 N LEU A 370 SHEET 1 AA3 2 PHE A 359 ILE A 360 0 SHEET 2 AA3 2 SER A 385 ARG A 386 -1 O SER A 385 N ILE A 360 SHEET 1 AA4 2 TYR A 393 THR A 394 0 SHEET 2 AA4 2 LYS A 415 PHE A 416 -1 O PHE A 416 N TYR A 393 SHEET 1 AA5 5 ILE B 242 LYS B 247 0 SHEET 2 AA5 5 VAL B 256 TRP B 261 -1 O GLU B 258 N HIS B 246 SHEET 3 AA5 5 LEU B 266 LEU B 273 -1 O VAL B 270 N TYR B 257 SHEET 4 AA5 5 PHE B 311 GLU B 316 -1 O ILE B 313 N LYS B 271 SHEET 5 AA5 5 LEU B 301 CYS B 305 -1 N LEU B 302 O ILE B 314 SHEET 1 AA6 3 GLY B 321 ASN B 322 0 SHEET 2 AA6 3 CYS B 369 VAL B 371 -1 O VAL B 371 N GLY B 321 SHEET 3 AA6 3 VAL B 377 VAL B 379 -1 O LYS B 378 N LEU B 370 SHEET 1 AA7 2 PHE B 359 ILE B 360 0 SHEET 2 AA7 2 SER B 385 ARG B 386 -1 O SER B 385 N ILE B 360 SHEET 1 AA8 2 TYR B 393 THR B 394 0 SHEET 2 AA8 2 LYS B 415 PHE B 416 -1 O PHE B 416 N TYR B 393 CISPEP 1 PRO A 309 PRO A 310 0 3.69 CISPEP 2 PRO B 309 PRO B 310 0 0.29 SITE 1 AC1 16 LEU A 248 TYR A 253 VAL A 256 ALA A 269 SITE 2 AC1 16 LYS A 271 ILE A 313 THR A 315 GLU A 316 SITE 3 AC1 16 PHE A 317 MET A 318 THR A 319 TYR A 320 SITE 4 AC1 16 GLY A 321 LEU A 370 HOH A 751 HOH A 767 SITE 1 AC2 2 ASP A 363 GLY A 383 SITE 1 AC3 5 PHE A 401 PRO A 402 ILE A 403 LYS A 404 SITE 2 AC3 5 LEU A 445 SITE 1 AC4 10 LEU B 248 TYR B 253 VAL B 256 ALA B 269 SITE 2 AC4 10 THR B 315 GLU B 316 PHE B 317 MET B 318 SITE 3 AC4 10 THR B 319 GLY B 321 SITE 1 AC5 8 GLU A 282 ARG A 362 TYR A 393 HOH A 757 SITE 2 AC5 8 HOH A 771 VAL B 338 TYR B 342 ASN B 374 CRYST1 105.937 132.425 56.551 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009440 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007551 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017683 0.00000