HEADER PROTEIN TRANSPORT/TRANSCRIPTION/DNA 08-MAY-15 4ZPR TITLE CRYSTAL STRUCTURE OF THE HETERODIMERIC HIF-1A:ARNT COMPLEX WITH HRE TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL HYDROCARBON RECEPTOR NUCLEAR TRANSLOCATOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 82-464; COMPND 5 SYNONYM: ARNT PROTEIN, DIOXIN RECEPTOR, NUCLEAR TRANSLOCATOR, COMPND 6 HYPOXIA-INDUCIBLE FACTOR 1-BETA, HIF1-BETA; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HYPOXIA-INDUCIBLE FACTOR 1-ALPHA; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 13-357; COMPND 12 SYNONYM: HIF1-ALPHA, ARNT-INTERACTING PROTEIN, HYPOXIA INDUCIBLE COMPND 13 FACTOR 1, ALPHA SUBUNIT; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 3; COMPND 16 MOLECULE: DNA (5'- COMPND 17 D(*GP*GP*CP*TP*GP*CP*GP*TP*AP*CP*GP*TP*GP*CP*GP*GP*GP*TP*CP*GP*T)- COMPND 18 3'); COMPND 19 CHAIN: C; COMPND 20 ENGINEERED: YES; COMPND 21 OTHER_DETAILS: HRE DNA SENSE STRAND; COMPND 22 MOL_ID: 4; COMPND 23 MOLECULE: DNA (5'- COMPND 24 D(*CP*AP*CP*GP*AP*CP*CP*CP*GP*CP*AP*CP*GP*TP*AP*CP*GP*CP*AP*GP*C)- COMPND 25 3'); COMPND 26 CHAIN: D; COMPND 27 ENGINEERED: YES; COMPND 28 OTHER_DETAILS: HRE DNA ANTISENSE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ARNT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMKH; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 GENE: HIF1A; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PSJ2; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 22 ORGANISM_TAXID: 10090; SOURCE 23 MOL_ID: 4; SOURCE 24 SYNTHETIC: YES; SOURCE 25 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 26 ORGANISM_TAXID: 10090 KEYWDS ARNT, HIF-1A, HRE, BHLH-PAS, PROTEIN TRANSPORT-TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.WU,N.POTLURI,J.LU,Y.KIM,F.RASTINEJAD REVDAT 5 27-SEP-23 4ZPR 1 REMARK REVDAT 4 22-NOV-17 4ZPR 1 JRNL REMARK REVDAT 3 26-AUG-15 4ZPR 1 JRNL REVDAT 2 19-AUG-15 4ZPR 1 JRNL REVDAT 1 12-AUG-15 4ZPR 0 JRNL AUTH D.WU,N.POTLURI,J.LU,Y.KIM,F.RASTINEJAD JRNL TITL STRUCTURAL INTEGRATION IN HYPOXIA-INDUCIBLE FACTORS. JRNL REF NATURE V. 524 303 2015 JRNL REFN ESSN 1476-4687 JRNL PMID 26245371 JRNL DOI 10.1038/NATURE14883 REMARK 2 REMARK 2 RESOLUTION. 3.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 9578 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.272 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.341 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.040 REMARK 3 FREE R VALUE TEST SET COUNT : 962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8457 - 7.4310 0.95 1191 132 0.1846 0.2589 REMARK 3 2 7.4310 - 5.9132 1.00 1256 130 0.3131 0.4049 REMARK 3 3 5.9132 - 5.1702 1.00 1229 137 0.3366 0.4011 REMARK 3 4 5.1702 - 4.6994 1.00 1235 139 0.3314 0.4042 REMARK 3 5 4.6994 - 4.3637 1.00 1261 148 0.3364 0.4106 REMARK 3 6 4.3637 - 4.1071 1.00 1236 128 0.3605 0.4609 REMARK 3 7 4.1071 - 3.9019 1.00 1208 148 0.3872 0.4386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.840 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 43.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 204.7 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 194.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 5229 REMARK 3 ANGLE : 0.843 7222 REMARK 3 CHIRALITY : 0.033 812 REMARK 3 PLANARITY : 0.003 767 REMARK 3 DIHEDRAL : 21.056 2002 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZPR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-AUG-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9620 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.79000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ZP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES, PH 6.0, 100 MM CALCIUM REMARK 280 ACETATE, 15% PEG400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.82200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 182.73300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 60.91100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 ALA A 84 REMARK 465 ASP A 85 REMARK 465 LYS A 86 REMARK 465 CYS A 119 REMARK 465 SER A 120 REMARK 465 ARG A 143 REMARK 465 GLY A 144 REMARK 465 THR A 145 REMARK 465 GLY A 146 REMARK 465 ASN A 147 REMARK 465 THR A 148 REMARK 465 SER A 149 REMARK 465 THR A 150 REMARK 465 ASP A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 TYR A 154 REMARK 465 LYS A 155 REMARK 465 PRO A 156 REMARK 465 SER A 157 REMARK 465 PHE A 158 REMARK 465 LEU A 159 REMARK 465 CYS A 181 REMARK 465 GLU A 182 REMARK 465 THR A 183 REMARK 465 THR A 227 REMARK 465 SER A 228 REMARK 465 GLU A 229 REMARK 465 ASN A 230 REMARK 465 ALA A 231 REMARK 465 LEU A 232 REMARK 465 THR A 233 REMARK 465 GLY A 234 REMARK 465 ARG A 235 REMARK 465 VAL A 236 REMARK 465 LEU A 237 REMARK 465 ASP A 238 REMARK 465 LEU A 239 REMARK 465 LYS A 240 REMARK 465 THR A 241 REMARK 465 GLY A 242 REMARK 465 THR A 243 REMARK 465 VAL A 244 REMARK 465 LYS A 245 REMARK 465 LYS A 246 REMARK 465 GLU A 247 REMARK 465 GLY A 248 REMARK 465 GLN A 249 REMARK 465 GLN A 250 REMARK 465 SER A 251 REMARK 465 SER A 252 REMARK 465 MET A 253 REMARK 465 ARG A 254 REMARK 465 MET A 255 REMARK 465 CYS A 256 REMARK 465 MET A 257 REMARK 465 GLY A 258 REMARK 465 SER A 259 REMARK 465 GLY A 270 REMARK 465 THR A 271 REMARK 465 SER A 272 REMARK 465 SER A 273 REMARK 465 VAL A 274 REMARK 465 ASP A 275 REMARK 465 PRO A 276 REMARK 465 VAL A 277 REMARK 465 SER A 278 REMARK 465 MET A 279 REMARK 465 ASN A 280 REMARK 465 ARG A 281 REMARK 465 LEU A 282 REMARK 465 SER A 283 REMARK 465 PHE A 284 REMARK 465 LEU A 285 REMARK 465 ARG A 286 REMARK 465 ASN A 287 REMARK 465 ARG A 288 REMARK 465 CYS A 289 REMARK 465 ARG A 290 REMARK 465 ASN A 291 REMARK 465 GLY A 292 REMARK 465 LEU A 293 REMARK 465 GLY A 294 REMARK 465 SER A 295 REMARK 465 VAL A 296 REMARK 465 LYS A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 GLU A 300 REMARK 465 PRO A 301 REMARK 465 HIS A 302 REMARK 465 PHE A 303 REMARK 465 VAL A 304 REMARK 465 VAL A 305 REMARK 465 ILE A 312 REMARK 465 LYS A 313 REMARK 465 ALA A 314 REMARK 465 TRP A 315 REMARK 465 PRO A 316 REMARK 465 PRO A 317 REMARK 465 ALA A 318 REMARK 465 GLY A 319 REMARK 465 VAL A 320 REMARK 465 SER A 321 REMARK 465 LEU A 322 REMARK 465 PRO A 323 REMARK 465 ASP A 324 REMARK 465 ASP A 325 REMARK 465 ASP A 326 REMARK 465 PRO A 327 REMARK 465 GLU A 328 REMARK 465 ALA A 329 REMARK 465 GLY A 330 REMARK 465 GLN A 331 REMARK 465 GLY A 332 REMARK 465 SER A 333 REMARK 465 LYS A 334 REMARK 465 PHE A 335 REMARK 465 CYS A 336 REMARK 465 LEU A 337 REMARK 465 VAL A 345 REMARK 465 THR A 346 REMARK 465 SER A 347 REMARK 465 SER A 348 REMARK 465 PRO A 349 REMARK 465 ASN A 350 REMARK 465 CYS A 351 REMARK 465 THR A 352 REMARK 465 ASP A 353 REMARK 465 MET A 354 REMARK 465 SER A 355 REMARK 465 ASN A 356 REMARK 465 ILE A 357 REMARK 465 CYS A 358 REMARK 465 GLN A 359 REMARK 465 PRO A 360 REMARK 465 ARG A 428 REMARK 465 PHE A 429 REMARK 465 ARG A 430 REMARK 465 SER A 431 REMARK 465 LYS A 432 REMARK 465 THR A 433 REMARK 465 ARG A 434 REMARK 465 GLU A 435 REMARK 465 TRP A 436 REMARK 465 LEU A 437 REMARK 465 MET B 13 REMARK 465 SER B 14 REMARK 465 ASP B 74 REMARK 465 ALA B 75 REMARK 465 GLY B 76 REMARK 465 GLY B 77 REMARK 465 LEU B 78 REMARK 465 ASP B 79 REMARK 465 SER B 80 REMARK 465 GLU B 81 REMARK 465 ASP B 82 REMARK 465 GLU B 83 REMARK 465 MET B 84 REMARK 465 LYS B 85 REMARK 465 ALA B 86 REMARK 465 GLN B 87 REMARK 465 MET B 88 REMARK 465 HIS B 150 REMARK 465 ARG B 151 REMARK 465 ASN B 152 REMARK 465 GLY B 153 REMARK 465 PRO B 154 REMARK 465 VAL B 155 REMARK 465 ARG B 156 REMARK 465 LYS B 157 REMARK 465 GLY B 158 REMARK 465 LYS B 159 REMARK 465 GLU B 160 REMARK 465 LEU B 161 REMARK 465 ASN B 162 REMARK 465 SER B 177 REMARK 465 ARG B 178 REMARK 465 GLY B 179 REMARK 465 VAL B 200 REMARK 465 TYR B 201 REMARK 465 ASP B 202 REMARK 465 THR B 203 REMARK 465 ASN B 204 REMARK 465 SER B 205 REMARK 465 ASN B 206 REMARK 465 GLN B 207 REMARK 465 PRO B 208 REMARK 465 GLN B 209 REMARK 465 CYS B 210 REMARK 465 GLY B 211 REMARK 465 TYR B 212 REMARK 465 LYS B 213 REMARK 465 LYS B 214 REMARK 465 PRO B 215 REMARK 465 PRO B 216 REMARK 465 MET B 217 REMARK 465 THR B 218 REMARK 465 ILE B 235 REMARK 465 PRO B 236 REMARK 465 LEU B 237 REMARK 465 ASP B 238 REMARK 465 GLU B 257 REMARK 465 ARG B 258 REMARK 465 LEU B 350 REMARK 465 ILE B 351 REMARK 465 PHE B 352 REMARK 465 SER B 353 REMARK 465 LEU B 354 REMARK 465 GLN B 355 REMARK 465 GLN B 356 REMARK 465 THR B 357 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 109 OG SER A 113 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 125 N - CA - C ANGL. DEV. = 19.0 DEGREES REMARK 500 PRO A 388 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 TYR B 305 CB - CA - C ANGL. DEV. = -15.0 DEGREES REMARK 500 DC D 1 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 125 64.92 38.08 REMARK 500 SER A 192 3.14 -62.66 REMARK 500 ASN A 198 -133.58 56.51 REMARK 500 GLN A 199 65.23 29.18 REMARK 500 SER A 202 -67.93 -91.85 REMARK 500 TRP A 204 -113.20 -122.91 REMARK 500 PHE A 205 -122.45 54.62 REMARK 500 ASP A 211 43.86 -86.01 REMARK 500 GLN A 212 -17.45 -159.03 REMARK 500 ASP A 217 66.38 -100.73 REMARK 500 LEU A 225 49.04 -146.95 REMARK 500 HIS A 367 -169.43 -117.40 REMARK 500 THR A 374 -32.44 -156.18 REMARK 500 PRO A 388 -50.66 -28.23 REMARK 500 LYS A 419 107.07 -55.51 REMARK 500 LEU A 423 110.90 -165.57 REMARK 500 SER A 442 72.12 -106.11 REMARK 500 ASN A 448 108.46 -55.50 REMARK 500 PRO A 449 -35.02 -37.65 REMARK 500 GLU A 455 -17.28 -154.35 REMARK 500 SER B 51 -76.27 -65.12 REMARK 500 ASP B 108 97.18 -65.05 REMARK 500 MET B 109 89.54 -66.38 REMARK 500 MET B 120 -57.87 53.11 REMARK 500 LEU B 127 34.14 -145.86 REMARK 500 ASP B 140 -14.11 -148.05 REMARK 500 MET B 171 -168.38 -68.04 REMARK 500 LEU B 175 -31.27 -138.45 REMARK 500 MET B 182 -158.88 -136.28 REMARK 500 LYS B 185 -27.27 70.82 REMARK 500 PRO B 230 0.79 -57.27 REMARK 500 SER B 247 -168.58 -74.50 REMARK 500 MET B 250 67.06 65.70 REMARK 500 SER B 253 -32.98 -137.71 REMARK 500 MET B 263 -84.06 -111.65 REMARK 500 LEU B 270 -93.80 -85.73 REMARK 500 LEU B 271 -87.32 64.99 REMARK 500 LYS B 297 -141.96 -97.63 REMARK 500 GLN B 299 -168.93 -106.99 REMARK 500 THR B 302 -171.17 -66.94 REMARK 500 ASN B 326 106.69 -52.05 REMARK 500 LYS B 328 102.43 -56.09 REMARK 500 SER B 330 64.63 39.73 REMARK 500 PRO B 332 107.51 -50.08 REMARK 500 GLN B 347 62.21 64.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZP4 RELATED DB: PDB REMARK 900 RELATED ID: 4ZPH RELATED DB: PDB REMARK 900 RELATED ID: 4ZPK RELATED DB: PDB DBREF 4ZPR A 82 464 UNP P53762 ARNT_MOUSE 82 464 DBREF 4ZPR B 13 357 UNP Q61221 HIF1A_MOUSE 13 357 DBREF 4ZPR C 1 21 PDB 4ZPR 4ZPR 1 21 DBREF 4ZPR D 1 21 PDB 4ZPR 4ZPR 1 21 SEQADV 4ZPR MET A 81 UNP P53762 INITIATING METHIONINE SEQRES 1 A 384 MET SER SER ALA ASP LYS GLU ARG LEU ALA ARG GLU ASN SEQRES 2 A 384 HIS SER GLU ILE GLU ARG ARG ARG ARG ASN LYS MET THR SEQRES 3 A 384 ALA TYR ILE THR GLU LEU SER ASP MET VAL PRO THR CYS SEQRES 4 A 384 SER ALA LEU ALA ARG LYS PRO ASP LYS LEU THR ILE LEU SEQRES 5 A 384 ARG MET ALA VAL SER HIS MET LYS SER LEU ARG GLY THR SEQRES 6 A 384 GLY ASN THR SER THR ASP GLY SER TYR LYS PRO SER PHE SEQRES 7 A 384 LEU THR ASP GLN GLU LEU LYS HIS LEU ILE LEU GLU ALA SEQRES 8 A 384 ALA ASP GLY PHE LEU PHE ILE VAL SER CYS GLU THR GLY SEQRES 9 A 384 ARG VAL VAL TYR VAL SER ASP SER VAL THR PRO VAL LEU SEQRES 10 A 384 ASN GLN PRO GLN SER GLU TRP PHE GLY SER THR LEU TYR SEQRES 11 A 384 ASP GLN VAL HIS PRO ASP ASP VAL ASP LYS LEU ARG GLU SEQRES 12 A 384 GLN LEU SER THR SER GLU ASN ALA LEU THR GLY ARG VAL SEQRES 13 A 384 LEU ASP LEU LYS THR GLY THR VAL LYS LYS GLU GLY GLN SEQRES 14 A 384 GLN SER SER MET ARG MET CYS MET GLY SER ARG ARG SER SEQRES 15 A 384 PHE ILE CYS ARG MET ARG CYS GLY THR SER SER VAL ASP SEQRES 16 A 384 PRO VAL SER MET ASN ARG LEU SER PHE LEU ARG ASN ARG SEQRES 17 A 384 CYS ARG ASN GLY LEU GLY SER VAL LYS GLU GLY GLU PRO SEQRES 18 A 384 HIS PHE VAL VAL VAL HIS CYS THR GLY TYR ILE LYS ALA SEQRES 19 A 384 TRP PRO PRO ALA GLY VAL SER LEU PRO ASP ASP ASP PRO SEQRES 20 A 384 GLU ALA GLY GLN GLY SER LYS PHE CYS LEU VAL ALA ILE SEQRES 21 A 384 GLY ARG LEU GLN VAL THR SER SER PRO ASN CYS THR ASP SEQRES 22 A 384 MET SER ASN ILE CYS GLN PRO THR GLU PHE ILE SER ARG SEQRES 23 A 384 HIS ASN ILE GLU GLY ILE PHE THR PHE VAL ASP HIS ARG SEQRES 24 A 384 CYS VAL ALA THR VAL GLY TYR GLN PRO GLN GLU LEU LEU SEQRES 25 A 384 GLY LYS ASN ILE VAL GLU PHE CYS HIS PRO GLU ASP GLN SEQRES 26 A 384 GLN LEU LEU ARG ASP SER PHE GLN GLN VAL VAL LYS LEU SEQRES 27 A 384 LYS GLY GLN VAL LEU SER VAL MET PHE ARG PHE ARG SER SEQRES 28 A 384 LYS THR ARG GLU TRP LEU TRP MET ARG THR SER SER PHE SEQRES 29 A 384 THR PHE GLN ASN PRO TYR SER ASP GLU ILE GLU TYR ILE SEQRES 30 A 384 ILE CYS THR ASN THR ASN VAL SEQRES 1 B 345 MET SER SER GLU ARG ARG LYS GLU LYS SER ARG ASP ALA SEQRES 2 B 345 ALA ARG SER ARG ARG SER LYS GLU SER GLU VAL PHE TYR SEQRES 3 B 345 GLU LEU ALA HIS GLN LEU PRO LEU PRO HIS ASN VAL SER SEQRES 4 B 345 SER HIS LEU ASP LYS ALA SER VAL MET ARG LEU THR ILE SEQRES 5 B 345 SER TYR LEU ARG VAL ARG LYS LEU LEU ASP ALA GLY GLY SEQRES 6 B 345 LEU ASP SER GLU ASP GLU MET LYS ALA GLN MET ASP CYS SEQRES 7 B 345 PHE TYR LEU LYS ALA LEU ASP GLY PHE VAL MET VAL LEU SEQRES 8 B 345 THR ASP ASP GLY ASP MET VAL TYR ILE SER ASP ASN VAL SEQRES 9 B 345 ASN LYS TYR MET GLY LEU THR GLN PHE GLU LEU THR GLY SEQRES 10 B 345 HIS SER VAL PHE ASP PHE THR HIS PRO CYS ASP HIS GLU SEQRES 11 B 345 GLU MET ARG GLU MET LEU THR HIS ARG ASN GLY PRO VAL SEQRES 12 B 345 ARG LYS GLY LYS GLU LEU ASN THR GLN ARG SER PHE PHE SEQRES 13 B 345 LEU ARG MET LYS CYS THR LEU THR SER ARG GLY ARG THR SEQRES 14 B 345 MET ASN ILE LYS SER ALA THR TRP LYS VAL LEU HIS CYS SEQRES 15 B 345 THR GLY HIS ILE HIS VAL TYR ASP THR ASN SER ASN GLN SEQRES 16 B 345 PRO GLN CYS GLY TYR LYS LYS PRO PRO MET THR CYS LEU SEQRES 17 B 345 VAL LEU ILE CYS GLU PRO ILE PRO HIS PRO SER ASN ILE SEQRES 18 B 345 GLU ILE PRO LEU ASP SER LYS THR PHE LEU SER ARG HIS SEQRES 19 B 345 SER LEU ASP MET LYS PHE SER TYR CYS ASP GLU ARG ILE SEQRES 20 B 345 THR GLU LEU MET GLY TYR GLU PRO GLU GLU LEU LEU GLY SEQRES 21 B 345 ARG SER ILE TYR GLU TYR TYR HIS ALA LEU ASP SER ASP SEQRES 22 B 345 HIS LEU THR LYS THR HIS HIS ASP MET PHE THR LYS GLY SEQRES 23 B 345 GLN VAL THR THR GLY GLN TYR ARG MET LEU ALA LYS ARG SEQRES 24 B 345 GLY GLY TYR VAL TRP VAL GLU THR GLN ALA THR VAL ILE SEQRES 25 B 345 TYR ASN THR LYS ASN SER GLN PRO GLN CYS ILE VAL CYS SEQRES 26 B 345 VAL ASN TYR VAL VAL SER GLY ILE ILE GLN HIS ASP LEU SEQRES 27 B 345 ILE PHE SER LEU GLN GLN THR SEQRES 1 C 21 DG DG DC DT DG DC DG DT DA DC DG DT DG SEQRES 2 C 21 DC DG DG DG DT DC DG DT SEQRES 1 D 21 DC DA DC DG DA DC DC DC DG DC DA DC DG SEQRES 2 D 21 DT DA DC DG DC DA DG DC HELIX 1 AA1 GLU A 87 VAL A 116 1 30 HELIX 2 AA2 ASP A 127 LYS A 140 1 14 HELIX 3 AA3 ASP A 161 ASP A 173 1 13 HELIX 4 AA4 VAL A 193 ASN A 198 1 6 HELIX 5 AA5 THR A 208 VAL A 213 5 6 HELIX 6 AA6 VAL A 218 GLN A 224 1 7 HELIX 7 AA7 ARG A 379 VAL A 384 1 6 HELIX 8 AA8 GLN A 387 LEU A 391 5 5 HELIX 9 AA9 HIS A 401 GLU A 403 5 3 HELIX 10 AB1 ASP A 404 VAL A 416 1 13 HELIX 11 AB2 GLU B 16 GLN B 43 1 28 HELIX 12 AB3 ASP B 55 LEU B 73 1 19 HELIX 13 AB4 CYS B 90 LEU B 96 1 7 HELIX 14 AB5 ASP B 114 TYR B 119 5 6 HELIX 15 AB6 THR B 123 LEU B 127 5 5 HELIX 16 AB7 ASP B 140 MET B 147 1 8 HELIX 17 AB8 HIS B 229 ILE B 233 5 5 HELIX 18 AB9 HIS B 280 LYS B 297 1 18 HELIX 19 AC1 THR B 327 SER B 330 5 4 SHEET 1 AA1 5 VAL A 186 VAL A 189 0 SHEET 2 AA1 5 PHE A 175 VAL A 179 -1 N ILE A 178 O VAL A 187 SHEET 3 AA1 5 ALA A 339 ARG A 342 -1 O GLY A 341 N PHE A 175 SHEET 4 AA1 5 HIS A 307 GLY A 310 -1 N HIS A 307 O ARG A 342 SHEET 5 AA1 5 ARG A 261 ILE A 264 -1 N PHE A 263 O CYS A 308 SHEET 1 AA2 4 GLU A 362 PHE A 363 0 SHEET 2 AA2 4 ILE A 454 THR A 462 -1 O ASN A 461 N PHE A 363 SHEET 3 AA2 4 SER A 365 HIS A 367 -1 N SER A 365 O CYS A 459 SHEET 4 AA2 4 PHE A 373 VAL A 376 -1 O PHE A 375 N ARG A 366 SHEET 1 AA3 4 GLU A 362 PHE A 363 0 SHEET 2 AA3 4 ILE A 454 THR A 462 -1 O ASN A 461 N PHE A 363 SHEET 3 AA3 4 ARG A 440 GLN A 447 -1 N ARG A 440 O THR A 462 SHEET 4 AA3 4 SER A 424 MET A 426 -1 N VAL A 425 O THR A 441 SHEET 1 AA4 5 TYR B 111 ILE B 112 0 SHEET 2 AA4 5 PHE B 99 LEU B 103 -1 N VAL B 102 O TYR B 111 SHEET 3 AA4 5 LEU B 220 GLU B 225 -1 O CYS B 224 N PHE B 99 SHEET 4 AA4 5 LEU B 192 HIS B 197 -1 N HIS B 197 O VAL B 221 SHEET 5 AA4 5 ARG B 165 LEU B 169 -1 N LEU B 169 O LEU B 192 SHEET 1 AA5 2 LYS B 172 CYS B 173 0 SHEET 2 AA5 2 THR B 188 TRP B 189 -1 O THR B 188 N CYS B 173 SHEET 1 AA6 5 PHE B 252 TYR B 254 0 SHEET 2 AA6 5 PHE B 242 HIS B 246 -1 N ARG B 245 O SER B 253 SHEET 3 AA6 5 GLN B 331 VAL B 341 -1 O ASN B 339 N PHE B 242 SHEET 4 AA6 5 TYR B 314 ASN B 326 -1 N ILE B 324 O CYS B 334 SHEET 5 AA6 5 TYR B 305 LEU B 308 -1 N TYR B 305 O VAL B 317 CRYST1 66.735 66.735 243.644 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014985 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004104 0.00000