HEADER LIGASE 10-MAY-15 4ZQL TITLE CRYSTAL STRUCTURE OF TRIM24 WITH 3,4-DIMETHOXY-N-(6-(4- TITLE 2 METHOXYPHENOXY)-1,3-DIMETHYL-2-OXO-2,3-DIHYDRO-1H-BENZO[D]IMIDAZOL-5- TITLE 3 YL)BENZENESULFONAMIDE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION INTERMEDIARY FACTOR 1-ALPHA; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 791-972; COMPND 5 SYNONYM: TIF1-ALPHA,E3 UBIQUITIN-PROTEIN LIGASE TRIM24,RING FINGER COMPND 6 PROTEIN 82,TRIPARTITE MOTIF-CONTAINING PROTEIN 24; COMPND 7 EC: 6.3.2.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM24, RNF82, TIF1, TIF1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET15 KEYWDS TRANSCRIPTIONAL COACTIVATOR, HISTONE H3 MODIFICATIONS, E3 PROTEIN- KEYWDS 2 UBIQUITIN LIGASE ACTIVITY, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, SGC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR C.TALLANT,STRUCTURAL GENOMICS CONSORTIUM (SGC),P.G.K.CLARK, AUTHOR 2 L.C.C.VIEIRA,T.KROJER,G.NUNEZ-ALONSO,S.PICAUD,O.FEDOROV,D.J.DIXON, AUTHOR 3 F.VON DELFT,C.H.ARROWSMITH,A.M.EDWARDS,C.BOUNTRA,P.E.BRENNAN,S.KNAPP REVDAT 2 10-JAN-24 4ZQL 1 REMARK REVDAT 1 17-JUN-15 4ZQL 0 JRNL AUTH P.G.CLARK,L.C.VIEIRA,C.TALLANT,O.FEDOROV,D.C.SINGLETON, JRNL AUTH 2 C.M.ROGERS,O.P.MONTEIRO,J.M.BENNETT,R.BARONIO,S.MULLER, JRNL AUTH 3 D.L.DANIELS,J.MENDEZ,S.KNAPP,P.E.BRENNAN,D.J.DIXON JRNL TITL CRYSTAL STRUCTURE OF TRIM24 WITH JRNL TITL 2 3,4-DIMETHOXY-N-(6-(4-METHOXYPHENOXY)-1,3-DIMETHYL-2-OXO-2, JRNL TITL 3 3-DIHYDRO-1H-BENZO[D]IMIDAZOL-5-YL)BENZENESULFONAMIDE JRNL TITL 4 INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 35229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1856 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2356 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 208 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.60000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.39000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.115 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3002 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2789 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4061 ; 1.658 ; 2.009 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6482 ; 0.860 ; 3.003 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 5.637 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;37.275 ;25.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 527 ;13.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.855 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3291 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 639 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1408 ; 3.259 ; 4.012 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1407 ; 3.252 ; 4.010 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1753 ; 4.128 ; 7.443 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1754 ; 4.131 ; 7.444 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1594 ; 6.175 ; 5.271 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1595 ; 6.173 ; 5.274 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2309 ; 8.181 ; 9.287 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3520 ; 9.678 ;25.179 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3442 ; 9.575 ;24.792 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 825 B 1006 REMARK 3 ORIGIN FOR THE GROUP (A): 21.2620 2.3300 15.1480 REMARK 3 T TENSOR REMARK 3 T11: 0.0538 T22: 0.0080 REMARK 3 T33: 0.0180 T12: 0.0023 REMARK 3 T13: -0.0257 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.9424 L22: 1.4842 REMARK 3 L33: 1.9242 L12: 0.0655 REMARK 3 L13: 0.1906 L23: -0.3912 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.0817 S13: 0.0516 REMARK 3 S21: -0.1599 S22: -0.0124 S23: 0.0491 REMARK 3 S31: 0.0474 S32: -0.0438 S33: -0.0118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 825 B 1006 REMARK 3 ORIGIN FOR THE GROUP (A): -4.0230 2.9330 46.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.0170 T22: 0.0078 REMARK 3 T33: 0.0349 T12: -0.0037 REMARK 3 T13: -0.0227 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.2488 L22: 0.9402 REMARK 3 L33: 1.1008 L12: 0.4628 REMARK 3 L13: 0.3957 L23: 0.2905 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0763 S13: -0.0177 REMARK 3 S21: 0.0305 S22: 0.0270 S23: -0.0271 REMARK 3 S31: -0.0139 S32: 0.0039 S33: -0.0400 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZQL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 27.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : 0.02700 REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.54700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3O33 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 2M AMMONIUM REMARK 280 SULFATE, 2%(V/V) PEG 400, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.70700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.33050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.70700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.33050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 823 REMARK 465 PRO A 885 REMARK 465 SER A 886 REMARK 465 HIS A 887 REMARK 465 ASN A 888 REMARK 465 SER A 889 REMARK 465 GLU A 890 REMARK 465 HIS B 823 REMARK 465 PRO B 885 REMARK 465 SER B 886 REMARK 465 HIS B 887 REMARK 465 ASN B 888 REMARK 465 SER B 889 REMARK 465 GLU B 890 REMARK 465 LYS B 891 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 992 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1223 O HOH A 1281 1.32 REMARK 500 O HOH A 1271 O HOH A 1282 2.09 REMARK 500 O THR A 894 O HOH A 1201 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1201 O HOH A 1227 4555 1.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 956 61.29 -111.05 REMARK 500 ASP A 983 -1.21 74.83 REMARK 500 ASP B 934 -0.32 74.24 REMARK 500 TYR B 956 64.03 -106.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 829 SG REMARK 620 2 CYS A 832 SG 110.6 REMARK 620 3 HIS A 849 ND1 102.5 97.2 REMARK 620 4 CYS A 852 SG 111.1 117.2 116.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 841 SG REMARK 620 2 CYS A 844 SG 107.2 REMARK 620 3 CYS A 867 SG 108.6 113.9 REMARK 620 4 CYS A 870 SG 112.3 102.4 112.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 829 SG REMARK 620 2 CYS B 832 SG 110.1 REMARK 620 3 HIS B 849 ND1 103.6 99.3 REMARK 620 4 CYS B 852 SG 111.3 116.9 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 841 SG REMARK 620 2 CYS B 844 SG 111.6 REMARK 620 3 CYS B 867 SG 108.6 111.2 REMARK 620 4 CYS B 870 SG 111.7 102.7 110.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4QH B 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE B 1105 DBREF 4ZQL A 825 1006 UNP O15164 TIF1A_HUMAN 791 972 DBREF 4ZQL B 825 1006 UNP O15164 TIF1A_HUMAN 791 972 SEQADV 4ZQL HIS A 823 UNP O15164 EXPRESSION TAG SEQADV 4ZQL MET A 824 UNP O15164 EXPRESSION TAG SEQADV 4ZQL HIS B 823 UNP O15164 EXPRESSION TAG SEQADV 4ZQL MET B 824 UNP O15164 EXPRESSION TAG SEQRES 1 A 184 HIS MET ASN GLU ASP TRP CYS ALA VAL CYS GLN ASN GLY SEQRES 2 A 184 GLY GLU LEU LEU CYS CYS GLU LYS CYS PRO LYS VAL PHE SEQRES 3 A 184 HIS LEU SER CYS HIS VAL PRO THR LEU THR ASN PHE PRO SEQRES 4 A 184 SER GLY GLU TRP ILE CYS THR PHE CYS ARG ASP LEU SER SEQRES 5 A 184 LYS PRO GLU VAL GLU TYR ASP CYS ASP ALA PRO SER HIS SEQRES 6 A 184 ASN SER GLU LYS LYS LYS THR GLU GLY LEU VAL LYS LEU SEQRES 7 A 184 THR PRO ILE ASP LYS ARG LYS CYS GLU ARG LEU LEU LEU SEQRES 8 A 184 PHE LEU TYR CYS HIS GLU MET SER LEU ALA PHE GLN ASP SEQRES 9 A 184 PRO VAL PRO LEU THR VAL PRO ASP TYR TYR LYS ILE ILE SEQRES 10 A 184 LYS ASN PRO MET ASP LEU SER THR ILE LYS LYS ARG LEU SEQRES 11 A 184 GLN GLU ASP TYR SER MET TYR SER LYS PRO GLU ASP PHE SEQRES 12 A 184 VAL ALA ASP PHE ARG LEU ILE PHE GLN ASN CYS ALA GLU SEQRES 13 A 184 PHE ASN GLU PRO ASP SER GLU VAL ALA ASN ALA GLY ILE SEQRES 14 A 184 LYS LEU GLU ASN TYR PHE GLU GLU LEU LEU LYS ASN LEU SEQRES 15 A 184 TYR PRO SEQRES 1 B 184 HIS MET ASN GLU ASP TRP CYS ALA VAL CYS GLN ASN GLY SEQRES 2 B 184 GLY GLU LEU LEU CYS CYS GLU LYS CYS PRO LYS VAL PHE SEQRES 3 B 184 HIS LEU SER CYS HIS VAL PRO THR LEU THR ASN PHE PRO SEQRES 4 B 184 SER GLY GLU TRP ILE CYS THR PHE CYS ARG ASP LEU SER SEQRES 5 B 184 LYS PRO GLU VAL GLU TYR ASP CYS ASP ALA PRO SER HIS SEQRES 6 B 184 ASN SER GLU LYS LYS LYS THR GLU GLY LEU VAL LYS LEU SEQRES 7 B 184 THR PRO ILE ASP LYS ARG LYS CYS GLU ARG LEU LEU LEU SEQRES 8 B 184 PHE LEU TYR CYS HIS GLU MET SER LEU ALA PHE GLN ASP SEQRES 9 B 184 PRO VAL PRO LEU THR VAL PRO ASP TYR TYR LYS ILE ILE SEQRES 10 B 184 LYS ASN PRO MET ASP LEU SER THR ILE LYS LYS ARG LEU SEQRES 11 B 184 GLN GLU ASP TYR SER MET TYR SER LYS PRO GLU ASP PHE SEQRES 12 B 184 VAL ALA ASP PHE ARG LEU ILE PHE GLN ASN CYS ALA GLU SEQRES 13 B 184 PHE ASN GLU PRO ASP SER GLU VAL ALA ASN ALA GLY ILE SEQRES 14 B 184 LYS LEU GLU ASN TYR PHE GLU GLU LEU LEU LYS ASN LEU SEQRES 15 B 184 TYR PRO HET ZN A1101 1 HET ZN A1102 1 HET SO4 A1103 5 HET DMS A1104 4 HET ZN B1101 1 HET ZN B1102 1 HET 4QH B1103 35 HET SO4 B1104 5 HET 1PE B1105 16 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM DMS DIMETHYL SULFOXIDE HETNAM 4QH 3,4-DIMETHOXY-N-[6-(4-METHOXYPHENOXY)-1,3-DIMETHYL-2- HETNAM 2 4QH OXO-2,3-DIHYDRO-1H-BENZIMIDAZOL-5- HETNAM 3 4QH YL]BENZENESULFONAMIDE HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 ZN 4(ZN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 DMS C2 H6 O S FORMUL 9 4QH C24 H25 N3 O7 S FORMUL 11 1PE C10 H22 O6 FORMUL 12 HOH *208(H2 O) HELIX 1 AA1 TYR A 880 ALA A 884 5 5 HELIX 2 AA2 THR A 901 HIS A 918 1 18 HELIX 3 AA3 GLU A 919 GLN A 925 5 7 HELIX 4 AA4 ASP A 934 ILE A 939 1 6 HELIX 5 AA5 ASP A 944 GLU A 954 1 11 HELIX 6 AA6 LYS A 961 ASN A 980 1 20 HELIX 7 AA7 SER A 984 TYR A 1005 1 22 HELIX 8 AA8 TYR B 880 ALA B 884 5 5 HELIX 9 AA9 THR B 901 HIS B 918 1 18 HELIX 10 AB1 SER B 921 ASP B 926 1 6 HELIX 11 AB2 ASP B 934 ILE B 939 1 6 HELIX 12 AB3 ASP B 944 GLU B 954 1 11 HELIX 13 AB4 LYS B 961 ASN B 980 1 20 HELIX 14 AB5 SER B 984 TYR B 1005 1 22 SHEET 1 AA1 2 LEU A 839 CYS A 840 0 SHEET 2 AA1 2 VAL A 847 PHE A 848 -1 O PHE A 848 N LEU A 839 SHEET 1 AA2 2 LEU B 839 CYS B 840 0 SHEET 2 AA2 2 VAL B 847 PHE B 848 -1 O PHE B 848 N LEU B 839 LINK SG CYS A 829 ZN ZN A1101 1555 1555 2.31 LINK SG CYS A 832 ZN ZN A1101 1555 1555 2.32 LINK SG CYS A 841 ZN ZN A1102 1555 1555 2.20 LINK SG CYS A 844 ZN ZN A1102 1555 1555 2.35 LINK ND1 HIS A 849 ZN ZN A1101 1555 1555 2.14 LINK SG CYS A 852 ZN ZN A1101 1555 1555 2.31 LINK SG CYS A 867 ZN ZN A1102 1555 1555 2.35 LINK SG CYS A 870 ZN ZN A1102 1555 1555 2.35 LINK SG CYS B 829 ZN ZN B1101 1555 1555 2.33 LINK SG CYS B 832 ZN ZN B1101 1555 1555 2.35 LINK SG CYS B 841 ZN ZN B1102 1555 1555 2.30 LINK SG CYS B 844 ZN ZN B1102 1555 1555 2.34 LINK ND1 HIS B 849 ZN ZN B1101 1555 1555 2.15 LINK SG CYS B 852 ZN ZN B1101 1555 1555 2.27 LINK SG CYS B 867 ZN ZN B1102 1555 1555 2.35 LINK SG CYS B 870 ZN ZN B1102 1555 1555 2.34 CISPEP 1 VAL A 854 PRO A 855 0 -1.01 CISPEP 2 VAL B 854 PRO B 855 0 3.20 SITE 1 AC1 4 CYS A 829 CYS A 832 HIS A 849 CYS A 852 SITE 1 AC2 4 CYS A 841 CYS A 844 CYS A 867 CYS A 870 SITE 1 AC3 3 PRO A 902 ARG A 906 HOH A1242 SITE 1 AC4 3 ALA A 923 ASN A 980 HOH A1217 SITE 1 AC5 4 CYS B 829 CYS B 832 HIS B 849 CYS B 852 SITE 1 AC6 4 CYS B 841 CYS B 844 CYS B 867 CYS B 870 SITE 1 AC7 11 LEU A 930 TYR A 936 LEU B 922 ALA B 923 SITE 2 AC7 11 PHE B 924 VAL B 928 VAL B 932 PHE B 979 SITE 3 AC7 11 ASN B 980 HOH B1212 HOH B1268 SITE 1 AC8 2 PRO B 902 ARG B 906 SITE 1 AC9 6 LYS B 846 GLU B 895 GLY B 896 PHE B 914 SITE 2 AC9 6 TYR B 956 HOH B1238 CRYST1 89.414 36.661 128.989 90.00 109.87 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011184 0.000000 0.004043 0.00000 SCALE2 0.000000 0.027277 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008244 0.00000