HEADER TOXIN 11-MAY-15 4ZQU TITLE CDIA-CT/CDII TOXIN AND IMMUNITY COMPLEX FROM YERSINIA TITLE 2 PSEUDOTUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDIA-CT TOXIN, CONSERVED DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CDII TOXIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS SEROTYPE O:3 SOURCE 3 (STRAIN YPIII); SOURCE 4 ORGANISM_TAXID: 502800; SOURCE 5 STRAIN: YPIII; SOURCE 6 GENE: YPK_0575; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 12 RUBISLAW STR. ATCC 10717; SOURCE 13 ORGANISM_TAXID: 938143; SOURCE 14 GENE: SEERU717_10215; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TOXIN, IMMUNITY, COMPLEX, ENDONUCLEASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.MORSE,P.M.JOHNSON,A.CREDALI,C.W.GOULDING REVDAT 5 27-SEP-23 4ZQU 1 REMARK REVDAT 4 25-DEC-19 4ZQU 1 REMARK REVDAT 3 13-SEP-17 4ZQU 1 JRNL REMARK REVDAT 2 02-DEC-15 4ZQU 1 JRNL REVDAT 1 28-OCT-15 4ZQU 0 JRNL AUTH R.P.MORSE,J.L.WILLETT,P.M.JOHNSON,J.ZHENG,A.CREDALI, JRNL AUTH 2 A.INIGUEZ,J.S.NOWICK,C.S.HAYES,C.W.GOULDING JRNL TITL DIVERSIFICATION OF BETA-AUGMENTATION INTERACTIONS BETWEEN JRNL TITL 2 CDI TOXIN/IMMUNITY PROTEINS. JRNL REF J.MOL.BIOL. V. 427 3766 2015 JRNL REFN ESSN 1089-8638 JRNL PMID 26449640 JRNL DOI 10.1016/J.JMB.2015.09.020 REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : TWIN_LSQ_F REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 18149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1851 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 4.9015 - 3.8929 0.89 1254 137 0.1445 0.1861 REMARK 3 2 3.8929 - 3.4016 0.90 1269 138 0.1779 0.2424 REMARK 3 3 3.4016 - 3.0909 0.90 1258 135 0.2146 0.2641 REMARK 3 4 3.0909 - 2.8695 0.89 1250 144 0.2311 0.2584 REMARK 3 5 2.8695 - 2.7004 0.89 1258 148 0.2454 0.3068 REMARK 3 6 2.7004 - 2.5653 0.90 1252 137 0.2589 0.3062 REMARK 3 7 2.5653 - 2.4536 0.90 1256 134 0.2591 0.3392 REMARK 3 8 2.4536 - 2.3592 0.89 1239 148 0.2637 0.3397 REMARK 3 9 2.3592 - 2.2778 0.89 1254 147 0.2675 0.2712 REMARK 3 10 2.2778 - 2.2066 0.90 1246 126 0.2659 0.3240 REMARK 3 11 2.2066 - 2.1436 0.90 1253 136 0.2834 0.3065 REMARK 3 12 2.1436 - 2.0872 0.88 1257 143 0.2975 0.3587 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2356 REMARK 3 ANGLE : 0.694 3207 REMARK 3 CHIRALITY : 0.028 372 REMARK 3 PLANARITY : 0.003 408 REMARK 3 DIHEDRAL : 13.290 852 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 17 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6801 13.5193 11.3905 REMARK 3 T TENSOR REMARK 3 T11: 0.3767 T22: 0.2143 REMARK 3 T33: 0.3802 T12: 0.0591 REMARK 3 T13: -0.0510 T23: -0.0875 REMARK 3 L TENSOR REMARK 3 L11: 7.2267 L22: 5.9866 REMARK 3 L33: 3.9950 L12: 1.7048 REMARK 3 L13: 0.9887 L23: -2.1211 REMARK 3 S TENSOR REMARK 3 S11: 0.1872 S12: -0.3723 S13: -0.2038 REMARK 3 S21: -0.0254 S22: -0.5343 S23: -0.4152 REMARK 3 S31: -0.1897 S32: 0.1580 S33: 0.2467 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 184 THROUGH 193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.2609 22.3697 15.7953 REMARK 3 T TENSOR REMARK 3 T11: 0.4397 T22: 0.2752 REMARK 3 T33: 0.3138 T12: 0.0219 REMARK 3 T13: -0.1174 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.5508 L22: 2.6302 REMARK 3 L33: 3.5997 L12: -0.8874 REMARK 3 L13: 0.8154 L23: -0.3480 REMARK 3 S TENSOR REMARK 3 S11: 0.1237 S12: -0.2067 S13: -0.1230 REMARK 3 S21: -0.2788 S22: 0.4263 S23: 0.2791 REMARK 3 S31: 0.7554 S32: 0.0692 S33: -0.3407 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 194 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3811 20.6426 13.5749 REMARK 3 T TENSOR REMARK 3 T11: 0.3093 T22: 0.2709 REMARK 3 T33: 0.2753 T12: 0.0033 REMARK 3 T13: -0.0152 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 1.3840 L22: 3.7603 REMARK 3 L33: 1.6511 L12: -1.3581 REMARK 3 L13: 0.4035 L23: 1.0050 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.0737 S13: -0.2705 REMARK 3 S21: 0.2435 S22: 0.0146 S23: 0.6469 REMARK 3 S31: 0.0622 S32: -0.3024 S33: 0.0844 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1702 -3.3543 16.6267 REMARK 3 T TENSOR REMARK 3 T11: 0.6069 T22: 0.3718 REMARK 3 T33: 0.3412 T12: -0.0180 REMARK 3 T13: 0.0500 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 4.3130 L22: 1.5923 REMARK 3 L33: 1.7451 L12: 0.1558 REMARK 3 L13: 0.9607 L23: 0.3996 REMARK 3 S TENSOR REMARK 3 S11: 0.2773 S12: -0.7180 S13: 0.0133 REMARK 3 S21: 0.3846 S22: -0.1749 S23: -0.3438 REMARK 3 S31: 0.5465 S32: -0.0196 S33: -0.1223 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7071 7.9477 15.2610 REMARK 3 T TENSOR REMARK 3 T11: 0.3783 T22: 0.2488 REMARK 3 T33: 0.4214 T12: -0.0684 REMARK 3 T13: 0.0973 T23: -0.0677 REMARK 3 L TENSOR REMARK 3 L11: 1.3090 L22: 4.3522 REMARK 3 L33: 0.9930 L12: -0.8166 REMARK 3 L13: 0.2884 L23: -0.0587 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: -0.4789 S13: 0.4453 REMARK 3 S21: 0.5697 S22: -0.1487 S23: 0.8898 REMARK 3 S31: -0.0809 S32: 0.3139 S33: 0.1037 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6105 26.9603 18.2947 REMARK 3 T TENSOR REMARK 3 T11: 0.2885 T22: 0.3066 REMARK 3 T33: 0.4187 T12: 0.0457 REMARK 3 T13: -0.0063 T23: 0.0535 REMARK 3 L TENSOR REMARK 3 L11: 1.1968 L22: 1.4203 REMARK 3 L33: 2.0747 L12: 0.0428 REMARK 3 L13: -0.2179 L23: 0.4497 REMARK 3 S TENSOR REMARK 3 S11: -0.0237 S12: -0.0287 S13: -0.3497 REMARK 3 S21: 0.1502 S22: -0.1164 S23: 0.5821 REMARK 3 S31: -0.2099 S32: -0.0427 S33: 0.1102 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 270 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2423 6.4221 8.8114 REMARK 3 T TENSOR REMARK 3 T11: 0.3471 T22: 0.2519 REMARK 3 T33: 0.3056 T12: 0.0077 REMARK 3 T13: -0.0200 T23: -0.0318 REMARK 3 L TENSOR REMARK 3 L11: 1.8656 L22: 3.8994 REMARK 3 L33: 1.3275 L12: 0.6471 REMARK 3 L13: 0.1023 L23: -0.4737 REMARK 3 S TENSOR REMARK 3 S11: -0.1172 S12: 0.1015 S13: -0.3694 REMARK 3 S21: -0.4001 S22: 0.1857 S23: 0.3522 REMARK 3 S31: 0.1933 S32: 0.2010 S33: -0.0936 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 271 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.3402 2.8422 6.1871 REMARK 3 T TENSOR REMARK 3 T11: 0.3851 T22: 0.2752 REMARK 3 T33: 0.4223 T12: -0.0882 REMARK 3 T13: -0.0208 T23: -0.0733 REMARK 3 L TENSOR REMARK 3 L11: 3.1604 L22: 6.0533 REMARK 3 L33: 2.6052 L12: -1.4017 REMARK 3 L13: -0.0021 L23: -0.1067 REMARK 3 S TENSOR REMARK 3 S11: -0.1543 S12: -0.1668 S13: 0.2757 REMARK 3 S21: -0.3828 S22: -0.0291 S23: 0.9857 REMARK 3 S31: 0.3398 S32: -0.3503 S33: 0.1164 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1997 9.1039 6.1259 REMARK 3 T TENSOR REMARK 3 T11: 0.3526 T22: 0.2837 REMARK 3 T33: 0.3225 T12: -0.0231 REMARK 3 T13: -0.0044 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 6.6097 L22: 2.7095 REMARK 3 L33: 5.3731 L12: 1.9402 REMARK 3 L13: 1.5757 L23: -0.6037 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: 0.9286 S13: -0.1598 REMARK 3 S21: -0.5178 S22: -0.1037 S23: 0.4107 REMARK 3 S31: -0.1695 S32: 0.5376 S33: 0.2216 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3380 37.3677 24.3456 REMARK 3 T TENSOR REMARK 3 T11: 0.2447 T22: 0.2772 REMARK 3 T33: 0.2753 T12: 0.0619 REMARK 3 T13: -0.0153 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 2.4788 L22: 2.2936 REMARK 3 L33: 1.0255 L12: 0.5530 REMARK 3 L13: -0.6416 L23: 0.1985 REMARK 3 S TENSOR REMARK 3 S11: 0.1302 S12: -0.3070 S13: 0.2094 REMARK 3 S21: 0.0559 S22: -0.0593 S23: 0.1285 REMARK 3 S31: -0.1843 S32: 0.0756 S33: -0.1287 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 38 THROUGH 59 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8816 46.6038 32.6705 REMARK 3 T TENSOR REMARK 3 T11: 0.3622 T22: 0.6824 REMARK 3 T33: 0.4189 T12: 0.1392 REMARK 3 T13: -0.0468 T23: -0.2646 REMARK 3 L TENSOR REMARK 3 L11: 0.7168 L22: 0.7588 REMARK 3 L33: 2.8409 L12: -0.7245 REMARK 3 L13: -1.4166 L23: 1.4657 REMARK 3 S TENSOR REMARK 3 S11: -0.2730 S12: -1.1479 S13: 0.6782 REMARK 3 S21: 0.3047 S22: 0.0984 S23: -0.3177 REMARK 3 S31: -0.5252 S32: 0.0351 S33: -0.6365 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 60 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4321 36.3351 10.2490 REMARK 3 T TENSOR REMARK 3 T11: 0.3265 T22: 0.2424 REMARK 3 T33: 0.2867 T12: 0.0266 REMARK 3 T13: 0.0096 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 2.3451 L22: 1.8682 REMARK 3 L33: 2.8927 L12: -0.0456 REMARK 3 L13: -0.3324 L23: 0.1016 REMARK 3 S TENSOR REMARK 3 S11: 0.1536 S12: 0.0651 S13: 0.4817 REMARK 3 S21: -0.1527 S22: -0.1268 S23: -0.1012 REMARK 3 S31: -0.1021 S32: 0.0387 S33: -0.0477 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4662 30.2862 32.8130 REMARK 3 T TENSOR REMARK 3 T11: 0.3394 T22: 0.5435 REMARK 3 T33: 0.2267 T12: 0.0379 REMARK 3 T13: -0.0286 T23: 0.0352 REMARK 3 L TENSOR REMARK 3 L11: 0.9721 L22: 2.2632 REMARK 3 L33: 4.3294 L12: 0.6529 REMARK 3 L13: 0.4226 L23: -0.0633 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: -0.7274 S13: -0.1937 REMARK 3 S21: 0.5299 S22: -0.1769 S23: -0.0969 REMARK 3 S31: 0.5355 S32: 0.5495 S33: 0.0734 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 106 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2573 30.1520 35.3685 REMARK 3 T TENSOR REMARK 3 T11: 0.3901 T22: 0.5265 REMARK 3 T33: 0.3842 T12: -0.0188 REMARK 3 T13: 0.0667 T23: 0.0985 REMARK 3 L TENSOR REMARK 3 L11: 2.0068 L22: 2.9016 REMARK 3 L33: 2.9960 L12: -2.0442 REMARK 3 L13: 0.5472 L23: 0.0796 REMARK 3 S TENSOR REMARK 3 S11: -0.0857 S12: -0.8129 S13: -0.3412 REMARK 3 S21: 0.6733 S22: 0.3992 S23: 0.6223 REMARK 3 S31: 0.0548 S32: -0.4031 S33: -0.2284 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 125 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.7246 31.8664 24.8144 REMARK 3 T TENSOR REMARK 3 T11: 0.2972 T22: 0.3758 REMARK 3 T33: 0.4601 T12: -0.0572 REMARK 3 T13: 0.0027 T23: 0.0569 REMARK 3 L TENSOR REMARK 3 L11: 2.1652 L22: 5.0861 REMARK 3 L33: 1.8372 L12: -2.0457 REMARK 3 L13: 0.8398 L23: -0.2886 REMARK 3 S TENSOR REMARK 3 S11: 0.2053 S12: -0.3817 S13: -0.5570 REMARK 3 S21: 0.0014 S22: -0.1396 S23: 0.7630 REMARK 3 S31: 0.3375 S32: -0.1829 S33: -0.0674 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 144 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.6171 30.6212 21.8601 REMARK 3 T TENSOR REMARK 3 T11: 0.5016 T22: 0.6835 REMARK 3 T33: 0.9564 T12: -0.1390 REMARK 3 T13: -0.0470 T23: -0.1111 REMARK 3 L TENSOR REMARK 3 L11: 0.9025 L22: 0.8636 REMARK 3 L33: 1.7275 L12: -0.5734 REMARK 3 L13: -0.3941 L23: 1.1314 REMARK 3 S TENSOR REMARK 3 S11: 0.3207 S12: 0.8976 S13: -0.8580 REMARK 3 S21: -0.1952 S22: -0.6138 S23: 0.7370 REMARK 3 S31: 1.0182 S32: -1.4252 S33: 0.2301 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 153 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9000 43.7904 26.9907 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: 0.4728 REMARK 3 T33: 0.4849 T12: 0.0575 REMARK 3 T13: -0.0233 T23: -0.1187 REMARK 3 L TENSOR REMARK 3 L11: 2.5487 L22: 3.9404 REMARK 3 L33: 1.8673 L12: -0.4927 REMARK 3 L13: 0.0435 L23: 1.3314 REMARK 3 S TENSOR REMARK 3 S11: -0.2834 S12: -0.3857 S13: -0.0407 REMARK 3 S21: 0.0276 S22: 0.1040 S23: 0.5416 REMARK 3 S31: -0.1399 S32: -0.5216 S33: 0.2394 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZQU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000201356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18152 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 46.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4G6U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES, PH 7, 20% PEG 3350, 1% REMARK 280 TRYPTONE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.75500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.75500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLY B 177 REMARK 465 LEU B 178 REMARK 465 GLU B 179 REMARK 465 HIS B 180 REMARK 465 HIS B 181 REMARK 465 HIS B 182 REMARK 465 HIS B 183 REMARK 465 HIS B 184 REMARK 465 HIS B 185 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 220 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 LYS A 297 CG CD CE NZ REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 LYS B 108 CG CD CE NZ REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 LYS B 176 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 195 -118.73 53.72 REMARK 500 ASN A 225 -4.00 69.65 REMARK 500 ASN B 15 -159.91 -114.25 REMARK 500 TYR B 27 -70.18 -147.68 REMARK 500 ARG B 28 -67.42 -99.45 REMARK 500 PRO B 43 2.16 -56.33 REMARK 500 HIS B 136 85.31 -66.11 REMARK 500 LEU B 147 -168.59 -107.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 DBREF 4ZQU A 174 297 UNP A7FE33 A7FE33_YERP3 97 220 DBREF 4ZQU B 1 185 PDB 4ZQU 4ZQU 1 185 SEQRES 1 A 124 MET PRO TRP GLU ASP TYR VAL GLY LYS THR LEU PRO VAL SEQRES 2 A 124 GLY SER ARG LEU PRO PRO ASN PHE LYS THR TYR ASP TYR SEQRES 3 A 124 PHE ASP ARG ALA THR GLY ALA VAL VAL SER ALA LYS SER SEQRES 4 A 124 LEU ASP THR GLN THR MET ALA LYS LEU SER ASN PRO ASN SEQRES 5 A 124 GLN VAL TYR SER SER ILE LYS LYS ASN ILE ASP VAL THR SEQRES 6 A 124 ALA LYS PHE GLU LYS ALA SER LEU SER GLY VAL THR VAL SEQRES 7 A 124 ASN SER SER MET ILE THR SER LYS GLU VAL ARG LEU ALA SEQRES 8 A 124 VAL PRO VAL ASN THR THR LYS ALA GLN TRP THR GLU ILE SEQRES 9 A 124 ASN ARG ALA ILE GLU TYR GLY LYS ASN GLN GLY VAL LYS SEQRES 10 A 124 VAL THR VAL THR GLN VAL LYS SEQRES 1 B 185 MET ASN ASP ILE VAL LYS SER ALA TRP ALA SER VAL LYS SEQRES 2 B 185 MET ASN THR ASP PHE ILE CYS VAL ASP THR TYR SER GLY SEQRES 3 B 185 TYR ARG SER ASN GLN LEU ASP PRO LEU GLY VAL GLN HIS SEQRES 4 B 185 LEU SER SER PRO ASP VAL SER ASP LEU ASP LEU GLY GLU SEQRES 5 B 185 MET VAL LYS ASP ALA LEU SER HIS SER ARG PHE VAL LEU SEQRES 6 B 185 PRO ALA PRO ARG THR ASP ILE TRP ILE HIS PRO GLU VAL SEQRES 7 B 185 THR PHE ASP LEU ASP LEU TYR ASP SER ARG ARG THR VAL SEQRES 8 B 185 GLU ARG TYR ASP GLU TRP VAL LYS LYS LEU MET VAL HIS SEQRES 9 B 185 TYR GLY TYR LYS THR LYS ARG ALA LEU PHE LYS ASP MET SEQRES 10 B 185 LYS SER CYS ASP ILE CYS CYS ASN HIS ASP ALA ILE THR SEQRES 11 B 185 ILE SER PRO THR ARG HIS GLU LYS LEU GLU VAL TRP GLY SEQRES 12 B 185 GLY THR GLY LEU LYS GLY SER ASP ASN VAL ILE LEU SER SEQRES 13 B 185 VAL ASP SER SER PRO THR GLU ILE GLY ALA GLY LEU ARG SEQRES 14 B 185 LEU ALA LEU SER ARG CYS LYS GLY LEU GLU HIS HIS HIS SEQRES 15 B 185 HIS HIS HIS HET CL A 301 1 HET CL A 302 1 HETNAM CL CHLORIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 5 HOH *148(H2 O) HELIX 1 AA1 PRO A 175 THR A 183 1 9 HELIX 2 AA2 ASP A 214 LEU A 221 1 8 HELIX 3 AA3 ASN A 225 LYS A 240 1 16 HELIX 4 AA4 THR A 270 GLN A 287 1 18 HELIX 5 AA5 SER B 46 HIS B 60 1 15 HELIX 6 AA6 ASP B 81 ASP B 86 1 6 HELIX 7 AA7 ASP B 86 GLY B 106 1 21 HELIX 8 AA8 THR B 109 ASP B 116 1 8 HELIX 9 AA9 SER B 160 SER B 173 1 14 SHEET 1 AA1 4 TYR A 199 PHE A 200 0 SHEET 2 AA1 4 ALA A 206 SER A 212 -1 O VAL A 208 N TYR A 199 SHEET 3 AA1 4 SER A 258 VAL A 265 1 O GLU A 260 N SER A 209 SHEET 4 AA1 4 LYS A 290 GLN A 295 1 O THR A 294 N LEU A 263 SHEET 1 AA2 7 GLN B 38 SER B 41 0 SHEET 2 AA2 7 ILE B 19 GLY B 26 -1 N VAL B 21 O HIS B 39 SHEET 3 AA2 7 ASN B 30 LEU B 32 -1 O GLN B 31 N SER B 25 SHEET 4 AA2 7 VAL A 249 ASN A 252 -1 N THR A 250 O ASN B 30 SHEET 5 AA2 7 LYS A 243 LEU A 246 -1 N ALA A 244 O VAL A 251 SHEET 6 AA2 7 VAL B 141 GLY B 143 -1 O TRP B 142 N SER A 245 SHEET 7 AA2 7 ARG B 135 LYS B 138 -1 N ARG B 135 O GLY B 143 SHEET 1 AA3 6 GLN B 38 SER B 41 0 SHEET 2 AA3 6 ILE B 19 GLY B 26 -1 N VAL B 21 O HIS B 39 SHEET 3 AA3 6 ALA B 8 MET B 14 -1 N LYS B 13 O CYS B 20 SHEET 4 AA3 6 LYS B 118 CYS B 124 -1 O LYS B 118 N MET B 14 SHEET 5 AA3 6 ILE B 129 PRO B 133 -1 O SER B 132 N ASP B 121 SHEET 6 AA3 6 VAL B 153 LEU B 155 -1 O VAL B 153 N ILE B 131 SHEET 1 AA4 2 VAL B 64 LEU B 65 0 SHEET 2 AA4 2 THR B 79 PHE B 80 1 O THR B 79 N LEU B 65 CISPEP 1 THR B 145 GLY B 146 0 -2.99 CISPEP 2 LYS B 148 GLY B 149 0 -12.91 SITE 1 AC1 1 MET A 255 SITE 1 AC2 1 ARG A 279 CRYST1 63.510 68.310 71.419 90.00 92.18 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015746 0.000000 0.000599 0.00000 SCALE2 0.000000 0.014639 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014012 0.00000