HEADER LIPID BINDING PROTEIN 12-MAY-15 4ZRA TITLE CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS LPRG BINDING TO TITLE 2 TRIACYLGLYCERIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN LPRG; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: 27 KDA LIPOPROTEIN,ANTIGEN P27; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS (STRAIN ATCC 25618 / SOURCE 3 H37RV); SOURCE 4 ORGANISM_TAXID: 83332; SOURCE 5 STRAIN: ATCC 25618 / H37RV; SOURCE 6 GENE: LPRG, LPP-27, RV1411C, MTCY21B4.28C; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LPRG, LIPOPROTEIN, STRUCTURAL GENOMICS, TB STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, TBSGC, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.J.MARTINOT,M.FARROW,L.BAI,E.LAYRE,T.Y.CHENG,J.H.C.TSAI,J.IQBAL, AUTHOR 2 J.ANNAND,Z.SULLIVAN,M.HUSSAIN,J.SACCHETTINI,D.B.MOODY,J.SEELIGER, AUTHOR 3 E.J.RUBIN,TB STRUCTURAL GENOMICS CONSORTIUM (TBSGC) REVDAT 3 06-MAR-24 4ZRA 1 REMARK REVDAT 2 17-FEB-16 4ZRA 1 REMARK REVDAT 1 10-FEB-16 4ZRA 0 JRNL AUTH A.J.MARTINOT,M.FARROW,L.BAI,E.LAYRE,T.Y.CHENG,J.H.TSAI, JRNL AUTH 2 J.IQBAL,J.W.ANNAND,Z.A.SULLIVAN,M.M.HUSSAIN,J.SACCHETTINI, JRNL AUTH 3 D.B.MOODY,J.C.SEELIGER,E.J.RUBIN JRNL TITL MYCOBACTERIAL METABOLIC SYNDROME: LPRG AND RV1410 REGULATE JRNL TITL 2 TRIACYLGLYCERIDE LEVELS, GROWTH RATE AND VIRULENCE IN JRNL TITL 3 MYCOBACTERIUM TUBERCULOSIS. JRNL REF PLOS PATHOG. V. 12 05351 2016 JRNL REFN ESSN 1553-7374 JRNL PMID 26751071 JRNL DOI 10.1371/JOURNAL.PPAT.1005351 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 33474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1764 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2122 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 259 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.71000 REMARK 3 B22 (A**2) : 1.16000 REMARK 3 B33 (A**2) : -0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.199 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2988 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2894 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4071 ; 1.914 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6687 ; 1.275 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 388 ; 8.320 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;38.649 ;26.807 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 451 ;16.815 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ; 9.252 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 475 ; 0.113 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3416 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 610 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 36 226 C 36 226 9939 0.160 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4ZRA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209721. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 193 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35238 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.11800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 8.60 REMARK 200 R MERGE FOR SHELL (I) : 0.78500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE BUFFER, PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.83850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.79650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.83850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.79650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 545 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 HIS A 34 REMARK 465 HIS A 35 REMARK 465 MET C 29 REMARK 465 HIS C 30 REMARK 465 HIS C 31 REMARK 465 HIS C 32 REMARK 465 HIS C 33 REMARK 465 VAL C 228 REMARK 465 GLN C 229 REMARK 465 VAL C 230 REMARK 465 THR C 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 72 O23 4RF A 301 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 560 O HOH A 560 2555 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 73 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 129 -70.27 -106.92 REMARK 500 SER A 213 -132.60 63.83 REMARK 500 VAL A 230 -141.28 -71.43 REMARK 500 HIS C 35 -142.31 -97.06 REMARK 500 VAL C 64 -84.25 -49.01 REMARK 500 LEU C 71 64.59 25.44 REMARK 500 ILE C 129 -74.04 -110.27 REMARK 500 PRO C 183 -9.84 -56.01 REMARK 500 ALA C 186 -109.79 48.39 REMARK 500 THR C 187 -34.45 60.65 REMARK 500 SER C 213 -135.19 64.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 228 GLN A 229 -101.14 REMARK 500 THR C 63 VAL C 64 -145.79 REMARK 500 ASN C 185 ALA C 186 142.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4RF A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3MH8 RELATED DB: PDB REMARK 900 RELATED ID: 3MHA RELATED DB: PDB DBREF 4ZRA A 36 231 UNP P9WK45 LPRG_MYCTU 36 231 DBREF 4ZRA C 36 231 UNP P9WK45 LPRG_MYCTU 36 231 SEQADV 4ZRA MET A 29 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS A 30 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS A 31 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS A 32 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS A 33 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS A 34 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS A 35 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA MET C 29 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS C 30 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS C 31 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS C 32 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS C 33 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS C 34 UNP P9WK45 EXPRESSION TAG SEQADV 4ZRA HIS C 35 UNP P9WK45 EXPRESSION TAG SEQRES 1 A 203 MET HIS HIS HIS HIS HIS HIS GLY PRO LEU PRO ASP ALA SEQRES 2 A 203 LYS PRO LEU VAL GLU GLU ALA THR ALA GLN THR LYS ALA SEQRES 3 A 203 LEU LYS SER ALA HIS MET VAL LEU THR VAL ASN GLY LYS SEQRES 4 A 203 ILE PRO GLY LEU SER LEU LYS THR LEU SER GLY ASP LEU SEQRES 5 A 203 THR THR ASN PRO THR ALA ALA THR GLY ASN VAL LYS LEU SEQRES 6 A 203 THR LEU GLY GLY SER ASP ILE ASP ALA ASP PHE VAL VAL SEQRES 7 A 203 PHE ASP GLY ILE LEU TYR ALA THR LEU THR PRO ASN GLN SEQRES 8 A 203 TRP SER ASP PHE GLY PRO ALA ALA ASP ILE TYR ASP PRO SEQRES 9 A 203 ALA GLN VAL LEU ASN PRO ASP THR GLY LEU ALA ASN VAL SEQRES 10 A 203 LEU ALA ASN PHE ALA ASP ALA LYS ALA GLU GLY ARG ASP SEQRES 11 A 203 THR ILE ASN GLY GLN ASN THR ILE ARG ILE SER GLY LYS SEQRES 12 A 203 VAL SER ALA GLN ALA VAL ASN GLN ILE ALA PRO PRO PHE SEQRES 13 A 203 ASN ALA THR GLN PRO VAL PRO ALA THR VAL TRP ILE GLN SEQRES 14 A 203 GLU THR GLY ASP HIS GLN LEU ALA GLN ALA GLN LEU ASP SEQRES 15 A 203 ARG GLY SER GLY ASN SER VAL GLN MET THR LEU SER LYS SEQRES 16 A 203 TRP GLY GLU LYS VAL GLN VAL THR SEQRES 1 C 203 MET HIS HIS HIS HIS HIS HIS GLY PRO LEU PRO ASP ALA SEQRES 2 C 203 LYS PRO LEU VAL GLU GLU ALA THR ALA GLN THR LYS ALA SEQRES 3 C 203 LEU LYS SER ALA HIS MET VAL LEU THR VAL ASN GLY LYS SEQRES 4 C 203 ILE PRO GLY LEU SER LEU LYS THR LEU SER GLY ASP LEU SEQRES 5 C 203 THR THR ASN PRO THR ALA ALA THR GLY ASN VAL LYS LEU SEQRES 6 C 203 THR LEU GLY GLY SER ASP ILE ASP ALA ASP PHE VAL VAL SEQRES 7 C 203 PHE ASP GLY ILE LEU TYR ALA THR LEU THR PRO ASN GLN SEQRES 8 C 203 TRP SER ASP PHE GLY PRO ALA ALA ASP ILE TYR ASP PRO SEQRES 9 C 203 ALA GLN VAL LEU ASN PRO ASP THR GLY LEU ALA ASN VAL SEQRES 10 C 203 LEU ALA ASN PHE ALA ASP ALA LYS ALA GLU GLY ARG ASP SEQRES 11 C 203 THR ILE ASN GLY GLN ASN THR ILE ARG ILE SER GLY LYS SEQRES 12 C 203 VAL SER ALA GLN ALA VAL ASN GLN ILE ALA PRO PRO PHE SEQRES 13 C 203 ASN ALA THR GLN PRO VAL PRO ALA THR VAL TRP ILE GLN SEQRES 14 C 203 GLU THR GLY ASP HIS GLN LEU ALA GLN ALA GLN LEU ASP SEQRES 15 C 203 ARG GLY SER GLY ASN SER VAL GLN MET THR LEU SER LYS SEQRES 16 C 203 TRP GLY GLU LYS VAL GLN VAL THR HET 4RF A 301 57 HETNAM 4RF TRIPALMITOYLGLYCEROL HETSYN 4RF PROPANE-1,2,3-TRIYL TRIHEXADECANOATE FORMUL 3 4RF C51 H98 O6 FORMUL 4 HOH *259(H2 O) HELIX 1 AA1 ASP A 40 ALA A 54 1 15 HELIX 2 AA2 ALA A 127 ILE A 129 5 3 HELIX 3 AA3 ASP A 131 ASN A 137 5 7 HELIX 4 AA4 GLY A 141 ASN A 148 1 8 HELIX 5 AA5 SER A 173 ALA A 181 1 9 HELIX 6 AA6 PRO A 182 ASN A 185 5 4 HELIX 7 AA7 ASP C 40 ALA C 54 1 15 HELIX 8 AA8 ALA C 127 ILE C 129 5 3 HELIX 9 AA9 ASP C 131 ASN C 137 5 7 HELIX 10 AB1 GLY C 141 ASN C 148 1 8 HELIX 11 AB2 SER C 173 ALA C 181 1 9 HELIX 12 AB3 PRO C 182 ASN C 185 5 4 SHEET 1 AA111 GLN A 119 PRO A 125 0 SHEET 2 AA111 ILE A 110 THR A 116 -1 N LEU A 111 O PHE A 123 SHEET 3 AA111 SER A 98 PHE A 107 -1 N VAL A 105 O TYR A 112 SHEET 4 AA111 ALA A 86 LEU A 95 -1 N LEU A 93 O ILE A 100 SHEET 5 AA111 LEU A 73 THR A 81 -1 N ASP A 79 O THR A 88 SHEET 6 AA111 SER A 57 ASN A 65 -1 N VAL A 64 O LYS A 74 SHEET 7 AA111 ASN A 215 SER A 222 -1 O SER A 222 N HIS A 59 SHEET 8 AA111 LEU A 204 GLY A 212 -1 N ALA A 207 O MET A 219 SHEET 9 AA111 VAL A 190 GLN A 197 -1 N TRP A 195 O GLN A 206 SHEET 10 AA111 GLN A 163 VAL A 172 -1 N VAL A 172 O VAL A 190 SHEET 11 AA111 PHE A 149 ILE A 160 -1 N GLU A 155 O ARG A 167 SHEET 1 AA211 GLN C 119 PRO C 125 0 SHEET 2 AA211 ILE C 110 THR C 116 -1 N LEU C 111 O PHE C 123 SHEET 3 AA211 SER C 98 PHE C 107 -1 N VAL C 105 O TYR C 112 SHEET 4 AA211 ALA C 86 LEU C 95 -1 N LEU C 95 O SER C 98 SHEET 5 AA211 LEU C 73 THR C 81 -1 N LYS C 74 O LYS C 92 SHEET 6 AA211 SER C 57 THR C 63 -1 N MET C 60 O GLY C 78 SHEET 7 AA211 ASN C 215 SER C 222 -1 O SER C 222 N HIS C 59 SHEET 8 AA211 LEU C 204 GLY C 212 -1 N ALA C 207 O MET C 219 SHEET 9 AA211 VAL C 190 GLN C 197 -1 N TRP C 195 O GLN C 206 SHEET 10 AA211 GLN C 163 VAL C 172 -1 N VAL C 172 O VAL C 190 SHEET 11 AA211 PHE C 149 ILE C 160 -1 N GLU C 155 O ARG C 167 CISPEP 1 ASN A 83 PRO A 84 0 0.82 CISPEP 2 GLN A 229 VAL A 230 0 -11.82 CISPEP 3 VAL C 64 ASN C 65 0 -13.62 CISPEP 4 ASN C 83 PRO C 84 0 4.94 SITE 1 AC1 10 MET A 60 LEU A 62 GLY A 70 SER A 72 SITE 2 AC1 10 PHE A 123 ILE A 129 TYR A 130 VAL A 135 SITE 3 AC1 10 LEU C 115 SER C 121 CRYST1 95.677 71.593 61.894 90.00 106.55 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010452 0.000000 0.003106 0.00000 SCALE2 0.000000 0.013968 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016855 0.00000