HEADER TRANSFERASE 12-MAY-15 4ZRL TITLE STRUCTURE OF THE NON CANONICAL POLY(A) POLYMERASE COMPLEX GLD-2 - GLD- TITLE 2 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(A) RNA POLYMERASE GLD-2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 527-923; COMPND 5 SYNONYM: DEFECTIVE IN GERM LINE DEVELOPMENT PROTEIN 2; COMPND 6 EC: 2.7.7.19; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DEFECTIVE IN GERM LINE DEVELOPMENT PROTEIN 3; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 13-88; COMPND 12 SYNONYM: GERMLINE DEVELOPMENT DEFECTIVE 3; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: GLD-2, ZC308.1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETM30; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 11 ORGANISM_TAXID: 6239; SOURCE 12 GENE: GLD-3, T07F8.3; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 15 EXPRESSION_SYSTEM_VARIANT: PLYS; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS CYTOPLASMIC POLY(A)POLYMERASE, POST-TRANSCRIPTIONAL REGULATION, KEYWDS 2 POLYADENYLATION, NON CANONICAL POLY(A) POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.NAKEL,F.BONNEAU,C.R.ECKMANN,E.CONTI REVDAT 5 06-SEP-17 4ZRL 1 REMARK ATOM REVDAT 4 13-JUL-16 4ZRL 1 REMARK REVDAT 3 22-JUL-15 4ZRL 1 JRNL REVDAT 2 15-JUL-15 4ZRL 1 JRNL REVDAT 1 08-JUL-15 4ZRL 0 JRNL AUTH K.NAKEL,F.BONNEAU,C.R.ECKMANN,E.CONTI JRNL TITL STRUCTURAL BASIS FOR THE ACTIVATION OF THE C. ELEGANS JRNL TITL 2 NONCANONICAL CYTOPLASMIC POLY(A)-POLYMERASE GLD-2 BY GLD-3. JRNL REF PROC.NATL.ACAD.SCI.USA V. 112 8614 2015 JRNL REFN ESSN 1091-6490 JRNL PMID 26124149 JRNL DOI 10.1073/PNAS.1504648112 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1615 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 37101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1848 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.3432 - 5.3660 1.00 2753 140 0.1850 0.2148 REMARK 3 2 5.3660 - 4.2600 1.00 2742 152 0.1541 0.1742 REMARK 3 3 4.2600 - 3.7218 1.00 2773 147 0.1588 0.1873 REMARK 3 4 3.7218 - 3.3816 1.00 2745 140 0.1785 0.2629 REMARK 3 5 3.3816 - 3.1393 1.00 2774 145 0.1853 0.2418 REMARK 3 6 3.1393 - 2.9542 1.00 2736 145 0.2040 0.2248 REMARK 3 7 2.9542 - 2.8063 1.00 2765 145 0.2047 0.2426 REMARK 3 8 2.8063 - 2.6841 1.00 2749 140 0.2025 0.3442 REMARK 3 9 2.6841 - 2.5808 1.00 2768 148 0.2123 0.2512 REMARK 3 10 2.5808 - 2.4918 1.00 2750 141 0.2183 0.2390 REMARK 3 11 2.4918 - 2.4138 1.00 2736 145 0.2198 0.2854 REMARK 3 12 2.4138 - 2.3448 1.00 2782 147 0.2378 0.3018 REMARK 3 13 2.3448 - 2.2831 0.80 2180 113 0.2586 0.2896 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3079 REMARK 3 ANGLE : 0.753 4173 REMARK 3 CHIRALITY : 0.027 470 REMARK 3 PLANARITY : 0.004 538 REMARK 3 DIHEDRAL : 14.378 1119 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZRL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209761. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97975 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37155 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 47.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.73100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 550, POTASSIUM NITRATE, REMARK 280 MAGNESIUM NITRATE, HEPES, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.32750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.33300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.68350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.33300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.32750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.68350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 525 REMARK 465 ALA A 526 REMARK 465 MSE A 527 REMARK 465 GLY A 528 REMARK 465 PHE A 529 REMARK 465 ALA A 530 REMARK 465 SER A 531 REMARK 465 PRO A 532 REMARK 465 SER A 533 REMARK 465 PRO A 534 REMARK 465 PRO A 535 REMARK 465 THR A 536 REMARK 465 SER A 537 REMARK 465 LEU A 538 REMARK 465 LEU A 539 REMARK 465 SER A 540 REMARK 465 GLU A 541 REMARK 465 PRO A 542 REMARK 465 LEU A 543 REMARK 465 SER A 544 REMARK 465 ARG A 545 REMARK 465 GLU A 766 REMARK 465 VAL A 767 REMARK 465 ALA A 768 REMARK 465 ASP A 769 REMARK 465 ASP A 770 REMARK 465 ILE A 771 REMARK 465 ASP A 772 REMARK 465 GLN A 773 REMARK 465 SER A 839 REMARK 465 ILE A 840 REMARK 465 ARG A 841 REMARK 465 GLN A 842 REMARK 465 GLY A 843 REMARK 465 ARG A 844 REMARK 465 ARG A 845 REMARK 465 VAL A 846 REMARK 465 GLU A 847 REMARK 465 GLY A 848 REMARK 465 THR A 849 REMARK 465 PRO A 850 REMARK 465 GLY A 851 REMARK 465 ILE A 852 REMARK 465 PRO A 853 REMARK 465 MSE A 854 REMARK 465 PRO A 876 REMARK 465 PHE A 877 REMARK 465 THR A 878 REMARK 465 ASN A 879 REMARK 465 SER A 880 REMARK 465 ASN A 881 REMARK 465 MSE B 12 REMARK 465 ALA B 13 REMARK 465 HIS B 14 REMARK 465 SER B 15 REMARK 465 TYR B 16 REMARK 465 ASN B 17 REMARK 465 PRO B 18 REMARK 465 PHE B 19 REMARK 465 VAL B 20 REMARK 465 ARG B 21 REMARK 465 SER B 22 REMARK 465 ALA B 23 REMARK 465 VAL B 24 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 551 CG CD OE1 OE2 REMARK 470 LYS A 552 CB CG CD CE NZ REMARK 470 LYS A 559 CG CD CE NZ REMARK 470 LYS A 621 CG CD CE NZ REMARK 470 LYS A 639 CB CG CD CE NZ REMARK 470 LYS A 650 CG CD CE NZ REMARK 470 ASN A 713 CG OD1 ND2 REMARK 470 LYS A 714 CB CG CD CE NZ REMARK 470 ARG A 748 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 751 CG OD1 ND2 REMARK 470 LYS A 752 CG CD CE NZ REMARK 470 GLU A 765 CB CG CD OE1 OE2 REMARK 470 LYS A 778 CB CG CD CE NZ REMARK 470 HIS A 855 CB CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 865 CG CD NE CZ NH1 NH2 REMARK 470 THR A 882 CB OG1 CG2 REMARK 470 LYS A 914 CG CD CE NZ REMARK 470 LYS B 85 CB CG CD CE NZ REMARK 470 GLU B 87 CB CG CD OE1 OE2 REMARK 470 ALA B 88 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 899 O HOH A 1101 2.09 REMARK 500 O HOH A 1178 O HOH A 1181 2.09 REMARK 500 O LEU A 696 O HOH A 1102 2.10 REMARK 500 N VAL A 700 O HOH A 1102 2.15 REMARK 500 O HOH A 1128 O HOH A 1181 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 661 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 597 14.40 -144.78 REMARK 500 ALA A 659 -158.70 -97.62 REMARK 500 ALA A 660 -157.98 62.45 REMARK 500 PRO A 661 34.05 -84.47 REMARK 500 LYS A 778 41.93 -147.36 REMARK 500 HIS A 856 83.00 -66.90 REMARK 500 ILE A 858 89.60 -68.58 REMARK 500 GLU A 917 42.45 -93.16 REMARK 500 GLN B 65 39.63 -142.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1001 DBREF 4ZRL A 527 923 UNP O17087 GLD2_CAEEL 527 923 DBREF 4ZRL B 13 88 UNP Q95ZK7 GLD3_CAEEL 13 88 SEQADV 4ZRL GLY A 525 UNP O17087 EXPRESSION TAG SEQADV 4ZRL ALA A 526 UNP O17087 EXPRESSION TAG SEQADV 4ZRL MSE A 527 UNP O17087 ARG 527 CONFLICT SEQADV 4ZRL A UNP O17087 ARG 813 DELETION SEQADV 4ZRL A UNP O17087 ALA 814 DELETION SEQADV 4ZRL A UNP O17087 ALA 815 DELETION SEQADV 4ZRL A UNP O17087 LEU 816 DELETION SEQADV 4ZRL A UNP O17087 ALA 817 DELETION SEQADV 4ZRL A UNP O17087 VAL 818 DELETION SEQADV 4ZRL A UNP O17087 ARG 819 DELETION SEQADV 4ZRL A UNP O17087 PRO 820 DELETION SEQADV 4ZRL A UNP O17087 LYS 821 DELETION SEQADV 4ZRL A UNP O17087 ILE 822 DELETION SEQADV 4ZRL A UNP O17087 HIS 823 DELETION SEQADV 4ZRL A UNP O17087 SER 824 DELETION SEQADV 4ZRL A UNP O17087 ASN 825 DELETION SEQADV 4ZRL A UNP O17087 SER 826 DELETION SEQADV 4ZRL A UNP O17087 GLU 827 DELETION SEQADV 4ZRL A UNP O17087 GLY 828 DELETION SEQADV 4ZRL A UNP O17087 ASP 829 DELETION SEQADV 4ZRL A UNP O17087 LYS 830 DELETION SEQADV 4ZRL A UNP O17087 GLU 831 DELETION SEQADV 4ZRL A UNP O17087 THR 832 DELETION SEQADV 4ZRL A UNP O17087 PRO 833 DELETION SEQADV 4ZRL A UNP O17087 PRO 834 DELETION SEQADV 4ZRL A UNP O17087 PRO 835 DELETION SEQADV 4ZRL A UNP O17087 SER 836 DELETION SEQADV 4ZRL A UNP O17087 SER 837 DELETION SEQADV 4ZRL A UNP O17087 SER 838 DELETION SEQADV 4ZRL A UNP O17087 ALA 839 DELETION SEQADV 4ZRL A UNP O17087 SER 840 DELETION SEQADV 4ZRL A UNP O17087 THR 841 DELETION SEQADV 4ZRL A UNP O17087 SER 842 DELETION SEQADV 4ZRL A UNP O17087 SER 843 DELETION SEQADV 4ZRL A UNP O17087 ILE 844 DELETION SEQADV 4ZRL A UNP O17087 HIS 845 DELETION SEQADV 4ZRL A UNP O17087 ASN 846 DELETION SEQADV 4ZRL A UNP O17087 GLY 847 DELETION SEQADV 4ZRL MSE B 12 UNP Q95ZK7 INITIATING METHIONINE SEQRES 1 A 364 GLY ALA MSE GLY PHE ALA SER PRO SER PRO PRO THR SER SEQRES 2 A 364 LEU LEU SER GLU PRO LEU SER ARG MSE ASP VAL LEU SER SEQRES 3 A 364 GLU LYS ILE TRP ASP TYR HIS ASN LYS VAL SER GLN THR SEQRES 4 A 364 ASP GLU MSE LEU GLN ARG LYS LEU HIS LEU ARG ASP MSE SEQRES 5 A 364 LEU TYR THR ALA ILE SER PRO VAL PHE PRO LEU SER GLY SEQRES 6 A 364 LEU TYR VAL VAL GLY SER SER LEU ASN GLY PHE GLY ASN SEQRES 7 A 364 ASN SER SER ASP MSE ASP LEU CYS LEU MSE ILE THR ASN SEQRES 8 A 364 LYS ASP LEU ASP GLN LYS ASN ASP ALA VAL VAL VAL LEU SEQRES 9 A 364 ASN LEU ILE LEU SER THR LEU GLN TYR GLU LYS PHE VAL SEQRES 10 A 364 GLU SER GLN LYS LEU ILE LEU ALA LYS VAL PRO ILE LEU SEQRES 11 A 364 ARG ILE ASN PHE ALA ALA PRO PHE ASP ASP ILE THR VAL SEQRES 12 A 364 ASP LEU ASN ALA ASN ASN SER VAL ALA ILE ARG ASN THR SEQRES 13 A 364 HIS LEU LEU CYS TYR TYR SER SER TYR ASP TRP ARG VAL SEQRES 14 A 364 ARG PRO LEU VAL SER VAL VAL LYS GLU TRP ALA LYS ARG SEQRES 15 A 364 LYS GLY ILE ASN ASP ALA ASN LYS SER SER PHE THR SER SEQRES 16 A 364 TYR SER LEU VAL LEU MSE VAL ILE HIS PHE LEU GLN CYS SEQRES 17 A 364 GLY PRO THR LYS VAL LEU PRO ASN LEU GLN GLN SER TYR SEQRES 18 A 364 PRO ASN ARG PHE SER ASN LYS VAL ASP VAL ARG THR LEU SEQRES 19 A 364 ASN VAL THR MSE ALA LEU GLU GLU VAL ALA ASP ASP ILE SEQRES 20 A 364 ASP GLN SER LEU SER GLU LYS THR THR LEU GLY GLU LEU SEQRES 21 A 364 LEU ILE GLY PHE LEU ASP TYR TYR ALA ASN GLU PHE ASN SEQRES 22 A 364 TYR ASP ARG ASP ALA ILE SER ILE ARG GLN GLY ARG ARG SEQRES 23 A 364 VAL GLU GLY THR PRO GLY ILE PRO MSE HIS HIS SER ILE SEQRES 24 A 364 SER ASN PRO HIS PHE TRP ARG SER GLN TRP ARG CYS VAL SEQRES 25 A 364 CYS ILE GLU GLU PRO PHE THR ASN SER ASN THR ALA HIS SEQRES 26 A 364 SER ILE TYR ASP GLU MSE VAL PHE GLU ALA ILE LYS LYS SEQRES 27 A 364 ALA PHE ARG GLU ALA HIS GLY GLU LEU GLN HIS ASN HIS SEQRES 28 A 364 ASP LEU ASP LYS LEU MSE GLU CYS GLU PRO ILE LYS ALA SEQRES 1 B 77 MSE ALA HIS SER TYR ASN PRO PHE VAL ARG SER ALA VAL SEQRES 2 B 77 GLU TYR ASP ALA ASP THR ARG LEU GLN MSE ALA GLU ASN SEQRES 3 B 77 ALA ALA SER ALA ARG LYS LEU PHE VAL SER SER ALA LEU SEQRES 4 B 77 LYS ASP ILE ILE VAL ASN PRO GLU ASN PHE TYR HIS ASP SEQRES 5 B 77 PHE GLN GLN SER ALA GLN MSE ALA GLU ASP ALA ASN GLN SEQRES 6 B 77 ARG ARG GLN VAL SER TYR ASN THR LYS ARG GLU ALA MODRES 4ZRL MSE A 546 MET MODIFIED RESIDUE MODRES 4ZRL MSE A 566 MET MODIFIED RESIDUE MODRES 4ZRL MSE A 576 MET MODIFIED RESIDUE MODRES 4ZRL MSE A 607 MET MODIFIED RESIDUE MODRES 4ZRL MSE A 612 MET MODIFIED RESIDUE MODRES 4ZRL MSE A 725 MET MODIFIED RESIDUE MODRES 4ZRL MSE A 762 MET MODIFIED RESIDUE MODRES 4ZRL MSE A 890 MET MODIFIED RESIDUE MODRES 4ZRL MSE A 916 MET MODIFIED RESIDUE MODRES 4ZRL MSE B 34 MET MODIFIED RESIDUE MODRES 4ZRL MSE B 70 MET MODIFIED RESIDUE HET MSE A 546 8 HET MSE A 566 8 HET MSE A 576 8 HET MSE A 607 8 HET MSE A 612 8 HET MSE A 725 8 HET MSE A 762 8 HET MSE A 890 8 HET MSE A 916 8 HET MSE B 34 8 HET MSE B 70 8 HET CL A1001 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 HOH *115(H2 O) HELIX 1 AA1 ASP A 547 SER A 561 1 15 HELIX 2 AA2 THR A 563 SER A 582 1 20 HELIX 3 AA3 GLY A 594 LEU A 597 5 4 HELIX 4 AA4 ASN A 622 GLN A 636 1 15 HELIX 5 AA5 ALA A 660 ASP A 663 5 4 HELIX 6 AA6 SER A 674 SER A 687 1 14 HELIX 7 AA7 ARG A 692 LYS A 707 1 16 HELIX 8 AA8 THR A 718 GLY A 733 1 16 HELIX 9 AA9 ASN A 740 TYR A 745 1 6 HELIX 10 AB1 ASP A 754 LEU A 758 5 5 HELIX 11 AB2 THR A 780 TYR A 792 1 13 HELIX 12 AB3 ALA A 793 TYR A 798 5 6 HELIX 13 AB4 TRP A 868 CYS A 872 5 5 HELIX 14 AB5 SER A 885 HIS A 910 1 26 HELIX 15 AB6 ASP A 911 GLU A 917 1 7 HELIX 16 AB7 ASP B 27 ALA B 41 1 15 HELIX 17 AB8 SER B 47 ASN B 56 1 10 HELIX 18 AB9 HIS B 62 GLN B 65 5 4 HELIX 19 AC1 GLN B 66 ASN B 83 1 18 SHEET 1 AA1 5 GLY A 589 VAL A 593 0 SHEET 2 AA1 5 ASP A 606 MSE A 612 -1 O CYS A 610 N TYR A 591 SHEET 3 AA1 5 THR A 666 ALA A 671 1 O ASP A 668 N LEU A 609 SHEET 4 AA1 5 ILE A 653 PHE A 658 -1 N ILE A 656 O VAL A 667 SHEET 5 AA1 5 VAL A 641 ILE A 647 -1 N ILE A 647 O ILE A 653 LINK C MSE A 546 N ASP A 547 1555 1555 1.33 LINK C GLU A 565 N MSE A 566 1555 1555 1.33 LINK C MSE A 566 N LEU A 567 1555 1555 1.33 LINK C ASP A 575 N MSE A 576 1555 1555 1.33 LINK C MSE A 576 N LEU A 577 1555 1555 1.33 LINK C ASP A 606 N MSE A 607 1555 1555 1.33 LINK C MSE A 607 N ASP A 608 1555 1555 1.32 LINK C LEU A 611 N MSE A 612 1555 1555 1.33 LINK C MSE A 612 N ILE A 613 1555 1555 1.33 LINK C LEU A 724 N MSE A 725 1555 1555 1.33 LINK C MSE A 725 N VAL A 726 1555 1555 1.33 LINK C THR A 761 N MSE A 762 1555 1555 1.33 LINK C MSE A 762 N ALA A 763 1555 1555 1.33 LINK C GLU A 889 N MSE A 890 1555 1555 1.33 LINK C MSE A 890 N VAL A 891 1555 1555 1.33 LINK C LEU A 915 N MSE A 916 1555 1555 1.33 LINK C MSE A 916 N GLU A 917 1555 1555 1.33 LINK C GLN B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N ALA B 35 1555 1555 1.33 LINK C GLN B 69 N MSE B 70 1555 1555 1.33 LINK C MSE B 70 N ALA B 71 1555 1555 1.33 SITE 1 AC1 4 SER A 595 ASN A 598 LYS A 701 VAL A 723 CRYST1 50.655 89.367 94.666 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019741 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011190 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010563 0.00000 HETATM 1 N MSE A 546 -7.797 36.484 25.917 1.00 62.01 N HETATM 2 CA MSE A 546 -6.539 36.499 25.179 1.00 68.97 C HETATM 3 C MSE A 546 -6.426 35.319 24.221 1.00 66.47 C HETATM 4 O MSE A 546 -6.849 34.207 24.542 1.00 57.76 O HETATM 5 CB MSE A 546 -5.350 36.486 26.141 1.00 61.67 C HETATM 6 CG MSE A 546 -5.031 37.824 26.781 1.00 81.94 C HETATM 7 SE MSE A 546 -3.348 37.763 27.769 1.00105.86 SE HETATM 8 CE MSE A 546 -3.807 36.383 29.072 1.00 74.99 C