HEADER TRANSFERASE 12-MAY-15 4ZRR TITLE CRYSTAL STRUCTURE OF MONOMERIC BACTERIOPHYTOCHROME MUTANT D207L Y263F TITLE 2 AT 1.5 A RESOLUTION USING A HOME SOURCE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: BACTERIOPHYTOCHROME; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHYTOCHROME-LIKE PROTEIN; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: T7 EXPRESSION VECTOR IS ON THE N-TERMINAL END AND IS COMPND 9 PRESENT IN THE CRYSTALLIZED PROTEIN BUT NOT SEEN. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / SOURCE 5 NCIMB 9279 / R1 / VKM B-1422; SOURCE 6 GENE: BPHP, DR_A0050; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 10 EXPRESSION_SYSTEM_VARIANT: DE3; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS BACTERIOPHYTOCHROME, PAS, GAF, BILIVERDIN, SIGNALING PROTEIN, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.BHATTACHARYA,K.A.SATYSHUR,H.LEHTIVUORI,K.T.FOREST REVDAT 4 27-SEP-23 4ZRR 1 COMPND HETNAM REVDAT 3 04-DEC-19 4ZRR 1 JRNL REVDAT 2 20-SEP-17 4ZRR 1 REMARK REVDAT 1 20-JAN-16 4ZRR 0 JRNL AUTH H.LEHTIVUORI,S.BHATTACHARYA,N.M.ANGENENT-MARI,K.A.SATYSHUR, JRNL AUTH 2 K.T.FOREST JRNL TITL REMOVAL OF CHROMOPHORE-PROXIMAL POLAR ATOMS DECREASES WATER JRNL TITL 2 CONTENT AND INCREASES FLUORESCENCE IN A NEAR INFRARED JRNL TITL 3 PHYTOFLUOR. JRNL REF FRONT MOL BIOSCI V. 2 65 2015 JRNL REFN ESSN 2296-889X JRNL PMID 26636092 JRNL DOI 10.3389/FMOLB.2015.00065 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 52043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2709 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.51 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3362 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2362 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 105 REMARK 3 SOLVENT ATOMS : 288 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.082 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.071 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.403 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2641 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2581 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3627 ; 1.389 ; 2.019 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5865 ; 1.026 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 6.303 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;37.317 ;23.019 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;13.078 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ; 9.571 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3002 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 589 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1289 ; 1.100 ; 1.663 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1288 ; 1.096 ; 1.661 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1625 ; 1.398 ; 2.492 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1626 ; 1.398 ; 2.494 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1352 ; 1.199 ; 1.905 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1353 ; 1.199 ; 1.906 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1999 ; 1.394 ; 2.766 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3082 ; 2.590 ;14.561 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3083 ; 2.590 ;14.566 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5222 ; 0.999 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 61 ;27.097 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5370 ; 6.543 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4ZRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000208075. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER AXS MICROSTAR REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GOEBEL MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER SMART 6000 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54864 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 47.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 14.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.17900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.830 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4O8G REMARK 200 REMARK 200 REMARK: GREEN PRISMATIC CRYSTALS. REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS OF D207L-Y263F PHYTOCHROME REMARK 280 MUTANT WERE GROWN FROM HANGING DROP VAPOR DIFFUSION IN 20% REMARK 280 PEG400, STARTING PROTEIN CONCENTRATION OF 20 MG/ML, AND 0.1M REMARK 280 PHOSPHATE CITRATE BUFFER AT PH 4.0., VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.40950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.52300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.40950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.52300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 PRO A 5 REMARK 465 LEU A 6 REMARK 465 ALA A 131 REMARK 465 TRP A 132 REMARK 465 ASP A 133 REMARK 465 SER A 134 REMARK 465 THR A 135 REMARK 465 GLY A 136 REMARK 465 PRO A 137 REMARK 465 HIS A 324 REMARK 465 HIS A 325 REMARK 465 HIS A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 24 HBA2 LBW A 402 0.96 REMARK 500 SG CYS A 24 HBA3 LBV A 401 1.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 301 CB - CG - CD1 ANGL. DEV. = 13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 31.42 -142.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LBV A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LBW A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3S7Q RELATED DB: PDB DBREF 4ZRR A 1 321 UNP Q9RZA4 BPHY_DEIRA 1 321 SEQADV 4ZRR MET A -13 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR ALA A -12 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR SER A -11 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR MET A -10 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR THR A -9 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR GLY A -8 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR GLY A -7 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR GLN A -6 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR GLN A -5 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR MET A -4 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR GLY A -3 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR ARG A -2 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR GLY A -1 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR SER A 0 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR SER A 145 UNP Q9RZA4 PHE 145 ENGINEERED MUTATION SEQADV 4ZRR LEU A 207 UNP Q9RZA4 ASP 207 ENGINEERED MUTATION SEQADV 4ZRR PHE A 263 UNP Q9RZA4 TYR 263 ENGINEERED MUTATION SEQADV 4ZRR GLU A 311 UNP Q9RZA4 LEU 311 ENGINEERED MUTATION SEQADV 4ZRR GLU A 314 UNP Q9RZA4 LEU 314 ENGINEERED MUTATION SEQADV 4ZRR LEU A 322 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR GLU A 323 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR HIS A 324 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR HIS A 325 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR HIS A 326 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR HIS A 327 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR HIS A 328 UNP Q9RZA4 EXPRESSION TAG SEQADV 4ZRR HIS A 329 UNP Q9RZA4 EXPRESSION TAG SEQRES 1 A 343 MET ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SEQRES 2 A 343 SER MET SER ARG ASP PRO LEU PRO PHE PHE PRO PRO LEU SEQRES 3 A 343 TYR LEU GLY GLY PRO GLU ILE THR THR GLU ASN CYS GLU SEQRES 4 A 343 ARG GLU PRO ILE HIS ILE PRO GLY SER ILE GLN PRO HIS SEQRES 5 A 343 GLY ALA LEU LEU THR ALA ASP GLY HIS SER GLY GLU VAL SEQRES 6 A 343 LEU GLN MET SER LEU ASN ALA ALA THR PHE LEU GLY GLN SEQRES 7 A 343 GLU PRO THR VAL LEU ARG GLY GLN THR LEU ALA ALA LEU SEQRES 8 A 343 LEU PRO GLU GLN TRP PRO ALA LEU GLN ALA ALA LEU PRO SEQRES 9 A 343 PRO GLY CYS PRO ASP ALA LEU GLN TYR ARG ALA THR LEU SEQRES 10 A 343 ASP TRP PRO ALA ALA GLY HIS LEU SER LEU THR VAL HIS SEQRES 11 A 343 ARG VAL GLY GLU LEU LEU ILE LEU GLU PHE GLU PRO THR SEQRES 12 A 343 GLU ALA TRP ASP SER THR GLY PRO HIS ALA LEU ARG ASN SEQRES 13 A 343 ALA MET SER ALA LEU GLU SER ALA PRO ASN LEU ARG ALA SEQRES 14 A 343 LEU ALA GLU VAL ALA THR GLN THR VAL ARG GLU LEU THR SEQRES 15 A 343 GLY PHE ASP ARG VAL MET LEU TYR LYS PHE ALA PRO ASP SEQRES 16 A 343 ALA THR GLY GLU VAL ILE ALA GLU ALA ARG ARG GLU GLY SEQRES 17 A 343 LEU HIS ALA PHE LEU GLY HIS ARG PHE PRO ALA SER LEU SEQRES 18 A 343 ILE PRO ALA GLN ALA ARG ALA LEU TYR THR ARG HIS LEU SEQRES 19 A 343 LEU ARG LEU THR ALA ASP THR ARG ALA ALA ALA VAL PRO SEQRES 20 A 343 LEU ASP PRO VAL LEU ASN PRO GLN THR ASN ALA PRO THR SEQRES 21 A 343 PRO LEU GLY GLY ALA VAL LEU ARG ALA THR SER PRO MET SEQRES 22 A 343 HIS MET GLN PHE LEU ARG ASN MET GLY VAL GLY SER SER SEQRES 23 A 343 LEU SER VAL SER VAL VAL VAL GLY GLY GLN LEU TRP GLY SEQRES 24 A 343 LEU ILE ALA CYS HIS HIS GLN THR PRO TYR VAL LEU PRO SEQRES 25 A 343 PRO ASP LEU ARG THR THR LEU GLU TYR LEU GLY ARG GLU SEQRES 26 A 343 LEU SER GLU GLN VAL GLN VAL LYS GLU ALA LEU GLU HIS SEQRES 27 A 343 HIS HIS HIS HIS HIS HET LBV A 401 78 HET LBW A 402 78 HET PO4 A 403 5 HET PEG A 404 17 HET PEG A 405 17 HETNAM LBV 3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3- HETNAM 2 LBV METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4- HETNAM 3 LBV METHYL-PYRROL-1-IUM -2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3- HETNAM 4 LBV ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2- HETNAM 5 LBV YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3- YL]PROPANOIC HETNAM 6 LBV ACID HETNAM LBW 3-[2-[(Z)-[5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE- HETNAM 2 LBW PYRROL-2-YLIDENE)METHYL]-3-(3-HYDROXY-3-OXOPROPYL)-4- HETNAM 3 LBW METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E,4R)- HETNAM 4 LBW 3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2- HETNAM 5 LBW YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC ACID HETNAM PO4 PHOSPHATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN LBV 2(R),3(E)- PHYTOCHROMOBILIN FORMUL 2 LBV C33 H37 N4 O6 1+ FORMUL 3 LBW C33 H37 N4 O6 1+ FORMUL 4 PO4 O4 P 3- FORMUL 5 PEG 2(C4 H10 O3) FORMUL 7 HOH *288(H2 O) HELIX 1 AA1 PRO A 11 GLY A 15 5 5 HELIX 2 AA2 ASN A 23 GLU A 27 5 5 HELIX 3 AA3 ASN A 57 GLY A 63 1 7 HELIX 4 AA4 GLU A 65 ARG A 70 1 6 HELIX 5 AA5 THR A 73 LEU A 78 1 6 HELIX 6 AA6 GLN A 81 LEU A 89 1 9 HELIX 7 AA7 ALA A 139 ALA A 150 1 12 HELIX 8 AA8 ASN A 152 GLY A 169 1 18 HELIX 9 AA9 PRO A 204 ILE A 208 5 5 HELIX 10 AB1 PRO A 209 HIS A 219 1 11 HELIX 11 AB2 SER A 257 MET A 267 1 11 HELIX 12 AB3 PRO A 298 GLU A 323 1 26 SHEET 1 AA1 7 SER A 34 ILE A 35 0 SHEET 2 AA1 7 VAL A 232 ASP A 235 -1 O VAL A 232 N ILE A 35 SHEET 3 AA1 7 VAL A 51 SER A 55 -1 N MET A 54 O ASP A 235 SHEET 4 AA1 7 ALA A 40 ASP A 45 -1 N THR A 43 O LEU A 52 SHEET 5 AA1 7 LEU A 121 PRO A 128 -1 O LEU A 124 N LEU A 42 SHEET 6 AA1 7 GLY A 109 VAL A 118 -1 N SER A 112 O GLU A 127 SHEET 7 AA1 7 TYR A 99 TRP A 105 -1 N TRP A 105 O GLY A 109 SHEET 1 AA2 6 ARG A 202 PHE A 203 0 SHEET 2 AA2 6 GLY A 184 ARG A 191 -1 N GLY A 184 O PHE A 203 SHEET 3 AA2 6 ARG A 172 PHE A 178 -1 N LYS A 177 O GLU A 185 SHEET 4 AA2 6 GLN A 282 HIS A 291 -1 O LEU A 286 N TYR A 176 SHEET 5 AA2 6 SER A 271 VAL A 279 -1 N LEU A 273 O CYS A 289 SHEET 6 AA2 6 LEU A 221 THR A 224 -1 N THR A 224 O SER A 272 LINK SG CYS A 24 CBAALBV A 401 1555 1555 1.80 LINK SG CYS A 24 CBABLBW A 402 1555 1555 1.81 CISPEP 1 ASP A 235 PRO A 236 0 -13.11 SITE 1 AC1 24 CYS A 24 MET A 174 TYR A 176 PHE A 203 SITE 2 AC1 24 LEU A 207 ILE A 208 PRO A 209 TYR A 216 SITE 3 AC1 24 ARG A 254 THR A 256 SER A 257 HIS A 260 SITE 4 AC1 24 PHE A 263 SER A 272 SER A 274 HIS A 290 SITE 5 AC1 24 LBW A 402 HOH A 515 HOH A 516 HOH A 524 SITE 6 AC1 24 HOH A 571 HOH A 628 HOH A 659 HOH A 755 SITE 1 AC2 23 CYS A 24 MET A 174 TYR A 176 PHE A 198 SITE 2 AC2 23 PHE A 203 LEU A 207 ILE A 208 PRO A 209 SITE 3 AC2 23 TYR A 216 ARG A 254 SER A 257 MET A 259 SITE 4 AC2 23 HIS A 260 PHE A 263 SER A 272 SER A 274 SITE 5 AC2 23 HIS A 290 LBV A 401 HOH A 515 HOH A 516 SITE 6 AC2 23 HOH A 571 HOH A 628 HOH A 659 SITE 1 AC3 7 ARG A 165 ARG A 192 GLU A 193 ARG A 202 SITE 2 AC3 7 HOH A 520 HOH A 528 HOH A 566 SITE 1 AC4 6 GLY A 15 GLY A 16 PRO A 17 GLU A 18 SITE 2 AC4 6 ARG A 265 ASN A 266 SITE 1 AC5 6 PHE A 178 ALA A 179 PRO A 180 ALA A 182 SITE 2 AC5 6 LEU A 283 HOH A 672 CRYST1 94.819 55.046 69.797 90.00 91.89 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010546 0.000000 0.000349 0.00000 SCALE2 0.000000 0.018167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014335 0.00000