HEADER HYDROLASE 12-MAY-15 4ZRX TITLE CRYSTAL STRUCTURE OF A PUTATIVE ALPHA-L-FUCOSIDASE (BACOVA_04357) FROM TITLE 2 BACTEROIDES OVATUS ATCC 8483 AT 1.59 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: F5/8 TYPE C DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES OVATUS; SOURCE 3 ORGANISM_TAXID: 411476; SOURCE 4 STRAIN: ATCC 8483 / DSM 1896 / JCM 5824 / NCTC 11153; SOURCE 5 GENE: BACOVA_04357; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS SUGAR BINDING PROTEIN, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 23-OCT-24 4ZRX 1 REMARK REVDAT 4 01-FEB-23 4ZRX 1 REMARK SEQADV REVDAT 3 24-JAN-18 4ZRX 1 JRNL REVDAT 2 22-NOV-17 4ZRX 1 SOURCE REMARK REVDAT 1 27-MAY-15 4ZRX 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE ALPHA-L-FUCOSIDASE JRNL TITL 2 (BACOVA_04357) FROM BACTEROIDES OVATUS ATCC 8483 AT 1.59 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 81838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4082 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.63 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5689 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 264 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4667 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 595 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.53 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : -2.14000 REMARK 3 B33 (A**2) : 2.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.077 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.061 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.623 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4930 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4640 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6695 ; 1.648 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10702 ; 0.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 615 ; 6.240 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;38.068 ;24.215 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;12.987 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;16.526 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 708 ; 0.108 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5628 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1162 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2364 ; 1.021 ; 1.758 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2363 ; 1.020 ; 1.758 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2964 ; 1.593 ; 2.633 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 485 REMARK 3 ORIGIN FOR THE GROUP (A): -36.2976 30.4237 -36.8204 REMARK 3 T TENSOR REMARK 3 T11: 0.0278 T22: 0.0441 REMARK 3 T33: 0.0025 T12: 0.0051 REMARK 3 T13: -0.0069 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5604 L22: 1.4846 REMARK 3 L33: 0.2203 L12: 0.2068 REMARK 3 L13: -0.0750 L23: -0.3363 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: 0.0354 S13: 0.0102 REMARK 3 S21: -0.1207 S22: -0.0105 S23: 0.0498 REMARK 3 S31: 0.0681 S32: -0.0069 S33: -0.0220 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 486 A 604 REMARK 3 ORIGIN FOR THE GROUP (A): -7.8787 31.4704 -1.4719 REMARK 3 T TENSOR REMARK 3 T11: 0.1790 T22: 0.1142 REMARK 3 T33: 0.0571 T12: 0.0190 REMARK 3 T13: -0.0842 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 1.8548 L22: 1.5968 REMARK 3 L33: 2.5488 L12: 0.0515 REMARK 3 L13: 0.8455 L23: 0.9584 REMARK 3 S TENSOR REMARK 3 S11: -0.0484 S12: -0.0575 S13: 0.1237 REMARK 3 S21: 0.0076 S22: -0.0487 S23: -0.1266 REMARK 3 S31: -0.1666 S32: -0.1611 S33: 0.0971 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. THE SAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. CONDITIONS. 3. EDO MODELED ARE PRESENT IN CRYO REMARK 3 CONDITION. 4. ATOM RECORDS CONTAIN SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORDS CONTAIN SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. REMARK 4 REMARK 4 4ZRX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .979230 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE NOVEMBER 3, 2014 REMARK 200 BUILT=20141118 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81860 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.590 REMARK 200 RESOLUTION RANGE LOW (A) : 28.599 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24.0% POLYETHYLENE GLYCOL 3350, 0.11M REMARK 280 POTASSIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.87700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLN A 21 REMARK 465 LYS A 22 REMARK 465 LYS A 23 REMARK 465 PRO A 605 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 77 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 101 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 150 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 446 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 461 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 461 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 29 -34.15 74.79 REMARK 500 GLU A 62 -46.57 72.05 REMARK 500 ASN A 90 70.49 -152.14 REMARK 500 GLU A 93 55.35 -155.35 REMARK 500 ILE A 238 -85.78 82.43 REMARK 500 TYR A 302 84.90 -151.67 REMARK 500 SER A 337 -82.44 -127.23 REMARK 500 ASN A 406 16.62 -143.87 REMARK 500 THR A 440 -93.79 -112.28 REMARK 500 LEU A 467 -137.50 48.50 REMARK 500 PHE A 535 -65.34 -130.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 707 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419057 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (21-605) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4ZRX A 21 605 UNP A7M2M0 A7M2M0_BACO1 21 605 SEQADV 4ZRX GLY A 0 UNP A7M2M0 EXPRESSION TAG SEQRES 1 A 586 GLY GLN LYS LYS GLU ASN TYR TYR VAL LYS HIS VAL GLU SEQRES 2 A 586 PHE PRO GLN SER ALA THR ILE GLU GLN LYS VAL ASP MSE SEQRES 3 A 586 ALA ALA ARG LEU VAL PRO THR PRO GLN GLN TYR ALA TRP SEQRES 4 A 586 GLN GLN MSE GLU LEU THR ALA PHE LEU HIS PHE GLY ILE SEQRES 5 A 586 ASN THR PHE THR GLY ARG GLU TRP GLY ASP GLY LYS GLU SEQRES 6 A 586 ASP PRO ALA LEU PHE ASN PRO SER GLU LEU ASP ALA GLU SEQRES 7 A 586 GLN TRP VAL ARG THR LEU LYS GLU ALA GLY PHE LYS MSE SEQRES 8 A 586 VAL LEU LEU THR ALA LYS HIS HIS ASP GLY PHE CYS LEU SEQRES 9 A 586 TRP PRO THR ALA THR THR LYS HIS SER VAL ALA SER SER SEQRES 10 A 586 PRO TRP LYS ASN GLY GLN GLY ASP VAL VAL LYS GLU LEU SEQRES 11 A 586 ARG ALA ALA CYS ASP LYS TYR ASP MSE LYS PHE GLY VAL SEQRES 12 A 586 TYR LEU SER PRO TRP ASP ARG ASN ALA GLU CYS TYR GLY SEQRES 13 A 586 ASP SER PRO ARG TYR ASN ASP PHE PHE ILE ARG GLN LEU SEQRES 14 A 586 THR GLU LEU LEU THR ASN TYR GLY GLU VAL HIS GLU VAL SEQRES 15 A 586 TRP PHE ASP GLY ALA ASN GLY GLU GLY PRO ASN GLY LYS SEQRES 16 A 586 LYS GLN VAL TYR ASP TRP ASP ALA PHE TYR GLN THR ILE SEQRES 17 A 586 GLN ARG LEU GLN PRO LYS ALA VAL MSE ALA ILE MSE GLY SEQRES 18 A 586 ASP ASP VAL ARG TRP VAL GLY ASN GLU LYS GLY VAL GLY SEQRES 19 A 586 ARG GLU THR GLU TRP ASN ALA THR VAL LEU THR PRO GLY SEQRES 20 A 586 ILE TYR ALA ARG SER GLN GLU ASN ASN LYS ARG LEU GLY SEQRES 21 A 586 VAL PHE SER LYS ALA GLU ASP LEU GLY SER ARG LYS ILE SEQRES 22 A 586 LEU GLU LYS ALA THR GLU LEU PHE TRP TYR PRO SER GLU SEQRES 23 A 586 VAL ASP VAL SER ILE ARG PRO GLY TRP PHE TYR HIS ALA SEQRES 24 A 586 GLU GLU ASP GLY LYS VAL LYS SER LEU LYS HIS LEU SER SEQRES 25 A 586 ASP ILE TYR PHE GLN SER VAL GLY TYR ASN SER VAL LEU SEQRES 26 A 586 LEU LEU ASN ILE PRO PRO ASP ARG ARG GLY LEU ILE HIS SEQRES 27 A 586 GLU ALA ASP ILE LYS ARG LEU LYS GLU PHE ALA ASP TYR SEQRES 28 A 586 ARG GLN GLN THR PHE ALA ASP ASN ARG VAL LYS ASN GLY SEQRES 29 A 586 ARG LYS TYR TRP SER THR THR SER GLY GLY GLU ALA VAL SEQRES 30 A 586 TYR ALA LEU LYS SER LYS SER GLU ILE ASN LEU VAL MSE SEQRES 31 A 586 LEU GLN GLU ASP ILE THR LYS GLY GLN ARG VAL GLU ALA SEQRES 32 A 586 PHE THR VAL GLU ALA LEU THR ASP ASN GLY TRP LYS GLU SEQRES 33 A 586 VAL GLY LYS GLY THR THR ILE GLY TYR LYS ARG MSE LEU SEQRES 34 A 586 ARG PHE PRO ALA VAL ASN ALA ASN LYS LEU ARG VAL ARG SEQRES 35 A 586 ILE ASP GLU CYS ARG LEU THR ALA TYR VAL SER GLN VAL SEQRES 36 A 586 ALA ALA TYR TYR ALA GLU PRO LEU GLN GLU GLU THR THR SEQRES 37 A 586 LYS GLU ASP TRP ASN ASN LEU PRO ARG SER GLY TRP LYS SEQRES 38 A 586 GLN VAL ALA ALA SER PRO LEU THR ILE ASP LEU GLY LYS SEQRES 39 A 586 THR VAL THR LEU SER SER PHE THR TYR ALA PRO SER LYS SEQRES 40 A 586 ALA GLU VAL LYS PRO THR MSE ALA PHE ARG TYR GLN PHE SEQRES 41 A 586 PHE VAL SER MSE ASP GLY LYS SER TRP LYS GLU VAL PRO SEQRES 42 A 586 ALA SER GLY GLU PHE SER ASN ILE MSE HIS ASN PRO LEU SEQRES 43 A 586 PRO GLN THR VAL ALA PHE SER GLN LYS VAL GLN ALA ARG SEQRES 44 A 586 PHE ILE LYS LEU GLU ALA THR THR PRO ASP ALA THR VAL SEQRES 45 A 586 ALA LYS VAL ASN MSE ASN GLU ILE GLY VAL MSE VAL ILE SEQRES 46 A 586 PRO MODRES 4ZRX MSE A 45 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 61 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 110 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 158 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 236 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 239 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 409 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 447 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 533 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 543 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 561 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 596 MET MODIFIED RESIDUE MODRES 4ZRX MSE A 602 MET MODIFIED RESIDUE HET MSE A 45 8 HET MSE A 61 8 HET MSE A 110 8 HET MSE A 158 8 HET MSE A 236 8 HET MSE A 239 8 HET MSE A 409 13 HET MSE A 447 13 HET MSE A 533 8 HET MSE A 543 8 HET MSE A 561 8 HET MSE A 596 8 HET MSE A 602 8 HET EDO A 701 4 HET EDO A 702 4 HET EDO A 703 4 HET EDO A 704 4 HET EDO A 705 4 HET EDO A 706 4 HET EDO A 707 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 2 EDO 7(C2 H6 O2) FORMUL 9 HOH *595(H2 O) HELIX 1 AA1 THR A 38 ALA A 47 1 10 HELIX 2 AA2 THR A 52 GLU A 62 1 11 HELIX 3 AA3 GLY A 70 GLY A 76 1 7 HELIX 4 AA4 ASP A 85 PHE A 89 5 5 HELIX 5 AA5 ASP A 95 ALA A 106 1 12 HELIX 6 AA6 SER A 132 SER A 136 5 5 HELIX 7 AA7 PRO A 137 GLN A 142 5 6 HELIX 8 AA8 ASP A 144 ASP A 157 1 14 HELIX 9 AA9 ASP A 176 ASN A 194 1 19 HELIX 10 AB1 ASP A 219 GLN A 231 1 13 HELIX 11 AB2 ARG A 270 GLY A 279 1 10 HELIX 12 AB3 SER A 289 GLU A 294 1 6 HELIX 13 AB4 HIS A 317 VAL A 324 5 8 HELIX 14 AB5 SER A 326 GLN A 336 1 11 HELIX 15 AB6 SER A 337 ASN A 341 5 5 HELIX 16 AB7 HIS A 357 ALA A 376 1 20 HELIX 17 AB8 ILE A 414 GLY A 417 5 4 HELIX 18 AB9 PRO A 495 TRP A 499 5 5 HELIX 19 AC1 PRO A 524 GLU A 528 5 5 HELIX 20 AC2 ASN A 595 ASN A 597 5 3 SHEET 1 AA1 2 TYR A 27 VAL A 28 0 SHEET 2 AA1 2 LEU A 49 VAL A 50 1 O VAL A 50 N TYR A 27 SHEET 1 AA2 3 HIS A 30 GLU A 32 0 SHEET 2 AA2 3 GLU A 298 TRP A 301 -1 O LEU A 299 N VAL A 31 SHEET 3 AA2 3 ALA A 260 THR A 261 -1 N THR A 261 O PHE A 300 SHEET 1 AA3 8 VAL A 235 ILE A 238 0 SHEET 2 AA3 8 GLU A 200 PHE A 203 1 N VAL A 201 O ALA A 237 SHEET 3 AA3 8 LYS A 159 LEU A 164 1 N VAL A 162 O TRP A 202 SHEET 4 AA3 8 MSE A 110 LYS A 116 1 N LEU A 113 O TYR A 163 SHEET 5 AA3 8 LEU A 63 LEU A 67 1 N ALA A 65 O MSE A 110 SHEET 6 AA3 8 VAL A 343 ASN A 347 1 O LEU A 344 N THR A 64 SHEET 7 AA3 8 SER A 304 SER A 309 1 N VAL A 306 O LEU A 345 SHEET 8 AA3 8 ARG A 244 TRP A 245 1 N ARG A 244 O GLU A 305 SHEET 1 AA4 6 TRP A 387 THR A 389 0 SHEET 2 AA4 6 ALA A 469 TYR A 477 -1 O VAL A 471 N TRP A 387 SHEET 3 AA4 6 GLY A 393 GLU A 412 -1 N MSE A 409 O ALA A 475 SHEET 4 AA4 6 ARG A 446 CYS A 465 -1 O LEU A 458 N TYR A 397 SHEET 5 AA4 6 VAL A 420 THR A 429 -1 N GLU A 426 O ARG A 459 SHEET 6 AA4 6 GLY A 432 GLY A 439 -1 O GLY A 437 N VAL A 425 SHEET 1 AA5 5 LYS A 500 ALA A 503 0 SHEET 2 AA5 5 LEU A 507 TYR A 522 -1 O ASP A 510 N LYS A 500 SHEET 3 AA5 5 GLN A 567 THR A 585 -1 O VAL A 569 N PHE A 520 SHEET 4 AA5 5 ARG A 536 SER A 542 -1 N SER A 542 O PHE A 579 SHEET 5 AA5 5 LYS A 549 VAL A 551 -1 O VAL A 551 N PHE A 539 SHEET 1 AA6 3 LYS A 500 ALA A 503 0 SHEET 2 AA6 3 LEU A 507 TYR A 522 -1 O ASP A 510 N LYS A 500 SHEET 3 AA6 3 ILE A 599 VAL A 603 -1 O MSE A 602 N SER A 518 LINK C ASP A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N ALA A 46 1555 1555 1.32 LINK C GLN A 60 N MSE A 61 1555 1555 1.33 LINK C MSE A 61 N GLU A 62 1555 1555 1.33 LINK C LYS A 109 N MSE A 110 1555 1555 1.32 LINK C MSE A 110 N VAL A 111 1555 1555 1.31 LINK C ASP A 157 N MSE A 158 1555 1555 1.34 LINK C MSE A 158 N LYS A 159 1555 1555 1.33 LINK C VAL A 235 N MSE A 236 1555 1555 1.32 LINK C MSE A 236 N ALA A 237 1555 1555 1.34 LINK C ILE A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N GLY A 240 1555 1555 1.32 LINK C VAL A 408 N MSE A 409 1555 1555 1.32 LINK C MSE A 409 N LEU A 410 1555 1555 1.32 LINK C ARG A 446 N MSE A 447 1555 1555 1.33 LINK C MSE A 447 N LEU A 448 1555 1555 1.32 LINK C THR A 532 N MSE A 533 1555 1555 1.33 LINK C MSE A 533 N ALA A 534 1555 1555 1.33 LINK C SER A 542 N MSE A 543 1555 1555 1.32 LINK C MSE A 543 N ASP A 544 1555 1555 1.34 LINK C ILE A 560 N MSE A 561 1555 1555 1.33 LINK C MSE A 561 N HIS A 562 1555 1555 1.33 LINK C ASN A 595 N MSE A 596 1555 1555 1.32 LINK C MSE A 596 N ASN A 597 1555 1555 1.34 LINK C VAL A 601 N MSE A 602 1555 1555 1.34 LINK C MSE A 602 N VAL A 603 1555 1555 1.33 CISPEP 1 SER A 505 PRO A 506 0 4.64 SITE 1 AC1 7 ASP A 204 GLY A 205 ALA A 206 ILE A 238 SITE 2 AC1 7 TRP A 245 HOH A 815 HOH A 989 SITE 1 AC2 5 PRO A 51 TYR A 56 THR A 415 EDO A 707 SITE 2 AC2 5 HOH A 930 SITE 1 AC3 7 HIS A 68 HIS A 117 TYR A 163 ASP A 204 SITE 2 AC3 7 GLU A 249 TRP A 314 HOH A1218 SITE 1 AC4 6 PRO A 506 LEU A 507 LEU A 582 GLU A 583 SITE 2 AC4 6 ALA A 584 ALA A 592 SITE 1 AC5 6 GLU A 62 TYR A 334 MSE A 409 LYS A 445 SITE 2 AC5 6 MSE A 447 HOH A 961 SITE 1 AC6 4 TYR A 334 ARG A 371 GLN A 372 HOH A 985 SITE 1 AC7 4 TYR A 56 EDO A 702 HOH A 837 HOH A1068 CRYST1 63.021 71.754 73.106 90.00 106.98 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015868 0.000000 0.004845 0.00000 SCALE2 0.000000 0.013937 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014302 0.00000