HEADER TRANSFERASE 15-MAY-15 4ZTY TITLE NEUROSPORA CRASSA COBALAMIN-INDEPENDENT METHIONINE SYNTHASE COMPLEXED TITLE 2 WITH CD2+ COMPND MOL_ID: 1; COMPND 2 MOLECULE: COBALAMIN-INDEPENDENT METHIONINE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.1.1.14 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEUROSPORA CRASSA; SOURCE 3 ORGANISM_TAXID: 5141 KEYWDS HOMOCYSTEINE, METHYLTETRAHYDROFOLATE, TIM BARREL (ALPHA/BETA BARREL), KEYWDS 2 METHIONINE SYNTHESIS, METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.W.WHEATLEY,K.K.NG,M.KAPOOR REVDAT 6 06-MAR-24 4ZTY 1 LINK REVDAT 5 08-JAN-20 4ZTY 1 REMARK REVDAT 4 13-SEP-17 4ZTY 1 JRNL REMARK REVDAT 3 06-JAN-16 4ZTY 1 JRNL REVDAT 2 30-DEC-15 4ZTY 1 JRNL REVDAT 1 09-DEC-15 4ZTY 0 JRNL AUTH R.W.WHEATLEY,K.K.NG,M.KAPOOR JRNL TITL FUNGAL COBALAMIN-INDEPENDENT METHIONINE SYNTHASE: INSIGHTS JRNL TITL 2 FROM THE MODEL ORGANISM, NEUROSPORA CRASSA. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 590 125 2015 JRNL REFN ESSN 1096-0384 JRNL PMID 26657067 JRNL DOI 10.1016/J.ABB.2015.11.037 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.030 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 133724 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 6698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0309 - 5.8353 1.00 4252 232 0.1529 0.1760 REMARK 3 2 5.8353 - 4.6341 1.00 4264 230 0.1293 0.1786 REMARK 3 3 4.6341 - 4.0490 0.99 4302 183 0.1144 0.1327 REMARK 3 4 4.0490 - 3.6791 1.00 4254 206 0.1263 0.1750 REMARK 3 5 3.6791 - 3.4156 1.00 4227 258 0.1357 0.1826 REMARK 3 6 3.4156 - 3.2143 1.00 4255 280 0.1383 0.1829 REMARK 3 7 3.2143 - 3.0534 1.00 4222 243 0.1456 0.1783 REMARK 3 8 3.0534 - 2.9205 0.99 4272 223 0.1512 0.2089 REMARK 3 9 2.9205 - 2.8081 0.99 4127 260 0.1540 0.1836 REMARK 3 10 2.8081 - 2.7112 1.00 4359 191 0.1526 0.2032 REMARK 3 11 2.7112 - 2.6265 1.00 4236 236 0.1476 0.2068 REMARK 3 12 2.6265 - 2.5514 1.00 4288 222 0.1582 0.2004 REMARK 3 13 2.5514 - 2.4843 1.00 4255 183 0.1657 0.1861 REMARK 3 14 2.4843 - 2.4237 1.00 4292 226 0.1653 0.2390 REMARK 3 15 2.4237 - 2.3686 1.00 4223 208 0.1759 0.2322 REMARK 3 16 2.3686 - 2.3182 0.99 4237 247 0.1753 0.2267 REMARK 3 17 2.3182 - 2.2718 1.00 4255 206 0.1759 0.2506 REMARK 3 18 2.2718 - 2.2289 0.99 4213 241 0.1722 0.2410 REMARK 3 19 2.2289 - 2.1891 0.99 4253 238 0.1735 0.2380 REMARK 3 20 2.1891 - 2.1520 0.99 4259 246 0.1778 0.2340 REMARK 3 21 2.1520 - 2.1173 1.00 4223 205 0.1785 0.2291 REMARK 3 22 2.1173 - 2.0847 0.99 4243 213 0.1879 0.2452 REMARK 3 23 2.0847 - 2.0541 0.99 4226 203 0.2186 0.2607 REMARK 3 24 2.0541 - 2.0252 0.99 4221 258 0.2178 0.2611 REMARK 3 25 2.0252 - 1.9978 0.99 4238 199 0.2125 0.2436 REMARK 3 26 1.9978 - 1.9718 0.98 4247 204 0.2011 0.2363 REMARK 3 27 1.9718 - 1.9472 0.98 4107 226 0.2161 0.2469 REMARK 3 28 1.9472 - 1.9237 0.97 4198 231 0.2155 0.3133 REMARK 3 29 1.9237 - 1.9014 0.97 4140 208 0.2189 0.2681 REMARK 3 30 1.9014 - 1.8800 0.96 4138 192 0.2456 0.2877 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6294 REMARK 3 ANGLE : 1.023 8504 REMARK 3 CHIRALITY : 0.040 939 REMARK 3 PLANARITY : 0.005 1105 REMARK 3 DIHEDRAL : 13.147 2349 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209893. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54980 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 494614 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 39.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.12200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.01300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.5.0109 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% W/V PEG3350, 200 MM POTASSIUM REMARK 280 NITRATE, 1 MM TCEP, 20% V/V GLYCEROL, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.02250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.56200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.59900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.56200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.02250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.59900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 5419 O HOH A 5493 2.05 REMARK 500 OE2 GLU A 676 SG CYS A 737 2.12 REMARK 500 O HOH A 5542 O HOH A 5545 2.14 REMARK 500 O HOH A 5663 O HOH A 5716 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 66 -54.91 -140.95 REMARK 500 PHE A 117 -127.19 52.63 REMARK 500 PHE A 661 -14.37 -151.92 REMARK 500 ASN A 677 -18.09 -148.42 REMARK 500 ARG A 695 -169.65 -110.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A5501 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A5517 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A5523 DISTANCE = 7.82 ANGSTROMS REMARK 525 HOH A5787 DISTANCE = 7.39 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1000 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 652 NE2 REMARK 620 2 CYS A 654 SG 98.0 REMARK 620 3 GLU A 676 OE2 128.7 90.3 REMARK 620 4 CYS A 737 SG 120.5 130.5 88.4 REMARK 620 5 CYS A 737 SG 115.8 138.1 49.7 50.7 REMARK 620 6 HOH A5805 O 90.8 91.7 139.7 60.5 110.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1001 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 654 SG REMARK 620 2 HOH A5684 O 96.4 REMARK 620 3 HOH A5777 O 99.5 72.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1003 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 654 O REMARK 620 2 GLU A 676 OE1 83.4 REMARK 620 3 GLU A 676 OE2 112.8 52.6 REMARK 620 4 HOH A5419 O 151.0 75.3 68.7 REMARK 620 5 HOH A5777 O 127.4 148.9 109.1 74.3 REMARK 620 6 HOH A5794 O 86.6 109.8 149.0 82.6 72.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1004 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 663 NE2 REMARK 620 2 GLU A 691 OE1 90.7 REMARK 620 3 GLU A 691 OE2 94.8 53.4 REMARK 620 4 HOH A5800 O 107.5 136.4 85.2 REMARK 620 5 HOH A5801 O 158.3 88.1 101.8 87.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A1002 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 676 OE2 REMARK 620 2 HIS A 705 NE2 130.2 REMARK 620 3 CYS A 737 SG 78.8 118.7 REMARK 620 4 CYS A 737 SG 49.4 106.9 46.6 REMARK 620 5 HOH A5419 O 68.1 99.0 140.8 114.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CD A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 3001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 3002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 3003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 3004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 3005 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZTX RELATED DB: PDB DBREF 4ZTY A 1 769 UNP Q8X1E4 Q8X1E4_NEUCS 1 769 SEQRES 1 A 769 MET VAL GLN SER SER VAL LEU GLY PHE PRO ARG MET GLY SEQRES 2 A 769 VAL LEU ARG ASP LEU LYS LYS ALA ASN GLU ALA TYR TRP SEQRES 3 A 769 ALA ASP LYS ILE SER GLN GLU ALA LEU LEU ALA GLU GLY SEQRES 4 A 769 LYS ARG LEU ARG LEU ALA HIS TRP LYS ILE GLN LYS ASP SEQRES 5 A 769 ALA GLY VAL ASP ILE ILE PRO SER ASN ASP PHE ALA HIS SEQRES 6 A 769 TYR ASP HIS VAL LEU ASP HIS ILE GLN LEU PHE ASN ALA SEQRES 7 A 769 VAL PRO GLU ARG TYR THR SER GLN LYS LEU SER PRO LEU SEQRES 8 A 769 ASP GLU TYR PHE ALA MET GLY ARG GLY HIS GLN LYS GLY SEQRES 9 A 769 GLY VAL ASP VAL PRO ALA LEU GLU MET VAL LYS TRP PHE SEQRES 10 A 769 ASP SER ASN TYR HIS TYR VAL LYS PRO THR LEU GLN ASP SEQRES 11 A 769 ASN GLN THR PHE SER LEU ALA LYS ASP PRO LYS PRO VAL SEQRES 12 A 769 ARG GLU PHE LEU GLU ALA LYS GLU ALA GLY PHE GLN THR SEQRES 13 A 769 ARG PRO VAL LEU VAL GLY PRO VAL SER PHE LEU ALA LEU SEQRES 14 A 769 GLY LYS ALA ASP ARG GLY SER SER VAL ASP PRO ILE THR SEQRES 15 A 769 LEU LEU ASP LYS LEU VAL PRO VAL TYR VAL GLU LEU LEU SEQRES 16 A 769 LYS GLN LEU LYS ALA ALA GLY ALA GLU SER VAL GLN ILE SEQRES 17 A 769 ASP GLU PRO VAL LEU VAL PHE ASP LEU ARG PRO GLU VAL SEQRES 18 A 769 LYS ALA ALA PHE LYS PRO ALA TYR GLU ALA ILE ALA ALA SEQRES 19 A 769 ALA GLY ASP ALA VAL PRO LYS VAL VAL VAL ALA THR TYR SEQRES 20 A 769 PHE GLY ASP ILE VAL HIS ASN PHE ASP VAL LEU PRO ALA SEQRES 21 A 769 PHE SER GLY ALA ALA GLY LEU HIS VAL ASP LEU VAL ARG SEQRES 22 A 769 ASN PRO GLU GLN LEU GLU PRO VAL LEU LYS GLN LEU GLY SEQRES 23 A 769 PRO ASN GLN ILE LEU SER ALA GLY VAL VAL ASP GLY ARG SEQRES 24 A 769 ASN ILE TRP LYS ASN ASP PHE ALA LYS SER LEU GLU ILE SEQRES 25 A 769 LEU GLN THR ALA VAL LYS ALA LEU GLY SER GLU ARG VAL SEQRES 26 A 769 ILE VAL ALA THR SER SER SER LEU ILE HIS THR PRO HIS SEQRES 27 A 769 THR LEU ALA SER GLU LYS LYS LEU PRO SER ASP VAL TYR SEQRES 28 A 769 GLU TRP PHE SER PHE ALA VAL GLU LYS VAL LYS GLU VAL SEQRES 29 A 769 ALA THR LEU ALA LYS ALA VAL THR GLU PRO GLU ALA VAL SEQRES 30 A 769 LYS ALA GLU LEU GLU ALA ASN ALA ALA ALA ILE LYS ALA SEQRES 31 A 769 ARG THR ASP SER LYS ARG THR ASN ASP PRO ALA VAL LYS SEQRES 32 A 769 GLU ARG GLN ALA GLN VAL THR PRO GLU GLN HIS ASN ARG SEQRES 33 A 769 LYS ALA PRO PHE ASN THR ARG TYR ALA GLU GLN LYS LYS SEQRES 34 A 769 HIS LEU SER LEU PRO LEU PHE PRO THR THR THR ILE GLY SEQRES 35 A 769 SER PHE PRO GLN THR SER GLU ILE ARG VAL GLN ARG ASN SEQRES 36 A 769 LYS PHE THR LYS GLY GLU ILE SER ALA GLU GLU TYR GLU SEQRES 37 A 769 ARG PHE ILE GLU LYS GLU ILE GLU LEU ALA VAL LYS ILE SEQRES 38 A 769 GLN ASP GLU LEU ASP LEU ASP VAL TYR VAL HIS GLY GLU SEQRES 39 A 769 PRO GLU ARG ASN ASP MET VAL GLN TYR PHE GLY GLU ARG SEQRES 40 A 769 LEU ASN GLY TYR VAL PHE THR THR HIS ALA TRP VAL GLN SEQRES 41 A 769 SER TYR GLY SER ARG CYS VAL ARG PRO PRO ILE ILE VAL SEQRES 42 A 769 GLY ASP ILE SER ARG PRO ALA PRO MET THR VAL LYS GLU SEQRES 43 A 769 SER LYS TYR ALA ALA SER ILE SER LYS LYS PRO MET LYS SEQRES 44 A 769 GLY MET LEU THR GLY PRO VAL THR CYS LEU ARG TRP SER SEQRES 45 A 769 PHE PRO ARG VAL ASP VAL HIS GLN SER VAL GLN CYS GLN SEQRES 46 A 769 GLN LEU ALA LEU ALA LEU ARG ASP GLU VAL VAL ASP LEU SEQRES 47 A 769 GLU LYS ASN GLY ILE TYR VAL ILE GLN VAL ASP GLU PRO SEQRES 48 A 769 ALA LEU ARG GLU GLY LEU PRO LEU ARG LYS GLY GLN GLU SEQRES 49 A 769 ARG GLU ALA TYR LEU LYS TRP ALA VAL ASP SER PHE LYS SEQRES 50 A 769 LEU ALA THR ALA GLY VAL GLU ASN SER THR GLN ILE HIS SEQRES 51 A 769 SER HIS PHE CYS TYR SER GLU PHE GLN ASP PHE PHE HIS SEQRES 52 A 769 ALA ILE ALA ALA LEU ASP ALA ASP VAL LEU SER ILE GLU SEQRES 53 A 769 ASN SER LYS SER ASP ALA LYS LEU LEU LYS VAL PHE ILE SEQRES 54 A 769 ASP GLU GLU TYR PRO ARG HIS ILE GLY PRO GLY VAL TYR SEQRES 55 A 769 ASP ILE HIS SER PRO ARG VAL PRO THR LEU GLU GLU PHE SEQRES 56 A 769 LYS GLN ARG ILE GLU GLU MET LEU ALA TYR LEU LYS PRO SEQRES 57 A 769 GLU GLN LEU TRP ILE ASN PRO ASP CYS GLY LEU LYS THR SEQRES 58 A 769 ARG LYS TRP ASP GLU VAL LYS GLY ALA LEU SER HIS MET SEQRES 59 A 769 VAL GLU ALA ALA LYS TYR PHE ARG GLU LYS TYR ALA ASN SEQRES 60 A 769 LYS ALA HET CD A1000 1 HET CD A1001 1 HET CD A1002 1 HET CD A1003 1 HET CD A1004 1 HET CD A1005 1 HET GOL A3001 6 HET GOL A3002 6 HET NO3 A3003 4 HET NO3 A3004 4 HET TRS A3005 8 HETNAM CD CADMIUM ION HETNAM GOL GLYCEROL HETNAM NO3 NITRATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 2 CD 6(CD 2+) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 10 NO3 2(N O3 1-) FORMUL 12 TRS C4 H12 N O3 1+ FORMUL 13 HOH *813(H2 O) HELIX 1 AA1 ARG A 16 ALA A 27 1 12 HELIX 2 AA2 SER A 31 GLY A 54 1 24 HELIX 3 AA3 ASP A 67 PHE A 76 1 10 HELIX 4 AA4 PRO A 80 SER A 85 1 6 HELIX 5 AA5 SER A 89 GLY A 100 1 12 HELIX 6 AA6 PRO A 140 ALA A 152 1 13 HELIX 7 AA7 GLY A 162 LEU A 169 1 8 HELIX 8 AA8 ASP A 179 THR A 182 5 4 HELIX 9 AA9 LEU A 183 GLY A 202 1 20 HELIX 10 AB1 PRO A 211 PHE A 215 5 5 HELIX 11 AB2 ARG A 218 ALA A 223 1 6 HELIX 12 AB3 ALA A 224 ALA A 235 1 12 HELIX 13 AB4 GLY A 236 VAL A 239 5 4 HELIX 14 AB5 ILE A 251 PHE A 255 5 5 HELIX 15 AB6 VAL A 257 SER A 262 5 6 HELIX 16 AB7 ASN A 274 GLU A 276 5 3 HELIX 17 AB8 GLN A 277 LYS A 283 1 7 HELIX 18 AB9 ASP A 305 GLY A 321 1 17 HELIX 19 AC1 SER A 332 THR A 336 5 5 HELIX 20 AC2 THR A 339 GLU A 343 5 5 HELIX 21 AC3 VAL A 350 PHE A 354 5 5 HELIX 22 AC4 PHE A 356 GLU A 373 1 18 HELIX 23 AC5 PRO A 374 ALA A 376 5 3 HELIX 24 AC6 VAL A 377 SER A 394 1 18 HELIX 25 AC7 LYS A 395 ASN A 398 5 4 HELIX 26 AC8 ASP A 399 GLN A 408 1 10 HELIX 27 AC9 VAL A 409 ASN A 415 5 7 HELIX 28 AD1 PRO A 419 SER A 432 1 14 HELIX 29 AD2 THR A 447 LYS A 459 1 13 HELIX 30 AD3 SER A 463 ASP A 486 1 24 HELIX 31 AD4 VAL A 501 GLU A 506 1 6 HELIX 32 AD5 THR A 543 ILE A 553 1 11 HELIX 33 AD6 GLY A 564 TRP A 571 1 8 HELIX 34 AD7 HIS A 579 ASN A 601 1 23 HELIX 35 AD8 GLY A 622 ALA A 641 1 20 HELIX 36 AD9 PHE A 661 LEU A 668 1 8 HELIX 37 AE1 ASP A 681 LEU A 684 5 4 HELIX 38 AE2 LEU A 685 GLU A 691 1 7 HELIX 39 AE3 THR A 711 LEU A 723 1 13 HELIX 40 AE4 LYS A 727 LEU A 731 5 5 HELIX 41 AE5 LYS A 743 TYR A 765 1 23 SHEET 1 AA1 8 GLN A 3 SER A 5 0 SHEET 2 AA1 8 VAL A 325 THR A 329 1 O VAL A 327 N GLN A 3 SHEET 3 AA1 8 ILE A 290 VAL A 296 1 N ALA A 293 O ILE A 326 SHEET 4 AA1 8 GLY A 266 ASP A 270 1 N LEU A 267 O SER A 292 SHEET 5 AA1 8 LYS A 241 ALA A 245 1 N VAL A 244 O HIS A 268 SHEET 6 AA1 8 SER A 205 ASP A 209 1 N ILE A 208 O VAL A 243 SHEET 7 AA1 8 THR A 156 VAL A 161 1 N PRO A 158 O GLN A 207 SHEET 8 AA1 8 ILE A 58 SER A 60 1 N ILE A 58 O ARG A 157 SHEET 1 AA2 2 MET A 113 LYS A 115 0 SHEET 2 AA2 2 HIS A 122 VAL A 124 -1 O TYR A 123 N VAL A 114 SHEET 1 AA3 2 THR A 127 LEU A 128 0 SHEET 2 AA3 2 LYS A 171 ALA A 172 1 O LYS A 171 N LEU A 128 SHEET 1 AA4 2 ASN A 509 VAL A 512 0 SHEET 2 AA4 2 ILE A 531 SER A 537 -1 O VAL A 533 N GLY A 510 SHEET 1 AA5 2 VAL A 519 TYR A 522 0 SHEET 2 AA5 2 ARG A 525 VAL A 527 -1 O VAL A 527 N VAL A 519 SHEET 1 AA6 5 LYS A 559 THR A 563 0 SHEET 2 AA6 5 VAL A 605 ASP A 609 1 O VAL A 605 N GLY A 560 SHEET 3 AA6 5 GLN A 648 PHE A 653 1 O HIS A 650 N VAL A 608 SHEET 4 AA6 5 VAL A 672 ILE A 675 1 O SER A 674 N PHE A 653 SHEET 5 AA6 5 HIS A 696 PRO A 699 1 O GLY A 698 N LEU A 673 LINK OE1 GLU A 426 CD CD A1005 1555 1555 2.46 LINK NE2 HIS A 652 CD CD A1000 1555 1555 2.30 LINK SG CYS A 654 CD CD A1000 1555 1555 2.53 LINK SG CYS A 654 CD CD A1001 1555 1555 2.50 LINK O CYS A 654 CD CD A1003 1555 1555 2.39 LINK NE2 HIS A 663 CD CD A1004 1555 1555 2.30 LINK OE2 GLU A 676 CD CD A1000 1555 1555 2.48 LINK OE2 GLU A 676 CD CD A1002 1555 1555 2.58 LINK OE1 GLU A 676 CD CD A1003 1555 1555 2.43 LINK OE2 GLU A 676 CD CD A1003 1555 1555 2.53 LINK OE1 GLU A 691 CD CD A1004 1555 1555 2.47 LINK OE2 GLU A 691 CD CD A1004 1555 1555 2.43 LINK NE2 HIS A 705 CD CD A1002 1555 1555 2.23 LINK SG ACYS A 737 CD CD A1000 1555 1555 2.57 LINK SG BCYS A 737 CD CD A1000 1555 1555 2.57 LINK SG ACYS A 737 CD CD A1002 1555 1555 2.95 LINK SG BCYS A 737 CD CD A1002 1555 1555 2.51 LINK CD CD A1000 O HOH A5805 1555 1555 2.48 LINK CD CD A1001 O HOH A5684 1555 1555 2.43 LINK CD CD A1001 O HOH A5777 1555 1555 2.44 LINK CD CD A1002 O HOH A5419 1555 1555 2.42 LINK CD CD A1003 O HOH A5419 1555 1555 2.43 LINK CD CD A1003 O HOH A5777 1555 1555 2.40 LINK CD CD A1003 O HOH A5794 1555 1555 2.44 LINK CD CD A1004 O HOH A5800 1555 1555 2.38 LINK CD CD A1004 O HOH A5801 1555 1555 2.40 SITE 1 AC1 5 HIS A 652 CYS A 654 GLU A 676 CYS A 737 SITE 2 AC1 5 HOH A5805 SITE 1 AC2 4 CYS A 654 HOH A5501 HOH A5684 HOH A5777 SITE 1 AC3 6 GLU A 676 HIS A 705 CYS A 737 HOH A5419 SITE 2 AC3 6 HOH A5493 HOH A5498 SITE 1 AC4 5 CYS A 654 GLU A 676 HOH A5419 HOH A5777 SITE 2 AC4 5 HOH A5794 SITE 1 AC5 4 HIS A 663 GLU A 691 HOH A5800 HOH A5801 SITE 1 AC6 1 GLU A 426 SITE 1 AC7 7 PHE A 688 ILE A 689 TYR A 693 TYR A 725 SITE 2 AC7 7 GLN A 730 HOH A5616 HOH A5676 SITE 1 AC8 4 ILE A 181 THR A 182 GLU A 220 HOH A5811 SITE 1 AC9 9 ALA A 376 VAL A 377 LYS A 378 ALA A 379 SITE 2 AC9 9 GLU A 380 LEU A 477 LYS A 480 ILE A 481 SITE 3 AC9 9 LYS A 748 SITE 1 AD1 5 ARG A 16 LYS A 19 TRP A 518 ARG A 525 SITE 2 AD1 5 CYS A 526 SITE 1 AD2 8 ASN A 120 PRO A 529 ARG A 570 TRP A 571 SITE 2 AD2 8 SER A 572 PHE A 573 HOH A5010 HOH A5609 CRYST1 78.045 95.198 115.124 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012813 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010504 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008686 0.00000