HEADER TRANSLATION 15-MAY-15 4ZU9 TITLE CRYSTAL STRUCTURE OF BACTERIAL SELENOCYSTEINE-SPECIFIC ELONGATION TITLE 2 FACTOR EF-SEC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR SELB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS VF5; SOURCE 3 ORGANISM_TAXID: 224324; SOURCE 4 STRAIN: VF5; SOURCE 5 GENE: SELB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET25B KEYWDS SMALL GTPASE, EF-TU LIKE, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.ITOH,S.SEKINE,S.YOKOYAMA REVDAT 3 19-FEB-20 4ZU9 1 JRNL REMARK REVDAT 2 28-OCT-15 4ZU9 1 JRNL REVDAT 1 23-SEP-15 4ZU9 0 JRNL AUTH Y.ITOH,S.SEKINE,S.YOKOYAMA JRNL TITL CRYSTAL STRUCTURE OF THE FULL-LENGTH BACTERIAL JRNL TITL 2 SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR SELB JRNL REF NUCLEIC ACIDS RES. V. 43 9028 2015 JRNL REFN ESSN 1362-4962 JRNL PMID 26304550 JRNL DOI 10.1093/NAR/GKV833 REMARK 2 REMARK 2 RESOLUTION. 3.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1702) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.270 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 42954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2179 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.3932 - 8.0201 0.98 2536 117 0.1772 0.2377 REMARK 3 2 8.0201 - 6.3739 1.00 2553 127 0.2204 0.3058 REMARK 3 3 6.3739 - 5.5705 1.00 2558 132 0.2097 0.2365 REMARK 3 4 5.5705 - 5.0623 1.00 2576 120 0.1857 0.2361 REMARK 3 5 5.0623 - 4.7000 1.00 2580 127 0.1574 0.1764 REMARK 3 6 4.7000 - 4.4233 1.00 2520 134 0.1677 0.2082 REMARK 3 7 4.4233 - 4.2020 1.00 2552 134 0.1818 0.2258 REMARK 3 8 4.2020 - 4.0193 1.00 2592 123 0.2035 0.2507 REMARK 3 9 4.0193 - 3.8647 1.00 2546 147 0.2199 0.3385 REMARK 3 10 3.8647 - 3.7314 1.00 2553 149 0.2397 0.2869 REMARK 3 11 3.7314 - 3.6148 1.00 2517 150 0.2514 0.3391 REMARK 3 12 3.6148 - 3.5115 1.00 2556 135 0.2639 0.3161 REMARK 3 13 3.5115 - 3.4191 1.00 2547 167 0.2692 0.3862 REMARK 3 14 3.4191 - 3.3358 1.00 2531 143 0.3018 0.3085 REMARK 3 15 3.3358 - 3.2600 1.00 2523 144 0.3436 0.3131 REMARK 3 16 3.2600 - 3.1906 0.98 2535 130 0.3951 0.4130 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.520 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4783 REMARK 3 ANGLE : 1.390 6423 REMARK 3 CHIRALITY : 0.055 739 REMARK 3 PLANARITY : 0.007 798 REMARK 3 DIHEDRAL : 15.899 1895 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8451 25.8647 28.3779 REMARK 3 T TENSOR REMARK 3 T11: 0.6396 T22: 0.8494 REMARK 3 T33: 0.7340 T12: -0.0204 REMARK 3 T13: 0.0074 T23: -0.2842 REMARK 3 L TENSOR REMARK 3 L11: 5.8714 L22: 2.1771 REMARK 3 L33: 5.6123 L12: 0.6871 REMARK 3 L13: 4.2777 L23: 0.2102 REMARK 3 S TENSOR REMARK 3 S11: -0.2839 S12: 0.7928 S13: -0.1706 REMARK 3 S21: -0.0909 S22: 0.4837 S23: -0.5593 REMARK 3 S31: -0.3780 S32: 0.9061 S33: -0.1864 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 443 ) REMARK 3 ORIGIN FOR THE GROUP (A): -51.2321 53.7331 24.2203 REMARK 3 T TENSOR REMARK 3 T11: 1.8136 T22: 1.2840 REMARK 3 T33: 1.8562 T12: 0.0918 REMARK 3 T13: -0.8220 T23: -0.3644 REMARK 3 L TENSOR REMARK 3 L11: 4.8258 L22: 2.1773 REMARK 3 L33: 1.5667 L12: -3.4271 REMARK 3 L13: 1.8546 L23: -1.1301 REMARK 3 S TENSOR REMARK 3 S11: -0.6809 S12: 0.1608 S13: 1.1770 REMARK 3 S21: 0.6661 S22: -0.2694 S23: -0.3796 REMARK 3 S31: -1.1675 S32: -0.6726 S33: 1.0549 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 444 THROUGH 582 ) REMARK 3 ORIGIN FOR THE GROUP (A): -93.4321 58.5577 5.9116 REMARK 3 T TENSOR REMARK 3 T11: 1.2806 T22: 0.6586 REMARK 3 T33: 0.6976 T12: 0.2171 REMARK 3 T13: 0.2722 T23: 0.0865 REMARK 3 L TENSOR REMARK 3 L11: 5.6729 L22: 5.3397 REMARK 3 L33: 4.9564 L12: -1.2144 REMARK 3 L13: 0.3960 L23: 1.1218 REMARK 3 S TENSOR REMARK 3 S11: -0.3616 S12: -0.5753 S13: -0.1819 REMARK 3 S21: 1.0507 S22: 0.5791 S23: 0.1937 REMARK 3 S31: -0.0575 S32: -0.3432 S33: -0.1454 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE ENTRY CONTAINS FRIEDEL PAIRS IN REMARK 3 F_PLUS/MINUS COLUMNS REMARK 4 REMARK 4 4ZU9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL24XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97895 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42987 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.190 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 15.48 REMARK 200 R MERGE (I) : 0.15800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 15.46 REMARK 200 R MERGE FOR SHELL (I) : 0.02598 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.260 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE ENTRY CONTAINS FRIEDEL PAIRS IN F_PLUS/MINUS COLUMNS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 75.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE-HCL BUFFER, 1.7 REMARK 280 M (NH4)2SO4, 20 MM L-CYSTEINE, 3 MM GMPPNP, 10 MM MG2SO4, PH 5.1, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.31600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 57.12000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 57.12000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 153.47400 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 57.12000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 57.12000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.15800 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 57.12000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.12000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 153.47400 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 57.12000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.12000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.15800 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.31600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 422 OH TYR A 457 2.06 REMARK 500 NE2 GLN A 287 OE2 GLU A 294 2.13 REMARK 500 OE1 GLU A 267 NH1 ARG A 382 2.15 REMARK 500 OE2 GLU A 203 NH2 ARG A 318 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 216 C - N - CA ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 77 -51.09 -28.83 REMARK 500 VAL A 223 107.76 -44.30 REMARK 500 LYS A 255 -166.46 -116.42 REMARK 500 ASN A 314 158.92 -49.14 REMARK 500 LYS A 342 62.74 64.25 REMARK 500 LYS A 407 -15.95 -43.88 REMARK 500 SER A 441 -129.94 61.17 REMARK 500 LEU A 454 86.76 -65.78 REMARK 500 ASN A 461 -123.32 54.44 REMARK 500 ARG A 511 21.92 -70.32 REMARK 500 PHE A 542 77.73 -162.55 REMARK 500 ARG A 573 86.98 -65.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 SER A 40 OG 75.1 REMARK 620 3 GNP A2001 O1G 170.8 114.0 REMARK 620 4 GNP A2001 O2B 69.0 128.5 103.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GNP A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 2002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 2005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYS A 2006 DBREF 4ZU9 A 1 582 UNP O67141 O67141_AQUAE 1 582 SEQRES 1 A 582 MSE LYS TYR ILE LEU PHE ALA THR ALA GLY HIS VAL ASP SEQRES 2 A 582 HIS GLY LYS THR THR LEU ILE LYS THR LEU THR GLY ILE SEQRES 3 A 582 ASP THR ASP ARG LEU PRO GLU GLU LYS LYS ARG GLY LEU SEQRES 4 A 582 SER ILE ASP ILE GLY PHE ALA TYR ILE ASP PHE PRO ASP SEQRES 5 A 582 ILE ASN THR ARG LEU GLU ILE ILE ASP VAL PRO GLY HIS SEQRES 6 A 582 GLU ARG PHE ILE LYS ASN ALA ILE ALA GLY ILE CYS SER SEQRES 7 A 582 ALA SER GLY LEU ILE LEU VAL VAL ASP PRO ASN GLU GLY SEQRES 8 A 582 ILE MSE PRO GLN THR ILE GLU HIS LEU ARG VAL ALA LYS SEQRES 9 A 582 SER PHE GLY ILE LYS HIS GLY ILE ALA VAL LEU THR LYS SEQRES 10 A 582 MSE ASP LYS VAL ASP GLU GLU LEU ALA HIS ILE ALA GLU SEQRES 11 A 582 GLU GLU LEU ILE ALA PHE LEU GLU LYS GLU GLU MSE ASN SEQRES 12 A 582 MSE GLU ILE VAL LYS VAL SER ALA VAL THR GLY GLN GLY SEQRES 13 A 582 ILE GLU ASP LEU LYS ASN SER ILE LYS LYS LEU LEU GLU SEQRES 14 A 582 SER ILE ASN ASN LEU ASN LYS HIS LYS PRO LEU ARG ILE SEQRES 15 A 582 PHE VAL ASP SER ALA PHE VAL VAL LYS GLY TYR GLY THR SEQRES 16 A 582 VAL LEU ARG GLY SER CYS PHE GLU GLY GLU VAL LYS GLU SEQRES 17 A 582 GLY ASP LYS VAL VAL VAL GLU PRO ILE GLY VAL ILE SER SEQRES 18 A 582 ARG VAL ARG LYS MSE GLN ASN HIS GLY VAL PHE VAL LYS SEQRES 19 A 582 LYS ALA VAL ALA GLY GLU ARG ILE ALA LEU ASN LEU PRO SEQRES 20 A 582 GLU VAL ASP ALA LYS LYS VAL LYS ARG GLY PHE LEU ILE SEQRES 21 A 582 LEU LYS PRO GLU SER TYR GLU LYS SER ASN VAL LEU ILE SEQRES 22 A 582 VAL LYS THR GLU ILE ASP LEU LYS PRO GLY LYS ILE TYR SEQRES 23 A 582 GLN VAL PHE PHE GLY MSE ARG GLU THR VAL GLY LYS ILE SEQRES 24 A 582 SER VAL ILE ASP LYS GLY ILE TYR LEU VAL ARG LEU LYS SEQRES 25 A 582 GLU ASN ALA ILE VAL ARG ARG GLY ASP LYS LEU VAL VAL SEQRES 26 A 582 LEU ASP SER SER GLY ASN PHE LEU GLY GLY ALA GLU VAL SEQRES 27 A 582 LEU HIS PRO LYS VAL ARG VAL THR LYS LYS ALA PHE ILE SEQRES 28 A 582 LYS LYS ASN ILE LYS ASP LEU LEU GLU ASN PHE GLU CYS SEQRES 29 A 582 TYR LEU LEU LYS GLU ARG GLY PRO ILE GLY LEU LYS LEU SEQRES 30 A 582 GLU PHE PHE LYS ARG ILE THR GLY VAL SER PRO LYS VAL SEQRES 31 A 582 ALA ASN LEU LYS PRO GLU SER ILE GLU ILE ARG GLY VAL SEQRES 32 A 582 TYR TYR LEU LYS GLY PHE ILE GLU ASN LEU LYS LEU LYS SEQRES 33 A 582 ILE LYS LYS PHE LEU ASP THR GLU LEU GLN ASN ALA PHE SEQRES 34 A 582 GLY VAL ASP LYS GLU LYS VAL LYS SER MSE PHE SER LEU SEQRES 35 A 582 ASN GLU GLU LEU LEU LYS TYR ILE LEU ASP GLU LEU LYS SEQRES 36 A 582 THR TYR LYS ILE VAL ASN GLU LEU ILE ILE ASP GLU ARG SEQRES 37 A 582 LYS SER ASP LEU GLU LYS ASN GLU ASP PHE GLN LYS LEU SEQRES 38 A 582 MSE SER ILE LEU LYS GLY GLY ILE LYS GLU GLU ARG GLU SEQRES 39 A 582 ILE ILE LEU GLU GLY ILE PRO LYS GLU ILE LEU THR LEU SEQRES 40 A 582 SER ILE LYS ARG LYS TYR ALA HIS ARG ILE GLY GLU TYR SEQRES 41 A 582 LEU ILE ILE SER ASP GLU LEU LEU LYS LYS TYR ILE ASN SEQRES 42 A 582 GLU LEU LYS GLU LEU GLY LYS THR PHE ASN VAL GLN GLN SEQRES 43 A 582 ALA LYS ASN LYS LEU GLY LEU THR ARG LYS TYR LEU ILE SEQRES 44 A 582 PRO LEU LEU GLU TYR LEU ASP TYR LEU GLY LEU THR VAL SEQRES 45 A 582 ARG GLU GLY ASN GLU ARG ARG TRP LYS ARG MODRES 4ZU9 MSE A 1 MET MODIFIED RESIDUE MODRES 4ZU9 MSE A 93 MET MODIFIED RESIDUE MODRES 4ZU9 MSE A 118 MET MODIFIED RESIDUE MODRES 4ZU9 MSE A 142 MET MODIFIED RESIDUE MODRES 4ZU9 MSE A 144 MET MODIFIED RESIDUE MODRES 4ZU9 MSE A 226 MET MODIFIED RESIDUE MODRES 4ZU9 MSE A 292 MET MODIFIED RESIDUE MODRES 4ZU9 MSE A 439 MET MODIFIED RESIDUE MODRES 4ZU9 MSE A 482 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 93 8 HET MSE A 118 8 HET MSE A 142 8 HET MSE A 144 8 HET MSE A 226 8 HET MSE A 292 8 HET MSE A 439 8 HET MSE A 482 8 HET GNP A2001 32 HET MG A2002 1 HET SO4 A2003 5 HET SO4 A2004 5 HET SO4 A2005 5 HET CYS A2006 7 HETNAM MSE SELENOMETHIONINE HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM CYS CYSTEINE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 SO4 3(O4 S 2-) FORMUL 7 CYS C3 H7 N O2 S HELIX 1 AA1 GLY A 15 THR A 24 1 10 HELIX 2 AA2 LEU A 31 GLY A 38 1 8 HELIX 3 AA3 HIS A 65 ARG A 67 5 3 HELIX 4 AA4 PHE A 68 SER A 78 1 11 HELIX 5 AA5 MSE A 93 PHE A 106 1 14 HELIX 6 AA6 LYS A 117 VAL A 121 5 5 HELIX 7 AA7 ASP A 122 GLU A 140 1 19 HELIX 8 AA8 GLY A 156 GLU A 169 1 14 HELIX 9 AA9 ASN A 173 LYS A 178 5 6 HELIX 10 AB1 ASP A 250 VAL A 254 5 5 HELIX 11 AB2 LYS A 347 ASN A 354 1 8 HELIX 12 AB3 ASN A 354 ASN A 361 1 8 HELIX 13 AB4 ASN A 361 ARG A 370 1 10 HELIX 14 AB5 LYS A 376 THR A 384 1 9 HELIX 15 AB6 LYS A 389 LYS A 394 1 6 HELIX 16 AB7 LEU A 406 LEU A 425 1 20 HELIX 17 AB8 LYS A 433 SER A 441 1 9 HELIX 18 AB9 ASN A 443 LEU A 454 1 12 HELIX 19 AC1 ASN A 475 LEU A 485 1 11 HELIX 20 AC2 LYS A 486 GLY A 488 5 3 HELIX 21 AC3 GLU A 492 GLU A 498 1 7 HELIX 22 AC4 PRO A 501 ARG A 511 1 11 HELIX 23 AC5 ASP A 525 GLU A 537 1 13 HELIX 24 AC6 ASN A 543 GLY A 552 1 10 HELIX 25 AC7 THR A 554 GLY A 569 1 16 SHEET 1 AA1 6 GLY A 44 PHE A 50 0 SHEET 2 AA1 6 THR A 55 ASP A 61 -1 O LEU A 57 N ILE A 48 SHEET 3 AA1 6 LYS A 2 GLY A 10 1 N ILE A 4 O GLU A 58 SHEET 4 AA1 6 GLY A 81 VAL A 86 1 O ILE A 83 N ALA A 7 SHEET 5 AA1 6 HIS A 110 LEU A 115 1 O VAL A 114 N LEU A 84 SHEET 6 AA1 6 GLU A 145 LYS A 148 1 O VAL A 147 N ALA A 113 SHEET 1 AA2 8 VAL A 219 ARG A 222 0 SHEET 2 AA2 8 LYS A 211 VAL A 214 -1 N VAL A 212 O SER A 221 SHEET 3 AA2 8 LEU A 259 LEU A 261 -1 O LEU A 261 N VAL A 213 SHEET 4 AA2 8 ARG A 181 VAL A 190 -1 N ILE A 182 O ILE A 260 SHEET 5 AA2 8 GLY A 194 GLU A 203 -1 O VAL A 196 N PHE A 188 SHEET 6 AA2 8 ARG A 241 ASN A 245 -1 O LEU A 244 N LEU A 197 SHEET 7 AA2 8 MSE A 226 ASN A 228 -1 N GLN A 227 O ALA A 243 SHEET 8 AA2 8 VAL A 231 PHE A 232 -1 O VAL A 231 N ASN A 228 SHEET 1 AA3 2 GLU A 205 LYS A 207 0 SHEET 2 AA3 2 LYS A 235 VAL A 237 -1 O ALA A 236 N VAL A 206 SHEET 1 AA4 7 VAL A 271 LYS A 275 0 SHEET 2 AA4 7 ILE A 306 LEU A 311 -1 O VAL A 309 N LEU A 272 SHEET 3 AA4 7 ARG A 293 VAL A 301 -1 N SER A 300 O LEU A 308 SHEET 4 AA4 7 TYR A 286 PHE A 290 -1 N VAL A 288 O THR A 295 SHEET 5 AA4 7 LYS A 322 LEU A 326 -1 O VAL A 324 N PHE A 289 SHEET 6 AA4 7 PHE A 332 PRO A 341 -1 O ALA A 336 N LEU A 323 SHEET 7 AA4 7 VAL A 271 LYS A 275 -1 N ILE A 273 O HIS A 340 SHEET 1 AA5 3 VAL A 431 ASP A 432 0 SHEET 2 AA5 3 LEU A 463 ASP A 466 -1 O ILE A 464 N VAL A 431 SHEET 3 AA5 3 TYR A 457 VAL A 460 -1 N VAL A 460 O LEU A 463 SHEET 1 AA6 3 LYS A 490 GLU A 491 0 SHEET 2 AA6 3 LEU A 521 SER A 524 -1 O ILE A 522 N LYS A 490 SHEET 3 AA6 3 ALA A 514 ARG A 516 -1 N HIS A 515 O ILE A 523 SHEET 1 AA7 2 THR A 571 GLU A 574 0 SHEET 2 AA7 2 GLU A 577 TRP A 580 -1 O ARG A 579 N VAL A 572 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK OG1 THR A 17 MG MG A2002 1555 1555 2.23 LINK OG SER A 40 MG MG A2002 1555 1555 2.72 LINK C ILE A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N PRO A 94 1555 1555 1.34 LINK C LYS A 117 N MSE A 118 1555 1555 1.33 LINK C MSE A 118 N ASP A 119 1555 1555 1.33 LINK C GLU A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N ASN A 143 1555 1555 1.32 LINK C ASN A 143 N MSE A 144 1555 1555 1.33 LINK C MSE A 144 N GLU A 145 1555 1555 1.33 LINK C LYS A 225 N MSE A 226 1555 1555 1.32 LINK C MSE A 226 N GLN A 227 1555 1555 1.33 LINK C GLY A 291 N MSE A 292 1555 1555 1.34 LINK C MSE A 292 N ARG A 293 1555 1555 1.33 LINK C SER A 438 N MSE A 439 1555 1555 1.33 LINK C MSE A 439 N PHE A 440 1555 1555 1.33 LINK C LEU A 481 N MSE A 482 1555 1555 1.32 LINK C MSE A 482 N SER A 483 1555 1555 1.33 LINK O1G GNP A2001 MG MG A2002 1555 1555 2.11 LINK O2B GNP A2001 MG MG A2002 1555 1555 2.00 SITE 1 AC1 17 VAL A 12 ASP A 13 GLY A 15 LYS A 16 SITE 2 AC1 17 THR A 17 THR A 18 GLY A 38 SER A 40 SITE 3 AC1 17 GLY A 64 LYS A 117 ASP A 119 LYS A 120 SITE 4 AC1 17 ALA A 151 VAL A 152 ARG A 401 GLU A 445 SITE 5 AC1 17 MG A2002 SITE 1 AC2 3 THR A 17 SER A 40 GNP A2001 SITE 1 AC3 3 VAL A 233 LYS A 234 LYS A 235 SITE 1 AC4 3 LYS A 548 THR A 554 ARG A 555 SITE 1 AC5 3 ARG A 579 LYS A 581 ARG A 582 SITE 1 AC6 5 ARG A 30 ARG A 198 HIS A 229 GLY A 230 SITE 2 AC6 5 ARG A 241 CRYST1 114.240 114.240 204.632 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008754 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004887 0.00000 HETATM 1 N MSE A 1 -43.965 13.962 36.581 1.00113.82 N ANISOU 1 N MSE A 1 13394 15622 14230 -794 -1905 1245 N HETATM 2 CA MSE A 1 -42.749 14.360 37.275 1.00107.74 C ANISOU 2 CA MSE A 1 12699 14764 13475 -588 -1862 1023 C HETATM 3 C MSE A 1 -42.326 15.792 36.935 1.00100.31 C ANISOU 3 C MSE A 1 11773 13932 12407 -247 -1478 581 C HETATM 4 O MSE A 1 -42.875 16.411 36.037 1.00105.46 O ANISOU 4 O MSE A 1 12411 14648 13009 -159 -1276 424 O HETATM 5 CB MSE A 1 -41.609 13.375 36.964 1.00112.03 C ANISOU 5 CB MSE A 1 13422 14694 14449 -583 -2212 870 C HETATM 6 CG MSE A 1 -41.027 13.421 35.560 1.00106.70 C ANISOU 6 CG MSE A 1 12861 13625 14054 -390 -2165 399 C HETATM 7 SE MSE A 1 -39.510 12.195 35.349 1.00146.38 SE ANISOU 7 SE MSE A 1 18045 17978 19594 -288 -2623 122 SE HETATM 8 CE MSE A 1 -40.389 10.548 35.947 1.00151.51 C ANISOU 8 CE MSE A 1 18749 18404 20414 -715 -3230 751 C