HEADER HYDROLASE/HYDROLASE INHIBITOR 17-MAY-15 4ZUR TITLE CRYSTAL STRUCTURE OF ACETYLPOLYAMINE AMIDOHYDROLASE FROM MYCOPLANA TITLE 2 RAMOSA IN COMPLEX WITH A HYDROXAMATE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETYLPOLYAMINE AMINOHYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLANA RAMOSA; SOURCE 3 ORGANISM_TAXID: 40837; SOURCE 4 GENE: APHA, APH; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-21B KEYWDS ACETYLPOLYAMINE AMIDOHYDROLASE, ARGINASE FOLD, ENZYME-INHIBITOR KEYWDS 2 COMPLEX, POLYAMINE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.DECROOS,D.W.CHRISTIANSON REVDAT 6 27-SEP-23 4ZUR 1 LINK REVDAT 5 25-DEC-19 4ZUR 1 REMARK REVDAT 4 13-SEP-17 4ZUR 1 JRNL REMARK REVDAT 3 12-AUG-15 4ZUR 1 JRNL REVDAT 2 05-AUG-15 4ZUR 1 JRNL REVDAT 1 29-JUL-15 4ZUR 0 JRNL AUTH C.DECROOS,D.W.CHRISTIANSON JRNL TITL DESIGN, SYNTHESIS, AND EVALUATION OF POLYAMINE DEACETYLASE JRNL TITL 2 INHIBITORS, AND HIGH-RESOLUTION CRYSTAL STRUCTURES OF THEIR JRNL TITL 3 COMPLEXES WITH ACETYLPOLYAMINE AMIDOHYDROLASE. JRNL REF BIOCHEMISTRY V. 54 4692 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 26200446 JRNL DOI 10.1021/ACS.BIOCHEM.5B00536 REMARK 2 REMARK 2 RESOLUTION. 1.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1833 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 247921 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.115 REMARK 3 R VALUE (WORKING SET) : 0.114 REMARK 3 FREE R VALUE : 0.136 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 12379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.8077 - 3.5132 0.95 7707 404 0.1193 0.1361 REMARK 3 2 3.5132 - 2.7902 1.00 8043 397 0.1169 0.1373 REMARK 3 3 2.7902 - 2.4379 1.00 8007 480 0.1097 0.1311 REMARK 3 4 2.4379 - 2.2152 1.00 8009 421 0.1077 0.1189 REMARK 3 5 2.2152 - 2.0566 1.00 8037 400 0.1098 0.1239 REMARK 3 6 2.0566 - 1.9354 1.00 8037 416 0.1141 0.1347 REMARK 3 7 1.9354 - 1.8385 1.00 8004 421 0.1092 0.1203 REMARK 3 8 1.8385 - 1.7585 1.00 7999 433 0.1002 0.1198 REMARK 3 9 1.7585 - 1.6908 1.00 8016 377 0.0955 0.1138 REMARK 3 10 1.6908 - 1.6325 0.99 7941 443 0.0927 0.1137 REMARK 3 11 1.6325 - 1.5815 0.99 7900 449 0.0928 0.1181 REMARK 3 12 1.5815 - 1.5363 0.99 7841 435 0.0917 0.1218 REMARK 3 13 1.5363 - 1.4958 0.98 7873 411 0.0938 0.1237 REMARK 3 14 1.4958 - 1.4593 0.98 7844 415 0.1010 0.1275 REMARK 3 15 1.4593 - 1.4262 0.98 7907 370 0.1026 0.1280 REMARK 3 16 1.4262 - 1.3958 0.98 7855 424 0.1044 0.1424 REMARK 3 17 1.3958 - 1.3679 0.98 7810 390 0.1089 0.1360 REMARK 3 18 1.3679 - 1.3421 0.98 7820 397 0.1111 0.1467 REMARK 3 19 1.3421 - 1.3181 0.98 7811 415 0.1122 0.1402 REMARK 3 20 1.3181 - 1.2958 0.98 7857 370 0.1158 0.1399 REMARK 3 21 1.2958 - 1.2749 0.97 7718 448 0.1205 0.1430 REMARK 3 22 1.2749 - 1.2553 0.98 7829 416 0.1246 0.1490 REMARK 3 23 1.2553 - 1.2368 0.97 7775 430 0.1273 0.1520 REMARK 3 24 1.2368 - 1.2194 0.97 7725 410 0.1349 0.1668 REMARK 3 25 1.2194 - 1.2029 0.97 7787 392 0.1402 0.1683 REMARK 3 26 1.2029 - 1.1873 0.97 7675 422 0.1454 0.1758 REMARK 3 27 1.1873 - 1.1725 0.97 7726 412 0.1570 0.1940 REMARK 3 28 1.1725 - 1.1583 0.96 7677 397 0.1690 0.1998 REMARK 3 29 1.1583 - 1.1449 0.96 7734 392 0.1824 0.1922 REMARK 3 30 1.1449 - 1.1320 0.95 7578 392 0.1934 0.2253 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.070 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 11.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5690 REMARK 3 ANGLE : 1.434 7774 REMARK 3 CHIRALITY : 0.088 822 REMARK 3 PLANARITY : 0.009 1046 REMARK 3 DIHEDRAL : 12.450 2029 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZUR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 248014 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.130 REMARK 200 RESOLUTION RANGE LOW (A) : 22.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3Q9B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NH4CL, 20% (W/V) PEG 3,350, PH REMARK 280 8.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.35000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 84 CE NZ REMARK 470 LYS A 237 NZ REMARK 470 LYS B 15 CE NZ REMARK 470 LYS B 187 CE NZ REMARK 470 LYS B 267 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 306 O HOH A 507 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 90 -33.18 -130.04 REMARK 500 VAL A 94 -150.79 -94.69 REMARK 500 ALA A 115 110.70 -163.52 REMARK 500 HIS A 227 -25.96 74.39 REMARK 500 HIS A 227 -36.55 76.53 REMARK 500 GLU A 320 -120.89 -121.49 REMARK 500 THR B 90 -31.18 -130.47 REMARK 500 VAL B 94 -148.43 -95.75 REMARK 500 ALA B 115 115.49 -164.22 REMARK 500 ASP B 163 37.68 -140.02 REMARK 500 ASP B 163 36.93 -140.02 REMARK 500 ASP B 163 38.04 -140.02 REMARK 500 HIS B 227 -25.43 74.55 REMARK 500 HIS B 227 -36.50 76.53 REMARK 500 GLU B 320 -122.28 -119.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 154 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1027 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A1028 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A1029 DISTANCE = 6.18 ANGSTROMS REMARK 525 HOH A1030 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH A1031 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH B1017 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1018 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B1019 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B1020 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B1021 DISTANCE = 6.07 ANGSTROMS REMARK 525 HOH B1022 DISTANCE = 6.45 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 193 O REMARK 620 2 ASP A 193 OD1 72.1 REMARK 620 3 ASP A 195 O 103.2 96.8 REMARK 620 4 HIS A 197 O 162.6 90.5 79.9 REMARK 620 5 SER A 216 OG 82.7 107.3 155.8 101.6 REMARK 620 6 LEU A 217 O 78.5 143.8 69.6 118.1 89.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 195 OD1 REMARK 620 2 HIS A 197 ND1 104.5 REMARK 620 3 ASP A 284 OD2 109.2 99.5 REMARK 620 4 7XA A 404 O10 95.4 107.4 137.5 REMARK 620 5 HOH A 512 O 88.4 96.0 152.6 15.5 REMARK 620 6 HOH A 524 O 156.9 94.5 79.9 66.0 76.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 193 O REMARK 620 2 ASP B 193 OD1 72.0 REMARK 620 3 ASP B 195 O 102.9 96.1 REMARK 620 4 HIS B 197 O 162.8 90.8 79.7 REMARK 620 5 SER B 216 OG 82.4 107.4 156.3 102.2 REMARK 620 6 LEU B 217 O 78.3 143.5 70.0 118.1 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 195 OD1 REMARK 620 2 HIS B 197 ND1 104.9 REMARK 620 3 ASP B 284 OD2 110.1 99.8 REMARK 620 4 7XA B 404 O10 96.8 106.2 136.1 REMARK 620 5 HOH B 526 O 94.8 100.4 142.4 6.9 REMARK 620 6 HOH B 527 O 155.5 92.3 83.3 61.2 64.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7XA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NH4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7XA B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZUM RELATED DB: PDB REMARK 900 RELATED ID: 4ZUN RELATED DB: PDB REMARK 900 RELATED ID: 4ZUO RELATED DB: PDB REMARK 900 RELATED ID: 4ZUP RELATED DB: PDB REMARK 900 RELATED ID: 4ZUQ RELATED DB: PDB DBREF 4ZUR A 1 341 UNP Q48935 APHA_MYCRA 1 341 DBREF 4ZUR B 1 341 UNP Q48935 APHA_MYCRA 1 341 SEQRES 1 A 341 MET ARG VAL ILE PHE SER GLU ASP HIS LYS LEU ARG ASN SEQRES 2 A 341 ALA LYS THR GLU LEU TYR GLY GLY GLU LEU VAL PRO PRO SEQRES 3 A 341 PHE GLU ALA PRO PHE ARG ALA GLU TRP ILE LEU ALA ALA SEQRES 4 A 341 VAL LYS GLU ALA GLY PHE ASP ASP VAL VAL ALA PRO ALA SEQRES 5 A 341 ARG HIS GLY LEU GLU THR VAL LEU LYS VAL HIS ASP ALA SEQRES 6 A 341 GLY TYR LEU ASN PHE LEU GLU THR ALA TRP ASP ARG TRP SEQRES 7 A 341 LYS ALA ALA GLY TYR LYS GLY GLU ALA ILE ALA THR SER SEQRES 8 A 341 PHE PRO VAL ARG ARG THR SER PRO ARG ILE PRO THR ASP SEQRES 9 A 341 ILE GLU GLY GLN ILE GLY TYR TYR CYS ASN ALA ALA GLU SEQRES 10 A 341 THR ALA ILE SER PRO GLY THR TRP GLU ALA ALA LEU SER SEQRES 11 A 341 SER MET ALA SER ALA ILE ASP GLY ALA ASP LEU ILE ALA SEQRES 12 A 341 ALA GLY HIS LYS ALA ALA PHE SER LEU CYS ARG PRO PRO SEQRES 13 A 341 GLY HIS HIS ALA GLY ILE ASP MET PHE GLY GLY TYR CYS SEQRES 14 A 341 PHE ILE ASN ASN ALA ALA VAL ALA ALA GLN ARG LEU LEU SEQRES 15 A 341 ASP LYS GLY ALA LYS LYS ILE ALA ILE LEU ASP VAL ASP SEQRES 16 A 341 PHE HIS HIS GLY ASN GLY THR GLN ASP ILE PHE TYR GLU SEQRES 17 A 341 ARG GLY ASP VAL PHE PHE ALA SER LEU HIS GLY ASP PRO SEQRES 18 A 341 ALA GLU ALA PHE PRO HIS PHE LEU GLY TYR ALA GLU GLU SEQRES 19 A 341 THR GLY LYS GLY ALA GLY ALA GLY THR THR ALA ASN TYR SEQRES 20 A 341 PRO MET GLY ARG GLY THR PRO TYR SER VAL TRP GLY GLU SEQRES 21 A 341 ALA LEU THR ASP SER LEU LYS ARG ILE ALA ALA PHE GLY SEQRES 22 A 341 ALA GLU ALA ILE VAL VAL SER LEU GLY VAL ASP THR PHE SEQRES 23 A 341 GLU GLN ASP PRO ILE SER PHE PHE LYS LEU THR SER PRO SEQRES 24 A 341 ASP TYR ILE THR MET GLY ARG THR ILE ALA ALA SER GLY SEQRES 25 A 341 VAL PRO LEU LEU VAL VAL MET GLU GLY GLY TYR GLY VAL SEQRES 26 A 341 PRO GLU ILE GLY LEU ASN VAL ALA ASN VAL LEU LYS GLY SEQRES 27 A 341 VAL ALA GLY SEQRES 1 B 341 MET ARG VAL ILE PHE SER GLU ASP HIS LYS LEU ARG ASN SEQRES 2 B 341 ALA LYS THR GLU LEU TYR GLY GLY GLU LEU VAL PRO PRO SEQRES 3 B 341 PHE GLU ALA PRO PHE ARG ALA GLU TRP ILE LEU ALA ALA SEQRES 4 B 341 VAL LYS GLU ALA GLY PHE ASP ASP VAL VAL ALA PRO ALA SEQRES 5 B 341 ARG HIS GLY LEU GLU THR VAL LEU LYS VAL HIS ASP ALA SEQRES 6 B 341 GLY TYR LEU ASN PHE LEU GLU THR ALA TRP ASP ARG TRP SEQRES 7 B 341 LYS ALA ALA GLY TYR LYS GLY GLU ALA ILE ALA THR SER SEQRES 8 B 341 PHE PRO VAL ARG ARG THR SER PRO ARG ILE PRO THR ASP SEQRES 9 B 341 ILE GLU GLY GLN ILE GLY TYR TYR CYS ASN ALA ALA GLU SEQRES 10 B 341 THR ALA ILE SER PRO GLY THR TRP GLU ALA ALA LEU SER SEQRES 11 B 341 SER MET ALA SER ALA ILE ASP GLY ALA ASP LEU ILE ALA SEQRES 12 B 341 ALA GLY HIS LYS ALA ALA PHE SER LEU CYS ARG PRO PRO SEQRES 13 B 341 GLY HIS HIS ALA GLY ILE ASP MET PHE GLY GLY TYR CYS SEQRES 14 B 341 PHE ILE ASN ASN ALA ALA VAL ALA ALA GLN ARG LEU LEU SEQRES 15 B 341 ASP LYS GLY ALA LYS LYS ILE ALA ILE LEU ASP VAL ASP SEQRES 16 B 341 PHE HIS HIS GLY ASN GLY THR GLN ASP ILE PHE TYR GLU SEQRES 17 B 341 ARG GLY ASP VAL PHE PHE ALA SER LEU HIS GLY ASP PRO SEQRES 18 B 341 ALA GLU ALA PHE PRO HIS PHE LEU GLY TYR ALA GLU GLU SEQRES 19 B 341 THR GLY LYS GLY ALA GLY ALA GLY THR THR ALA ASN TYR SEQRES 20 B 341 PRO MET GLY ARG GLY THR PRO TYR SER VAL TRP GLY GLU SEQRES 21 B 341 ALA LEU THR ASP SER LEU LYS ARG ILE ALA ALA PHE GLY SEQRES 22 B 341 ALA GLU ALA ILE VAL VAL SER LEU GLY VAL ASP THR PHE SEQRES 23 B 341 GLU GLN ASP PRO ILE SER PHE PHE LYS LEU THR SER PRO SEQRES 24 B 341 ASP TYR ILE THR MET GLY ARG THR ILE ALA ALA SER GLY SEQRES 25 B 341 VAL PRO LEU LEU VAL VAL MET GLU GLY GLY TYR GLY VAL SEQRES 26 B 341 PRO GLU ILE GLY LEU ASN VAL ALA ASN VAL LEU LYS GLY SEQRES 27 B 341 VAL ALA GLY HET ZN A 401 1 HET K A 402 1 HET NH4 A 403 1 HET 7XA A 404 27 HET GOL A 405 14 HET ZN B 401 1 HET K B 402 1 HET NH4 B 403 1 HET 7XA B 404 27 HET GOL B 405 14 HET GOL B 406 14 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM NH4 AMMONIUM ION HETNAM 7XA 7-AMINO-N-HYDROXYHEPTANAMIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 K 2(K 1+) FORMUL 5 NH4 2(H4 N 1+) FORMUL 6 7XA 2(C7 H16 N2 O2) FORMUL 7 GOL 3(C3 H8 O3) FORMUL 14 HOH *1053(H2 O) HELIX 1 AA1 SER A 6 ARG A 12 5 7 HELIX 2 AA2 PRO A 30 ALA A 43 1 14 HELIX 3 AA3 THR A 58 VAL A 62 5 5 HELIX 4 AA4 ASP A 64 ALA A 81 1 18 HELIX 5 AA5 ASP A 104 TYR A 112 1 9 HELIX 6 AA6 GLY A 123 ALA A 144 1 22 HELIX 7 AA7 ASN A 172 LYS A 184 1 13 HELIX 8 AA8 GLY A 199 TYR A 207 1 9 HELIX 9 AA9 LYS A 237 ALA A 241 5 5 HELIX 10 AB1 PRO A 254 GLY A 273 1 20 HELIX 11 AB2 THR A 297 ALA A 310 1 14 HELIX 12 AB3 PRO A 326 GLY A 341 1 16 HELIX 13 AB4 SER B 6 ARG B 12 5 7 HELIX 14 AB5 PRO B 30 ALA B 43 1 14 HELIX 15 AB6 THR B 58 VAL B 62 5 5 HELIX 16 AB7 ASP B 64 ALA B 81 1 18 HELIX 17 AB8 ASP B 104 TYR B 112 1 9 HELIX 18 AB9 GLY B 123 ALA B 144 1 22 HELIX 19 AC1 ASN B 172 LYS B 184 1 13 HELIX 20 AC2 GLY B 199 TYR B 207 1 9 HELIX 21 AC3 LYS B 237 ALA B 241 5 5 HELIX 22 AC4 PRO B 254 GLY B 273 1 20 HELIX 23 AC5 THR B 297 ALA B 310 1 14 HELIX 24 AC6 PRO B 326 GLY B 341 1 16 SHEET 1 AA1 8 ASP A 47 VAL A 49 0 SHEET 2 AA1 8 ARG A 2 ILE A 4 1 N VAL A 3 O ASP A 47 SHEET 3 AA1 8 ALA A 148 SER A 151 1 O PHE A 150 N ILE A 4 SHEET 4 AA1 8 LEU A 315 MET A 319 1 O VAL A 317 N SER A 151 SHEET 5 AA1 8 ILE A 277 LEU A 281 1 N VAL A 279 O VAL A 318 SHEET 6 AA1 8 ILE A 189 ASP A 193 1 N ALA A 190 O VAL A 278 SHEET 7 AA1 8 VAL A 212 GLY A 219 1 O ALA A 215 N ASP A 193 SHEET 8 AA1 8 THR A 244 MET A 249 1 O TYR A 247 N SER A 216 SHEET 1 AA2 2 GLU A 17 TYR A 19 0 SHEET 2 AA2 2 GLU A 22 VAL A 24 -1 O GLU A 22 N TYR A 19 SHEET 1 AA3 8 VAL B 48 VAL B 49 0 SHEET 2 AA3 8 VAL B 3 ILE B 4 1 N VAL B 3 O VAL B 49 SHEET 3 AA3 8 ALA B 148 SER B 151 1 O PHE B 150 N ILE B 4 SHEET 4 AA3 8 LEU B 315 MET B 319 1 O VAL B 317 N SER B 151 SHEET 5 AA3 8 ILE B 277 LEU B 281 1 N VAL B 279 O VAL B 318 SHEET 6 AA3 8 ILE B 189 ASP B 193 1 N ALA B 190 O VAL B 278 SHEET 7 AA3 8 VAL B 212 GLY B 219 1 O ALA B 215 N ASP B 193 SHEET 8 AA3 8 THR B 244 MET B 249 1 O TYR B 247 N SER B 216 SHEET 1 AA4 2 GLU B 17 TYR B 19 0 SHEET 2 AA4 2 GLU B 22 VAL B 24 -1 O GLU B 22 N TYR B 19 LINK O ASP A 193 K K A 402 1555 1555 2.84 LINK OD1 ASP A 193 K K A 402 1555 1555 2.69 LINK OD1 ASP A 195 ZN ZN A 401 1555 1555 2.02 LINK O ASP A 195 K K A 402 1555 1555 2.58 LINK ND1 HIS A 197 ZN ZN A 401 1555 1555 2.06 LINK O HIS A 197 K K A 402 1555 1555 2.76 LINK OG SER A 216 K K A 402 1555 1555 2.77 LINK O LEU A 217 K K A 402 1555 1555 2.66 LINK OD2 ASP A 284 ZN ZN A 401 1555 1555 1.97 LINK ZN ZN A 401 O10A7XA A 404 1555 1555 1.92 LINK ZN ZN A 401 O BHOH A 512 1555 1555 2.03 LINK ZN ZN A 401 O BHOH A 524 1555 1555 2.10 LINK O ASP B 193 K K B 402 1555 1555 2.86 LINK OD1 ASP B 193 K K B 402 1555 1555 2.67 LINK OD1 ASP B 195 ZN ZN B 401 1555 1555 2.01 LINK O ASP B 195 K K B 402 1555 1555 2.59 LINK ND1 HIS B 197 ZN ZN B 401 1555 1555 2.06 LINK O HIS B 197 K K B 402 1555 1555 2.75 LINK OG SER B 216 K K B 402 1555 1555 2.80 LINK O LEU B 217 K K B 402 1555 1555 2.67 LINK OD2 ASP B 284 ZN ZN B 401 1555 1555 1.99 LINK ZN ZN B 401 O10A7XA B 404 1555 1555 1.89 LINK ZN ZN B 401 O BHOH B 526 1555 1555 2.08 LINK ZN ZN B 401 O BHOH B 527 1555 1555 2.19 CISPEP 1 ARG A 154 PRO A 155 0 1.73 CISPEP 2 PHE A 225 PRO A 226 0 14.40 CISPEP 3 ARG B 154 PRO B 155 0 1.53 CISPEP 4 PHE B 225 PRO B 226 0 11.57 SITE 1 AC1 6 ASP A 195 HIS A 197 ASP A 284 7XA A 404 SITE 2 AC1 6 HOH A 512 HOH A 524 SITE 1 AC2 5 ASP A 193 ASP A 195 HIS A 197 SER A 216 SITE 2 AC2 5 LEU A 217 SITE 1 AC3 5 PHE A 206 ARG A 209 VAL A 212 THR A 243 SITE 2 AC3 5 HOH A 618 SITE 1 AC4 15 HIS A 158 HIS A 159 GLY A 167 TYR A 168 SITE 2 AC4 15 ASP A 195 HIS A 197 ASP A 284 TYR A 323 SITE 3 AC4 15 ZN A 401 HOH A 512 HOH A 524 HOH A 604 SITE 4 AC4 15 HOH A 766 HOH A 812 GLU B 106 SITE 1 AC5 5 LYS A 15 LYS A 84 GLY A 85 HOH A 546 SITE 2 AC5 5 HOH A 628 SITE 1 AC6 6 ASP B 195 HIS B 197 ASP B 284 7XA B 404 SITE 2 AC6 6 HOH B 526 HOH B 527 SITE 1 AC7 5 ASP B 193 ASP B 195 HIS B 197 SER B 216 SITE 2 AC7 5 LEU B 217 SITE 1 AC8 5 PHE B 206 ARG B 209 VAL B 212 THR B 243 SITE 2 AC8 5 HOH B 607 SITE 1 AC9 14 THR A 90 HIS B 158 HIS B 159 GLY B 167 SITE 2 AC9 14 ASP B 195 HIS B 197 ASP B 284 TYR B 323 SITE 3 AC9 14 ZN B 401 HOH B 526 HOH B 527 HOH B 533 SITE 4 AC9 14 HOH B 575 HOH B 790 SITE 1 AD1 6 LYS B 15 TRP B 75 LYS B 84 GLY B 85 SITE 2 AD1 6 HOH B 520 HOH B 532 SITE 1 AD2 7 HOH A 536 HOH A 556 ARG B 96 THR B 97 SITE 2 AD2 7 HOH B 501 HOH B 807 HOH B 808 CRYST1 44.990 120.700 64.520 90.00 97.04 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022227 0.000000 0.002745 0.00000 SCALE2 0.000000 0.008285 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015617 0.00000