HEADER PROTEIN BINDING 18-MAY-15 4ZV0 TITLE STRUCTURE OF TSE6 IN COMPLEX WITH TSI6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBACTERIAL EFFECTOR SECRETED PROTEIN (TYPE VI SECRETION COMPND 3 SYSTEM); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TSE6-BINDING/TSE6 IMMUNITY PROTEIN; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / SOURCE 3 PAO1 / 1C / PRS 101 / LMG 12228); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 6 GENE: PA0093; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / SOURCE 12 PAO1 / 1C / PRS 101 / LMG 12228); SOURCE 13 ORGANISM_TAXID: 208964; SOURCE 14 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 15 GENE: PA0092; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 PLYSS KEYWDS T6SS EFFECTOR-IMMUNITY PAIR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.C.WHITNEY,S.SAWAI,C.RALSTON,J.D.MOUGOUS REVDAT 5 15-NOV-23 4ZV0 1 ATOM REVDAT 4 11-DEC-19 4ZV0 1 REMARK REVDAT 3 24-APR-19 4ZV0 1 REMARK REVDAT 2 20-SEP-17 4ZV0 1 REMARK REVDAT 1 11-NOV-15 4ZV0 0 JRNL AUTH J.C.WHITNEY,D.QUENTIN,S.SAWAI,M.LEROUX,B.N.HARDING, JRNL AUTH 2 H.E.LEDVINA,B.Q.TRAN,H.ROBINSON,Y.A.GOO,D.R.GOODLETT, JRNL AUTH 3 S.RAUNSER,J.D.MOUGOUS JRNL TITL AN INTERBACTERIAL NAD(P)(+) GLYCOHYDROLASE TOXIN REQUIRES JRNL TITL 2 ELONGATION FACTOR TU FOR DELIVERY TO TARGET CELLS. JRNL REF CELL V. 163 607 2015 JRNL REFN ISSN 1097-4172 JRNL PMID 26456113 JRNL DOI 10.1016/J.CELL.2015.09.027 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 64549 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.164 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.130 REMARK 3 FREE R VALUE TEST SET COUNT : 2022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2741 - 3.3754 1.00 4540 147 0.1486 0.1612 REMARK 3 2 3.3754 - 2.6794 1.00 4480 149 0.1527 0.1572 REMARK 3 3 2.6794 - 2.3408 1.00 4492 146 0.1402 0.1803 REMARK 3 4 2.3408 - 2.1268 1.00 4482 145 0.1336 0.1383 REMARK 3 5 2.1268 - 1.9743 1.00 4446 140 0.1318 0.1367 REMARK 3 6 1.9743 - 1.8579 1.00 4482 144 0.1337 0.1651 REMARK 3 7 1.8579 - 1.7649 1.00 4445 147 0.1400 0.1846 REMARK 3 8 1.7649 - 1.6881 1.00 4470 142 0.1415 0.1635 REMARK 3 9 1.6881 - 1.6231 1.00 4456 143 0.1421 0.1637 REMARK 3 10 1.6231 - 1.5671 1.00 4456 143 0.1538 0.1945 REMARK 3 11 1.5671 - 1.5181 1.00 4439 147 0.1555 0.1651 REMARK 3 12 1.5181 - 1.4747 1.00 4443 146 0.1669 0.1939 REMARK 3 13 1.4747 - 1.4359 1.00 4453 140 0.1807 0.1858 REMARK 3 14 1.4359 - 1.4008 1.00 4443 143 0.1992 0.2245 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 1885 REMARK 3 ANGLE : 1.713 2561 REMARK 3 CHIRALITY : 0.103 279 REMARK 3 PLANARITY : 0.010 339 REMARK 3 DIHEDRAL : 13.567 712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 282 THROUGH 300 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.8959 35.1727 55.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.1315 REMARK 3 T33: 0.1016 T12: 0.0534 REMARK 3 T13: -0.0113 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.3154 L22: 6.2154 REMARK 3 L33: 4.3369 L12: 0.3656 REMARK 3 L13: -0.3269 L23: -3.7412 REMARK 3 S TENSOR REMARK 3 S11: -0.1428 S12: -0.1464 S13: 0.1121 REMARK 3 S21: 0.4426 S22: 0.1960 S23: 0.1567 REMARK 3 S31: -0.2710 S32: -0.1404 S33: -0.0691 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 301 THROUGH 373 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7595 32.6760 37.8521 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.1123 REMARK 3 T33: 0.1062 T12: 0.0508 REMARK 3 T13: 0.0026 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8768 L22: 0.6380 REMARK 3 L33: 1.2083 L12: -0.1657 REMARK 3 L13: 0.3546 L23: -0.7413 REMARK 3 S TENSOR REMARK 3 S11: 0.0359 S12: 0.0908 S13: -0.0258 REMARK 3 S21: -0.0885 S22: -0.0725 S23: -0.0585 REMARK 3 S31: 0.2041 S32: 0.2656 S33: 0.0015 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 374 THROUGH 390 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.8235 34.8066 37.2050 REMARK 3 T TENSOR REMARK 3 T11: 0.0905 T22: 0.2643 REMARK 3 T33: 0.1499 T12: 0.0216 REMARK 3 T13: 0.0121 T23: 0.0437 REMARK 3 L TENSOR REMARK 3 L11: 0.6843 L22: 0.4943 REMARK 3 L33: 2.2004 L12: -0.5602 REMARK 3 L13: -0.1097 L23: -0.1367 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: 0.1766 S13: 0.1130 REMARK 3 S21: -0.0308 S22: -0.1113 S23: -0.1836 REMARK 3 S31: -0.1065 S32: 0.6238 S33: 0.0424 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 391 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3736 23.2013 43.7197 REMARK 3 T TENSOR REMARK 3 T11: 0.3206 T22: 0.2752 REMARK 3 T33: 0.4108 T12: 0.0011 REMARK 3 T13: -0.0182 T23: -0.0201 REMARK 3 L TENSOR REMARK 3 L11: 3.5451 L22: 1.6228 REMARK 3 L33: 0.4979 L12: -2.3055 REMARK 3 L13: -0.9785 L23: 0.6002 REMARK 3 S TENSOR REMARK 3 S11: 0.0572 S12: 0.6758 S13: -1.5591 REMARK 3 S21: 0.1416 S22: -0.1057 S23: 0.7015 REMARK 3 S31: 0.4633 S32: -0.2436 S33: -0.0333 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 427 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2473 36.5947 35.0809 REMARK 3 T TENSOR REMARK 3 T11: 0.0702 T22: 0.1978 REMARK 3 T33: 0.1181 T12: 0.0420 REMARK 3 T13: -0.0014 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 1.2045 L22: 1.8137 REMARK 3 L33: 2.5467 L12: 0.1865 REMARK 3 L13: -1.3285 L23: -1.4026 REMARK 3 S TENSOR REMARK 3 S11: 0.0931 S12: 0.2943 S13: 0.0051 REMARK 3 S21: -0.1965 S22: -0.1672 S23: -0.1910 REMARK 3 S31: 0.1475 S32: 0.2547 S33: 0.0538 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6994 41.9596 38.9628 REMARK 3 T TENSOR REMARK 3 T11: 0.0721 T22: 0.1142 REMARK 3 T33: 0.1315 T12: 0.0103 REMARK 3 T13: -0.0056 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.9910 L22: 1.1396 REMARK 3 L33: 4.6409 L12: -0.1382 REMARK 3 L13: -0.7012 L23: 1.1368 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: 0.0540 S13: 0.1224 REMARK 3 S21: -0.0093 S22: 0.0113 S23: 0.1278 REMARK 3 S31: -0.2085 S32: -0.1921 S33: -0.0206 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2058 32.6354 41.5639 REMARK 3 T TENSOR REMARK 3 T11: 0.0561 T22: 0.0994 REMARK 3 T33: 0.0922 T12: -0.0133 REMARK 3 T13: -0.0115 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.4633 L22: 0.6388 REMARK 3 L33: 6.7592 L12: -0.2162 REMARK 3 L13: -2.9977 L23: 0.3715 REMARK 3 S TENSOR REMARK 3 S11: -0.0526 S12: -0.0018 S13: -0.0626 REMARK 3 S21: 0.0518 S22: 0.0119 S23: 0.0513 REMARK 3 S31: 0.2027 S32: -0.1568 S33: 0.0539 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3135 30.0152 54.8058 REMARK 3 T TENSOR REMARK 3 T11: 0.1777 T22: 0.1833 REMARK 3 T33: 0.1822 T12: 0.0231 REMARK 3 T13: 0.0219 T23: 0.0523 REMARK 3 L TENSOR REMARK 3 L11: 5.3018 L22: 1.9556 REMARK 3 L33: 3.5140 L12: 0.1846 REMARK 3 L13: -2.3147 L23: -1.4391 REMARK 3 S TENSOR REMARK 3 S11: -0.3092 S12: -0.8371 S13: -0.7251 REMARK 3 S21: 0.4371 S22: 0.0282 S23: 0.0895 REMARK 3 S31: 0.2007 S32: 0.5693 S33: 0.1942 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4339 39.3910 43.0303 REMARK 3 T TENSOR REMARK 3 T11: 0.0439 T22: 0.0543 REMARK 3 T33: 0.0736 T12: 0.0165 REMARK 3 T13: -0.0079 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.1349 L22: 0.9224 REMARK 3 L33: 2.4633 L12: 0.0619 REMARK 3 L13: -0.6023 L23: -0.1270 REMARK 3 S TENSOR REMARK 3 S11: 0.0055 S12: -0.0071 S13: 0.0116 REMARK 3 S21: 0.0714 S22: 0.0198 S23: -0.0348 REMARK 3 S31: -0.0065 S32: 0.0555 S33: -0.0224 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8187 44.3756 56.6951 REMARK 3 T TENSOR REMARK 3 T11: 0.2853 T22: 0.1712 REMARK 3 T33: 0.1648 T12: 0.0208 REMARK 3 T13: -0.0117 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 3.9080 L22: 7.2298 REMARK 3 L33: 7.8593 L12: 0.8097 REMARK 3 L13: 0.4827 L23: -6.4621 REMARK 3 S TENSOR REMARK 3 S11: 0.1272 S12: -0.2902 S13: 0.4724 REMARK 3 S21: 0.6620 S22: -0.3095 S23: -0.0656 REMARK 3 S31: -0.7581 S32: 0.2211 S33: 0.1256 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZV0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000209958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69121 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.20 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 3350, 0.2M AMMONIUM REMARK 280 IODIDE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.83867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.91933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 41.87900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.95967 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 69.79833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 268 REMARK 465 GLY A 269 REMARK 465 SER A 270 REMARK 465 SER A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 SER A 278 REMARK 465 GLN A 279 REMARK 465 ASP A 280 REMARK 465 PRO A 281 REMARK 465 VAL A 400 REMARK 465 LYS A 401 REMARK 465 GLY A 402 REMARK 465 GLN A 403 REMARK 465 SER A 404 REMARK 465 TYR A 405 REMARK 465 PRO A 406 REMARK 465 ALA A 407 REMARK 465 LYS A 408 REMARK 465 GLU A 428 REMARK 465 GLY A 429 REMARK 465 SER A 430 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 291 CD OE1 OE2 REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 295 O HOH A 602 1.37 REMARK 500 HH11 ARG B 44 O HOH B 201 1.59 REMARK 500 O PRO A 393 O HOH A 601 1.87 REMARK 500 O HOH A 710 O HOH A 813 1.88 REMARK 500 O HOH B 206 O HOH B 309 1.92 REMARK 500 O HOH B 231 O HOH B 306 1.93 REMARK 500 O HOH A 669 O HOH A 795 1.94 REMARK 500 O HOH A 755 O HOH B 288 1.96 REMARK 500 O HOH B 283 O HOH B 314 1.97 REMARK 500 O HOH A 699 O HOH A 733 2.00 REMARK 500 O HOH B 294 O HOH B 301 2.03 REMARK 500 O HOH B 201 O HOH B 304 2.04 REMARK 500 O HOH A 679 O HOH A 776 2.07 REMARK 500 O HOH B 299 O HOH B 311 2.08 REMARK 500 O HOH A 612 O HOH A 658 2.13 REMARK 500 O HOH B 317 O HOH B 325 2.14 REMARK 500 O HOH B 219 O HOH B 282 2.14 REMARK 500 NH1 ARG B 44 O HOH B 201 2.14 REMARK 500 O HOH B 317 O HOH B 337 2.15 REMARK 500 O HOH B 331 O HOH B 334 2.16 REMARK 500 O HOH A 614 O HOH A 700 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 744 O HOH A 764 4665 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 287 CG ARG A 287 CD 0.191 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 287 CD - NE - CZ ANGL. DEV. = 10.2 DEGREES REMARK 500 ARG A 287 NE - CZ - NH1 ANGL. DEV. = 11.5 DEGREES REMARK 500 ARG A 287 NE - CZ - NH2 ANGL. DEV. = -6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 68 72.01 -151.76 REMARK 500 ASP B 92 55.35 -96.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 825 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH B 341 DISTANCE = 6.19 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 105 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZUY RELATED DB: PDB REMARK 900 RELATED ID: 4ZV4 RELATED DB: PDB DBREF 4ZV0 A 282 430 UNP Q9I739 Q9I739_PSEAE 282 430 DBREF 4ZV0 B 2 94 UNP Q9I740 Q9I740_PSEAE 2 94 SEQADV 4ZV0 MSE A 268 UNP Q9I739 INITIATING METHIONINE SEQADV 4ZV0 GLY A 269 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 SER A 270 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 SER A 271 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 HIS A 272 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 HIS A 273 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 HIS A 274 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 HIS A 275 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 HIS A 276 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 HIS A 277 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 SER A 278 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 GLN A 279 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 ASP A 280 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 PRO A 281 UNP Q9I739 EXPRESSION TAG SEQADV 4ZV0 MSE B 1 UNP Q9I740 INITIATING METHIONINE SEQRES 1 A 163 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 163 PRO HIS ASP ILE ASN TYR ARG GLY ASN ARG GLU THR ALA SEQRES 3 A 163 ALA LYS PHE PHE LYS SER LYS ASP ILE ASP PRO ALA ASP SEQRES 4 A 163 ALA GLU SER TYR MSE ASN GLY LEU ASP PHE ASN HIS PRO SEQRES 5 A 163 VAL ARG VAL GLU THR LEU ALA PRO GLY LYS ASN LEU TRP SEQRES 6 A 163 GLN TYR GLN SER PRO GLY ALA PRO GLN GLY ASN TRP TYR SEQRES 7 A 163 THR LEU SER PRO ARG VAL GLN PRO THR GLU LEU GLY ILE SEQRES 8 A 163 ASN PRO MSE GLY THR ASN ARG ALA ALA ASN THR ILE GLU SEQRES 9 A 163 PRO LYS VAL LEU ASN SER TYR ARG THR THR GLN LYS VAL SEQRES 10 A 163 GLU VAL LEU ARG SER THR ALA ALA PRO THR ASP ASP PHE SEQRES 11 A 163 TRP SER VAL LYS GLY GLN SER TYR PRO ALA LYS GLY GLY SEQRES 12 A 163 ALA GLN GLN LEU PHE SER ASN GLU LYS GLY SER PHE GLY SEQRES 13 A 163 LEU LEU PRO ARG GLU GLY SER SEQRES 1 B 94 MSE THR PRO ILE GLU TYR ILE ASP ARG ALA LEU ALA LEU SEQRES 2 B 94 VAL VAL ASP ARG LEU ALA ARG TYR PRO GLY TYR GLU VAL SEQRES 3 B 94 LEU LEU SER ALA GLU LYS GLN LEU GLN TYR ILE ARG SER SEQRES 4 B 94 VAL LEU LEU ASP ARG SER LEU ASP ARG SER ALA LEU HIS SEQRES 5 B 94 ARG LEU THR LEU GLY SER ILE ALA VAL LYS GLU PHE ASP SEQRES 6 B 94 GLU THR ASP PRO GLU LEU SER ARG ALA LEU LYS ASP ALA SEQRES 7 B 94 TYR TYR VAL GLY ILE ARG THR GLY ARG GLY LEU LYS VAL SEQRES 8 B 94 ASP LEU PRO MODRES 4ZV0 MSE A 311 MET MODIFIED RESIDUE MODRES 4ZV0 MSE A 361 MET MODIFIED RESIDUE HET MSE A 311 9 HET MSE A 361 17 HET MSE B 1 19 HET IOD A 501 1 HET IOD A 502 1 HET IOD A 503 1 HET IOD A 504 1 HET IOD A 505 1 HET IOD B 101 1 HET IOD B 102 1 HET IOD B 103 1 HET IOD B 104 1 HET IOD B 105 1 HETNAM MSE SELENOMETHIONINE HETNAM IOD IODIDE ION FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 3 IOD 10(I 1-) FORMUL 13 HOH *366(H2 O) HELIX 1 AA1 ASP A 283 LYS A 300 1 18 HELIX 2 AA2 ASP A 303 GLY A 313 1 11 HELIX 3 AA3 PRO A 353 GLY A 357 5 5 HELIX 4 AA4 GLU A 418 GLY A 420 5 3 HELIX 5 AA5 THR B 2 TYR B 21 1 20 HELIX 6 AA6 TYR B 24 ASP B 43 1 20 HELIX 7 AA7 ARG B 48 LEU B 54 5 7 HELIX 8 AA8 THR B 55 PHE B 64 1 10 HELIX 9 AA9 ASP B 68 ARG B 87 1 20 SHEET 1 AA1 4 ARG A 321 LEU A 325 0 SHEET 2 AA1 4 VAL A 384 THR A 390 -1 O ARG A 388 N ARG A 321 SHEET 3 AA1 4 GLN A 412 PHE A 415 -1 O GLN A 413 N SER A 389 SHEET 4 AA1 4 TRP A 344 TYR A 345 -1 N TYR A 345 O LEU A 414 SHEET 1 AA2 3 ASN A 330 GLN A 335 0 SHEET 2 AA2 3 VAL A 374 THR A 380 -1 O VAL A 374 N GLN A 335 SHEET 3 AA2 3 PHE A 422 LEU A 424 -1 O GLY A 423 N ARG A 379 SHEET 1 AA3 2 MSE A 361 ASN A 364 0 SHEET 2 AA3 2 THR A 369 PRO A 372 -1 O GLU A 371 N GLY A 362 LINK C TYR A 310 N MSE A 311 1555 1555 1.31 LINK C MSE A 311 N ASN A 312 1555 1555 1.32 LINK C PRO A 360 N MSE A 361 1555 1555 1.33 LINK C MSE A 361 N GLY A 362 1555 1555 1.34 LINK C MSE B 1 N THR B 2 1555 1555 1.33 SITE 1 AC1 2 ASN A 289 GLN B 35 SITE 1 AC2 1 HOH A 820 SITE 1 AC3 2 GLN A 412 HOH B 276 SITE 1 AC4 1 ARG B 20 SITE 1 AC5 3 GLY A 410 HOH A 776 HOH B 271 SITE 1 AC6 3 HOH A 655 GLU B 25 HOH B 320 SITE 1 AC7 2 LYS B 76 HOH B 247 CRYST1 83.209 83.209 83.758 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012018 0.006939 0.000000 0.00000 SCALE2 0.000000 0.013877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011939 0.00000