HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-MAY-15 4ZY6 TITLE CRYSTAL STRUCTURE OF P21-ACTIVATED KINASE 1 IN COMPLEX WITH AN TITLE 2 INHIBITOR COMPOUND 29 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN RESIDUE 249-545; COMPND 5 SYNONYM: ALPHA-PAK,P21-ACTIVATED KINASE 1,PAK-1,P65-PAK; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PAK1, KINASE, INHIBITOR, COMPLEX, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.ROUGE,W.WANG REVDAT 3 16-DEC-15 4ZY6 1 REMARK REVDAT 2 15-JUL-15 4ZY6 1 JRNL REVDAT 1 01-JUL-15 4ZY6 0 JRNL AUTH J.J.CRAWFORD,W.LEE,I.ALIAGAS,S.MATHIEU,K.P.HOEFLICH,W.ZHOU, JRNL AUTH 2 W.WANG,L.ROUGE,L.MURRAY,H.LA,N.LIU,P.W.FAN,J.CHEONG, JRNL AUTH 3 C.E.HEISE,S.RAMASWAMY,R.MINTZER,Y.LIU,Q.CHAO,J.RUDOLPH JRNL TITL STRUCTURE-GUIDED DESIGN OF GROUP I SELECTIVE P21-ACTIVATED JRNL TITL 2 KINASE INHIBITORS. JRNL REF J.MED.CHEM. V. 58 5121 2015 JRNL REFN ISSN 0022-2623 JRNL PMID 26030457 JRNL DOI 10.1021/ACS.JMEDCHEM.5B00572 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 34882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 17 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.22 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.25 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2872 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2097 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2740 REMARK 3 BIN R VALUE (WORKING SET) : 0.2091 REMARK 3 BIN FREE R VALUE : 0.2235 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 132 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4393 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 244 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.77650 REMARK 3 B22 (A**2) : 0.94200 REMARK 3 B33 (A**2) : 2.83450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.92330 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.304 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.217 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.187 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.217 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.188 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.918 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4543 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6147 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1615 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 119 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 635 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4543 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 601 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5387 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.15 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.07 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.61 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|251 - A|346 } REMARK 3 ORIGIN FOR THE GROUP (A): 21.9639 -22.4319 8.1560 REMARK 3 T TENSOR REMARK 3 T11: 0.4411 T22: 0.4715 REMARK 3 T33: 0.5509 T12: -0.0850 REMARK 3 T13: 0.1597 T23: -0.3483 REMARK 3 L TENSOR REMARK 3 L11: 3.1212 L22: 4.5682 REMARK 3 L33: 2.9804 L12: 0.3322 REMARK 3 L13: -0.7267 L23: 0.9007 REMARK 3 S TENSOR REMARK 3 S11: -0.5402 S12: 0.6484 S13: -1.0768 REMARK 3 S21: -0.5700 S22: 0.4724 S23: -0.1325 REMARK 3 S31: 0.4618 S32: 0.0122 S33: 0.0678 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|347 - A|541 A|601 } REMARK 3 ORIGIN FOR THE GROUP (A): 24.4332 -0.4336 21.3443 REMARK 3 T TENSOR REMARK 3 T11: 0.2830 T22: 0.2803 REMARK 3 T33: 0.1203 T12: -0.0272 REMARK 3 T13: 0.0337 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 2.6474 L22: 2.1360 REMARK 3 L33: 3.9426 L12: 0.2790 REMARK 3 L13: 0.2072 L23: 1.1849 REMARK 3 S TENSOR REMARK 3 S11: -0.1765 S12: 0.2332 S13: -0.1111 REMARK 3 S21: -0.0598 S22: 0.2676 S23: -0.1988 REMARK 3 S31: -0.4500 S32: 0.6922 S33: -0.0912 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { B|255 - B|346 } REMARK 3 ORIGIN FOR THE GROUP (A): -2.3394 -15.9257 -15.1850 REMARK 3 T TENSOR REMARK 3 T11: 0.4944 T22: 0.1940 REMARK 3 T33: 0.3408 T12: -0.0790 REMARK 3 T13: 0.2262 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 1.7010 L22: 5.7496 REMARK 3 L33: 2.1005 L12: -0.0176 REMARK 3 L13: 0.3032 L23: 0.5657 REMARK 3 S TENSOR REMARK 3 S11: -0.0918 S12: -0.1830 S13: -0.1159 REMARK 3 S21: 0.9003 S22: -0.1789 S23: 0.5465 REMARK 3 S31: 0.4096 S32: -0.3181 S33: 0.2708 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { B|347 - B|541 B|601 } REMARK 3 ORIGIN FOR THE GROUP (A): 15.2181 4.8350 -16.8792 REMARK 3 T TENSOR REMARK 3 T11: 0.2962 T22: 0.1801 REMARK 3 T33: 0.2029 T12: 0.0018 REMARK 3 T13: 0.0658 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.9619 L22: 0.9186 REMARK 3 L33: 2.8335 L12: 0.3977 REMARK 3 L13: -1.0762 L23: -0.4124 REMARK 3 S TENSOR REMARK 3 S11: 0.0667 S12: -0.3235 S13: 0.1812 REMARK 3 S21: 0.1539 S22: -0.0473 S23: 0.1052 REMARK 3 S31: -0.1651 S32: 0.2331 S33: -0.0194 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ZY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-MAY-15. REMARK 100 THE DEPOSITION ID IS D_1000210103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97740 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3500, 0.2M AMMONIUM SULFATE REMARK 280 AND 0.1M TRIS PH 8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.12050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 248 REMARK 465 SER A 249 REMARK 465 ASP A 250 REMARK 465 MET A 301 REMARK 465 ASN A 302 REMARK 465 LEU A 303 REMARK 465 GLN A 304 REMARK 465 GLN A 305 REMARK 465 GLN A 306 REMARK 465 GLY A 337 REMARK 465 ASP A 338 REMARK 465 ASN A 543 REMARK 465 ASN A 544 REMARK 465 HIS A 545 REMARK 465 GLY A 546 REMARK 465 ASN A 547 REMARK 465 SER A 548 REMARK 465 GLY B 248 REMARK 465 SER B 249 REMARK 465 ASP B 250 REMARK 465 GLU B 251 REMARK 465 GLU B 252 REMARK 465 ILE B 253 REMARK 465 LEU B 254 REMARK 465 CYS B 411 REMARK 465 ALA B 412 REMARK 465 GLN B 413 REMARK 465 ILE B 414 REMARK 465 THR B 415 REMARK 465 PRO B 416 REMARK 465 GLU B 417 REMARK 465 GLN B 418 REMARK 465 ASN B 543 REMARK 465 ASN B 544 REMARK 465 HIS B 545 REMARK 465 GLY B 546 REMARK 465 ASN B 547 REMARK 465 SER B 548 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 278 CG CD OE1 NE2 REMARK 470 SER A 281 OG REMARK 470 ARG B 258 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 304 CG CD OE1 NE2 REMARK 470 LYS B 309 CG CD CE NZ REMARK 470 ASP B 338 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 261 10.28 -148.75 REMARK 500 SER A 262 -159.02 -156.09 REMARK 500 SER A 281 -60.98 -135.99 REMARK 500 VAL A 328 93.47 -67.85 REMARK 500 LEU A 335 -107.98 8.20 REMARK 500 ARG A 388 -0.04 70.16 REMARK 500 ASP A 407 82.28 68.32 REMARK 500 ALA B 280 -118.51 55.90 REMARK 500 ASN B 322 79.93 -114.90 REMARK 500 ASP B 338 -4.72 71.52 REMARK 500 ARG B 388 -18.59 79.77 REMARK 500 TYR B 464 -19.13 74.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4T6 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4T6 B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4ZY4 RELATED DB: PDB REMARK 900 RELATED ID: 4ZY5 RELATED DB: PDB DBREF 4ZY6 A 249 545 UNP Q13153 PAK1_HUMAN 249 545 DBREF 4ZY6 B 249 545 UNP Q13153 PAK1_HUMAN 249 545 SEQADV 4ZY6 GLY A 248 UNP Q13153 EXPRESSION TAG SEQADV 4ZY6 ASN A 389 UNP Q13153 ASP 389 ENGINEERED MUTATION SEQADV 4ZY6 GLY A 546 UNP Q13153 EXPRESSION TAG SEQADV 4ZY6 ASN A 547 UNP Q13153 EXPRESSION TAG SEQADV 4ZY6 SER A 548 UNP Q13153 EXPRESSION TAG SEQADV 4ZY6 GLY B 248 UNP Q13153 EXPRESSION TAG SEQADV 4ZY6 ASN B 389 UNP Q13153 ASP 389 ENGINEERED MUTATION SEQADV 4ZY6 GLY B 546 UNP Q13153 EXPRESSION TAG SEQADV 4ZY6 ASN B 547 UNP Q13153 EXPRESSION TAG SEQADV 4ZY6 SER B 548 UNP Q13153 EXPRESSION TAG SEQRES 1 A 301 GLY SER ASP GLU GLU ILE LEU GLU LYS LEU ARG SER ILE SEQRES 2 A 301 VAL SER VAL GLY ASP PRO LYS LYS LYS TYR THR ARG PHE SEQRES 3 A 301 GLU LYS ILE GLY GLN GLY ALA SER GLY THR VAL TYR THR SEQRES 4 A 301 ALA MET ASP VAL ALA THR GLY GLN GLU VAL ALA ILE LYS SEQRES 5 A 301 GLN MET ASN LEU GLN GLN GLN PRO LYS LYS GLU LEU ILE SEQRES 6 A 301 ILE ASN GLU ILE LEU VAL MET ARG GLU ASN LYS ASN PRO SEQRES 7 A 301 ASN ILE VAL ASN TYR LEU ASP SER TYR LEU VAL GLY ASP SEQRES 8 A 301 GLU LEU TRP VAL VAL MET GLU TYR LEU ALA GLY GLY SER SEQRES 9 A 301 LEU THR ASP VAL VAL THR GLU THR CYS MET ASP GLU GLY SEQRES 10 A 301 GLN ILE ALA ALA VAL CYS ARG GLU CYS LEU GLN ALA LEU SEQRES 11 A 301 GLU PHE LEU HIS SER ASN GLN VAL ILE HIS ARG ASN ILE SEQRES 12 A 301 LYS SER ASP ASN ILE LEU LEU GLY MET ASP GLY SER VAL SEQRES 13 A 301 LYS LEU THR ASP PHE GLY PHE CYS ALA GLN ILE THR PRO SEQRES 14 A 301 GLU GLN SER LYS ARG SER THR MET VAL GLY THR PRO TYR SEQRES 15 A 301 TRP MET ALA PRO GLU VAL VAL THR ARG LYS ALA TYR GLY SEQRES 16 A 301 PRO LYS VAL ASP ILE TRP SER LEU GLY ILE MET ALA ILE SEQRES 17 A 301 GLU MET ILE GLU GLY GLU PRO PRO TYR LEU ASN GLU ASN SEQRES 18 A 301 PRO LEU ARG ALA LEU TYR LEU ILE ALA THR ASN GLY THR SEQRES 19 A 301 PRO GLU LEU GLN ASN PRO GLU LYS LEU SER ALA ILE PHE SEQRES 20 A 301 ARG ASP PHE LEU ASN ARG CYS LEU GLU MET ASP VAL GLU SEQRES 21 A 301 LYS ARG GLY SER ALA LYS GLU LEU LEU GLN HIS GLN PHE SEQRES 22 A 301 LEU LYS ILE ALA LYS PRO LEU SER SER LEU THR PRO LEU SEQRES 23 A 301 ILE ALA ALA ALA LYS GLU ALA THR LYS ASN ASN HIS GLY SEQRES 24 A 301 ASN SER SEQRES 1 B 301 GLY SER ASP GLU GLU ILE LEU GLU LYS LEU ARG SER ILE SEQRES 2 B 301 VAL SER VAL GLY ASP PRO LYS LYS LYS TYR THR ARG PHE SEQRES 3 B 301 GLU LYS ILE GLY GLN GLY ALA SER GLY THR VAL TYR THR SEQRES 4 B 301 ALA MET ASP VAL ALA THR GLY GLN GLU VAL ALA ILE LYS SEQRES 5 B 301 GLN MET ASN LEU GLN GLN GLN PRO LYS LYS GLU LEU ILE SEQRES 6 B 301 ILE ASN GLU ILE LEU VAL MET ARG GLU ASN LYS ASN PRO SEQRES 7 B 301 ASN ILE VAL ASN TYR LEU ASP SER TYR LEU VAL GLY ASP SEQRES 8 B 301 GLU LEU TRP VAL VAL MET GLU TYR LEU ALA GLY GLY SER SEQRES 9 B 301 LEU THR ASP VAL VAL THR GLU THR CYS MET ASP GLU GLY SEQRES 10 B 301 GLN ILE ALA ALA VAL CYS ARG GLU CYS LEU GLN ALA LEU SEQRES 11 B 301 GLU PHE LEU HIS SER ASN GLN VAL ILE HIS ARG ASN ILE SEQRES 12 B 301 LYS SER ASP ASN ILE LEU LEU GLY MET ASP GLY SER VAL SEQRES 13 B 301 LYS LEU THR ASP PHE GLY PHE CYS ALA GLN ILE THR PRO SEQRES 14 B 301 GLU GLN SER LYS ARG SER THR MET VAL GLY THR PRO TYR SEQRES 15 B 301 TRP MET ALA PRO GLU VAL VAL THR ARG LYS ALA TYR GLY SEQRES 16 B 301 PRO LYS VAL ASP ILE TRP SER LEU GLY ILE MET ALA ILE SEQRES 17 B 301 GLU MET ILE GLU GLY GLU PRO PRO TYR LEU ASN GLU ASN SEQRES 18 B 301 PRO LEU ARG ALA LEU TYR LEU ILE ALA THR ASN GLY THR SEQRES 19 B 301 PRO GLU LEU GLN ASN PRO GLU LYS LEU SER ALA ILE PHE SEQRES 20 B 301 ARG ASP PHE LEU ASN ARG CYS LEU GLU MET ASP VAL GLU SEQRES 21 B 301 LYS ARG GLY SER ALA LYS GLU LEU LEU GLN HIS GLN PHE SEQRES 22 B 301 LEU LYS ILE ALA LYS PRO LEU SER SER LEU THR PRO LEU SEQRES 23 B 301 ILE ALA ALA ALA LYS GLU ALA THR LYS ASN ASN HIS GLY SEQRES 24 B 301 ASN SER HET 4T6 A 601 27 HET SO4 A 602 5 HET 4T6 B 601 27 HETNAM 4T6 N~2~-[(7-CHLORO-1H-BENZIMIDAZOL-6-YL)METHYL]-N~4~-(5- HETNAM 2 4T6 CYCLOPROPYL-1H-PYRAZOL-3-YL)PYRIMIDINE-2,4-DIAMINE HETNAM SO4 SULFATE ION FORMUL 3 4T6 2(C18 H17 CL N8) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *244(H2 O) HELIX 1 AA1 GLU A 252 ILE A 260 1 9 HELIX 2 AA2 ASP A 265 LYS A 269 1 5 HELIX 3 AA3 LYS A 309 ASN A 322 1 14 HELIX 4 AA4 LEU A 352 THR A 359 1 8 HELIX 5 AA5 ASP A 362 ASN A 383 1 22 HELIX 6 AA6 LYS A 391 ASP A 393 5 3 HELIX 7 AA7 THR A 415 SER A 419 5 5 HELIX 8 AA8 THR A 427 MET A 431 5 5 HELIX 9 AA9 ALA A 432 THR A 437 1 6 HELIX 10 AB1 LYS A 444 GLY A 460 1 17 HELIX 11 AB2 ASN A 468 GLY A 480 1 13 HELIX 12 AB3 ASN A 486 LEU A 490 5 5 HELIX 13 AB4 SER A 491 LEU A 502 1 12 HELIX 14 AB5 SER A 511 LEU A 516 1 6 HELIX 15 AB6 GLN A 517 ALA A 524 5 8 HELIX 16 AB7 PRO A 526 SER A 529 5 4 HELIX 17 AB8 LEU A 530 LYS A 542 1 13 HELIX 18 AB9 LYS B 256 VAL B 261 1 6 HELIX 19 AC1 ASP B 265 LYS B 269 1 5 HELIX 20 AC2 GLN B 304 GLN B 306 5 3 HELIX 21 AC3 LYS B 308 ASN B 322 1 15 HELIX 22 AC4 SER B 351 THR B 359 1 9 HELIX 23 AC5 ASP B 362 ASN B 383 1 22 HELIX 24 AC6 LYS B 391 ASP B 393 5 3 HELIX 25 AC7 ALA B 432 THR B 437 1 6 HELIX 26 AC8 PRO B 443 GLY B 460 1 18 HELIX 27 AC9 ASN B 468 ASN B 479 1 12 HELIX 28 AD1 SER B 491 LEU B 502 1 12 HELIX 29 AD2 SER B 511 LEU B 516 1 6 HELIX 30 AD3 GLN B 517 ALA B 524 5 8 HELIX 31 AD4 PRO B 526 SER B 529 5 4 HELIX 32 AD5 LEU B 530 THR B 541 1 12 SHEET 1 AA1 5 TYR A 270 LYS A 275 0 SHEET 2 AA1 5 VAL A 284 ASP A 289 -1 O MET A 288 N THR A 271 SHEET 3 AA1 5 GLU A 295 LYS A 299 -1 O ILE A 298 N TYR A 285 SHEET 4 AA1 5 TRP A 341 GLU A 345 -1 O MET A 344 N ALA A 297 SHEET 5 AA1 5 TYR A 330 TYR A 334 -1 N LEU A 331 O VAL A 343 SHEET 1 AA2 3 GLY A 350 SER A 351 0 SHEET 2 AA2 3 ILE A 395 LEU A 397 -1 O LEU A 397 N GLY A 350 SHEET 3 AA2 3 VAL A 403 LEU A 405 -1 O LYS A 404 N LEU A 396 SHEET 1 AA3 2 VAL A 385 ILE A 386 0 SHEET 2 AA3 2 ALA A 412 GLN A 413 -1 O ALA A 412 N ILE A 386 SHEET 1 AA4 5 TYR B 270 GLY B 277 0 SHEET 2 AA4 5 THR B 283 ASP B 289 -1 O VAL B 284 N ILE B 276 SHEET 3 AA4 5 GLU B 295 ASN B 302 -1 O ILE B 298 N TYR B 285 SHEET 4 AA4 5 GLU B 339 GLU B 345 -1 O LEU B 340 N MET B 301 SHEET 5 AA4 5 TYR B 330 VAL B 336 -1 N LEU B 331 O VAL B 343 SHEET 1 AA5 2 ILE B 395 LEU B 397 0 SHEET 2 AA5 2 VAL B 403 LEU B 405 -1 O LYS B 404 N LEU B 396 SSBOND 1 CYS A 360 CYS B 360 1555 1556 2.59 CISPEP 1 SER A 262 VAL A 263 0 3.70 CISPEP 2 SER A 281 GLY A 282 0 -6.78 CISPEP 3 GLY A 282 THR A 283 0 -3.10 CISPEP 4 GLN B 306 PRO B 307 0 -0.95 CISPEP 5 PHE B 408 GLY B 409 0 -6.14 CISPEP 6 GLY B 409 PHE B 410 0 -8.81 SITE 1 AC1 10 VAL A 284 ALA A 297 LYS A 299 GLU A 345 SITE 2 AC1 10 TYR A 346 LEU A 347 ASP A 393 ASN A 394 SITE 3 AC1 10 LEU A 396 THR A 406 SITE 1 AC2 3 ARG A 388 ARG A 421 THR A 423 SITE 1 AC3 9 ILE B 276 ALA B 297 GLU B 345 TYR B 346 SITE 2 AC3 9 LEU B 347 ASP B 393 ASN B 394 LEU B 396 SITE 3 AC3 9 THR B 406 CRYST1 62.634 82.241 66.137 90.00 106.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015966 0.000000 0.004611 0.00000 SCALE2 0.000000 0.012159 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015738 0.00000