data_4ZYM # _entry.id 4ZYM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ZYM pdb_00004zym 10.2210/pdb4zym/pdb WWPDB D_1000210110 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4ZYM _pdbx_database_status.recvd_initial_deposition_date 2015-05-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tripathi, S.K.' 1 'Paukstelis, P.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chembiochem _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1439-7633 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 17 _citation.language ? _citation.page_first 1177 _citation.page_last 1183 _citation.title 'Structural Implications of Homopyrimidine Base Pairs in the Parallel-Stranded d(YGA) Motif.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/cbic.201500491 _citation.pdbx_database_id_PubMed 26629965 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tripathi, S.' 1 ? primary 'Paukstelis, P.J.' 2 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 112.470 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 4ZYM _cell.details ? _cell.formula_units_Z ? _cell.length_a 59.954 _cell.length_a_esd ? _cell.length_b 29.354 _cell.length_b_esd ? _cell.length_c 74.731 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ZYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*CP*TP*CP*GP*GP*AP*CP*GP*AP*T)-3') ; 3358.211 4 ? ? ? 'DNA oligonucleotide demonstrating parallel stranded DNA homoduplex.' 2 non-polymer syn 'MAGNESIUM ION' 24.305 4 ? ? ? ? 3 water nat water 18.015 6 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DC)(DT)(DC)(DG)(DG)(DA)(DC)(DG)(DA)(DT)' _entity_poly.pdbx_seq_one_letter_code_can ACTCGGACGAT _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DT n 1 4 DC n 1 5 DG n 1 6 DG n 1 7 DA n 1 8 DC n 1 9 DG n 1 10 DA n 1 11 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 11 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4ZYM _struct_ref.pdbx_db_accession 4ZYM _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ZYM A 1 ? 11 ? 4ZYM 1 ? 11 ? 1 11 2 1 4ZYM B 1 ? 11 ? 4ZYM 1 ? 11 ? 1 11 3 1 4ZYM C 1 ? 11 ? 4ZYM 1 ? 11 ? 1 11 4 1 4ZYM D 1 ? 11 ? 4ZYM 1 ? 11 ? 1 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4ZYM _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.26 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.62 _exptl_crystal.description 'Crystals diffracted to 2.5 Angstrom' _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 300 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '100 mM Magnesium chloride, 5 % PEG400, 30 mM Sodium Cacodilate, 8 mM Cobalt hexamine.' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-11-01 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Si(220)' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-E' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-E _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 45.3 _reflns.entry_id 4ZYM _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.5 _reflns.d_resolution_low 69.057 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all 11965 _reflns.number_obs 4342 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.73 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 2.8 _reflns.pdbx_Rmerge_I_obs 0.103 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.145 _reflns.pdbx_netI_over_av_sigmaI 6.4 _reflns.pdbx_netI_over_sigmaI 4.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.62 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 95 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.286 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 100.030 _refine.B_iso_mean 35.2971 _refine.B_iso_min 13.710 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4ZYM _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.5300 _refine.ls_d_res_low 69.0570 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4106 _refine.ls_number_reflns_R_free 187 _refine.ls_number_reflns_R_work 3919 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.2800 _refine.ls_percent_reflns_R_free 4.5500 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2305 _refine.ls_R_factor_R_free 0.243 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2297 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.380 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4RIM _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details Random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.6900 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2600 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.5300 _refine_hist.d_res_low 69.0570 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 6 _refine_hist.number_atoms_total 836 _refine_hist.pdbx_number_residues_total 44 _refine_hist.pdbx_B_iso_mean_ligand 51.33 _refine_hist.pdbx_B_iso_mean_solvent 38.92 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 826 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.007 ? 970 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.725 ? 1493 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.033 ? 167 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 41 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 34.495 ? 422 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.5300 _refine_ls_shell.d_res_low 2.768 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 187 _refine_ls_shell.number_reflns_R_work 911 _refine_ls_shell.percent_reflns_obs 98.48 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.35 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 4ZYM _struct.title 'Structural implications of homo-pyrimidine base pairs on the parallel-stranded d(GAY) motif.' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4ZYM _struct_keywords.text 'Tetraplex, homo-base pair, pyrimidine substitution., DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 3 ? J N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C DC 4 OP2 ? ? ? 1_555 G MG . MG ? ? C DC 4 C MG 101 1_555 ? ? ? ? ? ? ? 2.572 ? ? metalc2 metalc ? ? C DA 7 OP1 ? ? ? 1_555 H MG . MG ? ? C DA 7 C MG 102 1_555 ? ? ? ? ? ? ? 2.409 ? ? hydrog1 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DA 1 N7 ? ? A DA 1 B DA 1 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog2 hydrog ? ? A DA 1 N7 ? ? ? 1_555 B DA 1 N6 ? ? A DA 1 B DA 1 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog3 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DC 4 O2 ? ? A DC 4 B DC 4 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog4 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DC 4 N4 ? ? A DC 4 B DC 4 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog5 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DG 5 N3 ? ? A DG 5 B DG 5 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog6 hydrog ? ? A DG 5 N3 ? ? ? 1_555 B DG 5 N2 ? ? A DG 5 B DG 5 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog7 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DG 6 N3 ? ? A DG 6 B DG 6 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog8 hydrog ? ? A DG 6 N3 ? ? ? 1_555 B DG 6 N2 ? ? A DG 6 B DG 6 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog9 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DA 7 N7 ? ? A DA 7 B DA 7 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog10 hydrog ? ? A DA 7 N7 ? ? ? 1_555 B DA 7 N6 ? ? A DA 7 B DA 7 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog11 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DC 8 O2 ? ? A DC 8 B DC 8 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog12 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DC 8 N4 ? ? A DC 8 B DC 8 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog13 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DG 9 N3 ? ? A DG 9 B DG 9 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog14 hydrog ? ? A DG 9 N3 ? ? ? 1_555 B DG 9 N2 ? ? A DG 9 B DG 9 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog15 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DA 10 N7 ? ? A DA 10 B DA 10 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog16 hydrog ? ? A DA 10 N7 ? ? ? 1_555 B DA 10 N6 ? ? A DA 10 B DA 10 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog17 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DA 1 N7 ? ? C DA 1 D DA 1 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog18 hydrog ? ? C DA 1 N7 ? ? ? 1_555 D DA 1 N6 ? ? C DA 1 D DA 1 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog19 hydrog ? ? C DC 4 N4 ? ? ? 1_555 D DC 4 O2 ? ? C DC 4 D DC 4 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog20 hydrog ? ? C DC 4 O2 ? ? ? 1_555 D DC 4 N4 ? ? C DC 4 D DC 4 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog21 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DG 5 N3 ? ? C DG 5 D DG 5 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog22 hydrog ? ? C DG 5 N3 ? ? ? 1_555 D DG 5 N2 ? ? C DG 5 D DG 5 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog23 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DG 6 N3 ? ? C DG 6 D DG 6 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog24 hydrog ? ? C DG 6 N3 ? ? ? 1_555 D DG 6 N2 ? ? C DG 6 D DG 6 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog25 hydrog ? ? C DA 7 N6 ? ? ? 1_555 D DA 7 N7 ? ? C DA 7 D DA 7 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog26 hydrog ? ? C DA 7 N7 ? ? ? 1_555 D DA 7 N6 ? ? C DA 7 D DA 7 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog27 hydrog ? ? C DC 8 N4 ? ? ? 1_555 D DC 8 O2 ? ? C DC 8 D DC 8 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog28 hydrog ? ? C DC 8 O2 ? ? ? 1_555 D DC 8 N4 ? ? C DC 8 D DC 8 1_555 ? ? ? ? ? ? TYPE_15_PAIR ? ? ? hydrog29 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DG 9 N3 ? ? C DG 9 D DG 9 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog30 hydrog ? ? C DG 9 N3 ? ? ? 1_555 D DG 9 N2 ? ? C DG 9 D DG 9 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog31 hydrog ? ? C DA 10 N6 ? ? ? 1_555 D DA 10 N7 ? ? C DA 10 D DA 10 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog32 hydrog ? ? C DA 10 N7 ? ? ? 1_555 D DA 10 N6 ? ? C DA 10 D DA 10 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B MG 101 ? 1 'binding site for residue MG B 101' AC2 Software C MG 101 ? 2 'binding site for residue MG C 101' AC3 Software C MG 102 ? 1 'binding site for residue MG C 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 DA B 10 ? DA B 10 . ? 1_555 ? 2 AC2 2 DC C 4 ? DC C 4 . ? 1_555 ? 3 AC2 2 DG C 5 ? DG C 5 . ? 1_555 ? 4 AC3 1 DA C 7 ? DA C 7 . ? 1_555 ? # _atom_sites.entry_id 4ZYM _atom_sites.fract_transf_matrix[1][1] 0.016679 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006899 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034067 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014481 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DC 8 8 8 DC DC A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DT 11 11 11 DT DT A . n B 1 1 DA 1 1 1 DA DA B . n B 1 2 DC 2 2 2 DC DC B . n B 1 3 DT 3 3 3 DT DT B . n B 1 4 DC 4 4 4 DC DC B . n B 1 5 DG 5 5 5 DG DG B . n B 1 6 DG 6 6 6 DG DG B . n B 1 7 DA 7 7 7 DA DA B . n B 1 8 DC 8 8 8 DC DC B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DA 10 10 10 DA DA B . n B 1 11 DT 11 11 11 DT DT B . n C 1 1 DA 1 1 1 DA DA C . n C 1 2 DC 2 2 2 DC DC C . n C 1 3 DT 3 3 3 DT DT C . n C 1 4 DC 4 4 4 DC DC C . n C 1 5 DG 5 5 5 DG DG C . n C 1 6 DG 6 6 6 DG DG C . n C 1 7 DA 7 7 7 DA DA C . n C 1 8 DC 8 8 8 DC DC C . n C 1 9 DG 9 9 9 DG DG C . n C 1 10 DA 10 10 10 DA DA C . n C 1 11 DT 11 11 11 DT DT C . n D 1 1 DA 1 1 1 DA DA D . n D 1 2 DC 2 2 2 DC DC D . n D 1 3 DT 3 3 3 DT DT D . n D 1 4 DC 4 4 4 DC DC D . n D 1 5 DG 5 5 5 DG DG D . n D 1 6 DG 6 6 6 DG DG D . n D 1 7 DA 7 7 7 DA DA D . n D 1 8 DC 8 8 8 DC DC D . n D 1 9 DG 9 9 9 DG DG D . n D 1 10 DA 10 10 10 DA DA D . n D 1 11 DT 11 11 11 DT DT D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MG 1 101 3 MG MG A . F 2 MG 1 101 5 MG MG B . G 2 MG 1 101 1 MG MG C . H 2 MG 1 102 2 MG MG C . I 3 HOH 1 201 7 HOH HOH C . I 3 HOH 2 202 1 HOH HOH C . I 3 HOH 3 203 13 HOH HOH C . J 3 HOH 1 101 8 HOH HOH D . J 3 HOH 2 102 9 HOH HOH D . J 3 HOH 3 103 12 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F 2 1 C,D,G,H,I,J # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2015-12-16 2 'Structure model' 1 1 2016-07-06 3 'Structure model' 1 2 2016-07-20 4 'Structure model' 1 3 2017-09-20 5 'Structure model' 1 4 2019-11-27 6 'Structure model' 1 5 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Author supporting evidence' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_audit_support 2 4 'Structure model' pdbx_struct_oper_list 3 5 'Structure model' pdbx_audit_support 4 6 'Structure model' chem_comp_atom 5 6 'Structure model' chem_comp_bond 6 6 'Structure model' database_2 7 6 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 3 5 'Structure model' '_pdbx_audit_support.funding_organization' 4 6 'Structure model' '_database_2.pdbx_DOI' 5 6 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_phasing_MR.entry_id 4ZYM _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 3.000 _pdbx_phasing_MR.d_res_low_rotation 68.070 _pdbx_phasing_MR.d_res_high_translation 3.000 _pdbx_phasing_MR.d_res_low_translation 68.070 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.5.6 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9-1692 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.15 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 ? 'model building' ? ? ? ? ? ? ? ? ? ? ? Coot ? ? ? . 6 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A DC 2 ? N1 ? A DC 2 N1 2 1 Y 1 A DC 2 ? C2 ? A DC 2 C2 3 1 Y 1 A DC 2 ? O2 ? A DC 2 O2 4 1 Y 1 A DC 2 ? N3 ? A DC 2 N3 5 1 Y 1 A DC 2 ? C4 ? A DC 2 C4 6 1 Y 1 A DC 2 ? N4 ? A DC 2 N4 7 1 Y 1 A DC 2 ? C5 ? A DC 2 C5 8 1 Y 1 A DC 2 ? C6 ? A DC 2 C6 9 1 Y 1 A DT 11 ? "O5'" ? A DT 11 "O5'" 10 1 Y 1 A DT 11 ? "C5'" ? A DT 11 "C5'" 11 1 Y 1 A DT 11 ? "C4'" ? A DT 11 "C4'" 12 1 Y 1 A DT 11 ? "O4'" ? A DT 11 "O4'" 13 1 Y 1 A DT 11 ? "C3'" ? A DT 11 "C3'" 14 1 Y 1 A DT 11 ? "O3'" ? A DT 11 "O3'" 15 1 Y 1 A DT 11 ? "C2'" ? A DT 11 "C2'" 16 1 Y 1 A DT 11 ? "C1'" ? A DT 11 "C1'" 17 1 Y 1 A DT 11 ? N1 ? A DT 11 N1 18 1 Y 1 A DT 11 ? C2 ? A DT 11 C2 19 1 Y 1 A DT 11 ? O2 ? A DT 11 O2 20 1 Y 1 A DT 11 ? N3 ? A DT 11 N3 21 1 Y 1 A DT 11 ? C4 ? A DT 11 C4 22 1 Y 1 A DT 11 ? O4 ? A DT 11 O4 23 1 Y 1 A DT 11 ? C5 ? A DT 11 C5 24 1 Y 1 A DT 11 ? C7 ? A DT 11 C7 25 1 Y 1 A DT 11 ? C6 ? A DT 11 C6 26 1 Y 1 B DC 2 ? N1 ? B DC 2 N1 27 1 Y 1 B DC 2 ? C2 ? B DC 2 C2 28 1 Y 1 B DC 2 ? O2 ? B DC 2 O2 29 1 Y 1 B DC 2 ? N3 ? B DC 2 N3 30 1 Y 1 B DC 2 ? C4 ? B DC 2 C4 31 1 Y 1 B DC 2 ? N4 ? B DC 2 N4 32 1 Y 1 B DC 2 ? C5 ? B DC 2 C5 33 1 Y 1 B DC 2 ? C6 ? B DC 2 C6 34 1 Y 1 B DT 11 ? "O5'" ? B DT 11 "O5'" 35 1 Y 1 B DT 11 ? "C5'" ? B DT 11 "C5'" 36 1 Y 1 B DT 11 ? "C4'" ? B DT 11 "C4'" 37 1 Y 1 B DT 11 ? "O4'" ? B DT 11 "O4'" 38 1 Y 1 B DT 11 ? "C3'" ? B DT 11 "C3'" 39 1 Y 1 B DT 11 ? "O3'" ? B DT 11 "O3'" 40 1 Y 1 B DT 11 ? "C2'" ? B DT 11 "C2'" 41 1 Y 1 B DT 11 ? "C1'" ? B DT 11 "C1'" 42 1 Y 1 B DT 11 ? N1 ? B DT 11 N1 43 1 Y 1 B DT 11 ? C2 ? B DT 11 C2 44 1 Y 1 B DT 11 ? O2 ? B DT 11 O2 45 1 Y 1 B DT 11 ? N3 ? B DT 11 N3 46 1 Y 1 B DT 11 ? C4 ? B DT 11 C4 47 1 Y 1 B DT 11 ? O4 ? B DT 11 O4 48 1 Y 1 B DT 11 ? C5 ? B DT 11 C5 49 1 Y 1 B DT 11 ? C7 ? B DT 11 C7 50 1 Y 1 B DT 11 ? C6 ? B DT 11 C6 51 1 Y 1 C DT 11 ? "C5'" ? C DT 11 "C5'" 52 1 Y 1 C DT 11 ? "C4'" ? C DT 11 "C4'" 53 1 Y 1 C DT 11 ? "O4'" ? C DT 11 "O4'" 54 1 Y 1 C DT 11 ? "C3'" ? C DT 11 "C3'" 55 1 Y 1 C DT 11 ? "O3'" ? C DT 11 "O3'" 56 1 Y 1 C DT 11 ? "C2'" ? C DT 11 "C2'" 57 1 Y 1 C DT 11 ? "C1'" ? C DT 11 "C1'" 58 1 Y 1 C DT 11 ? N1 ? C DT 11 N1 59 1 Y 1 C DT 11 ? C2 ? C DT 11 C2 60 1 Y 1 C DT 11 ? O2 ? C DT 11 O2 61 1 Y 1 C DT 11 ? N3 ? C DT 11 N3 62 1 Y 1 C DT 11 ? C4 ? C DT 11 C4 63 1 Y 1 C DT 11 ? O4 ? C DT 11 O4 64 1 Y 1 C DT 11 ? C5 ? C DT 11 C5 65 1 Y 1 C DT 11 ? C7 ? C DT 11 C7 66 1 Y 1 C DT 11 ? C6 ? C DT 11 C6 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 4ZYM _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DA 1 1_555 5.367 -5.621 -0.293 12.027 -29.222 178.180 1 A_DA1:DA1_B A 1 ? B 1 ? 2 7 1 A DC 4 1_555 B DC 4 1_555 1.782 0.937 0.052 1.334 -4.669 179.582 2 A_DC4:DC4_B A 4 ? B 4 ? 15 2 1 A DG 5 1_555 B DG 5 1_555 3.241 8.036 0.112 -14.212 27.735 179.596 3 A_DG5:DG5_B A 5 ? B 5 ? 4 12 1 A DG 6 1_555 B DG 6 1_555 -3.536 -8.113 0.297 15.912 -22.923 -179.653 4 A_DG6:DG6_B A 6 ? B 6 ? 4 12 1 A DA 7 1_555 B DA 7 1_555 -5.710 5.162 0.671 -26.581 21.279 -169.837 5 A_DA7:DA7_B A 7 ? B 7 ? 2 7 1 A DC 8 1_555 B DC 8 1_555 1.691 1.322 0.219 -6.217 3.188 177.703 6 A_DC8:DC8_B A 8 ? B 8 ? 15 2 1 A DG 9 1_555 B DG 9 1_555 -3.303 -7.852 0.368 -1.367 -35.275 -175.832 7 A_DG9:DG9_B A 9 ? B 9 ? 4 12 1 A DA 10 1_555 B DA 10 1_555 5.414 -5.222 -0.149 11.101 -33.945 177.675 8 A_DA10:DA10_B A 10 ? B 10 ? 2 7 1 C DA 1 1_555 D DA 1 1_555 5.495 -5.089 -0.012 13.004 -27.674 177.442 9 C_DA1:DA1_D C 1 ? D 1 ? 2 7 1 C DC 4 1_555 D DC 4 1_555 -2.031 -1.624 -0.348 -2.281 1.356 -176.829 10 C_DC4:DC4_D C 4 ? D 4 ? 15 2 1 C DG 5 1_555 D DG 5 1_555 3.238 8.016 -0.046 -11.132 28.392 177.847 11 C_DG5:DG5_D C 5 ? D 5 ? 4 12 1 C DG 6 1_555 D DG 6 1_555 -3.761 -8.169 -0.264 18.073 -21.650 -178.454 12 C_DG6:DG6_D C 6 ? D 6 ? 4 12 1 C DA 7 1_555 D DA 7 1_555 -6.066 4.968 0.485 -23.515 22.940 -168.368 13 C_DA7:DA7_D C 7 ? D 7 ? 2 7 1 C DC 8 1_555 D DC 8 1_555 -1.735 -0.900 0.026 1.096 1.371 -177.854 14 C_DC8:DC8_D C 8 ? D 8 ? 15 2 1 C DG 9 1_555 D DG 9 1_555 -3.356 -8.161 0.106 -7.845 -31.212 -177.809 15 C_DG9:DG9_D C 9 ? D 9 ? 4 12 1 C DA 10 1_555 D DA 10 1_555 5.834 -5.423 0.125 15.619 -36.016 179.774 16 C_DA10:DA10_D C 10 ? D 10 ? 2 7 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 4 1_555 B DC 4 1_555 A DG 5 1_555 B DG 5 1_555 -0.083 -0.074 2.954 1.692 0.103 60.230 -0.078 0.157 2.951 0.103 -1.686 60.252 1 AA_DC4DG5:DG5DC4_BB A 4 ? B 4 ? A 5 ? B 5 ? 1 A DG 5 1_555 B DG 5 1_555 A DG 6 1_555 B DG 6 1_555 -0.321 -0.072 6.910 -0.147 1.673 172.487 -0.039 0.161 6.910 0.838 0.074 172.488 2 AA_DG5DG6:DG6DG5_BB A 5 ? B 5 ? A 6 ? B 6 ? 1 A DG 6 1_555 B DG 6 1_555 A DA 7 1_555 B DA 7 1_555 -0.116 -0.699 4.460 -4.207 -4.203 -10.950 9.910 -7.228 3.648 20.188 -20.207 -12.456 3 AA_DG6DA7:DA7DG6_BB A 6 ? B 6 ? A 7 ? B 7 ? 1 A DA 7 1_555 B DA 7 1_555 A DC 8 1_555 B DC 8 1_555 -0.939 0.330 2.966 -5.862 12.618 -112.568 -0.326 -0.623 2.901 -7.568 -3.516 -113.130 4 AA_DA7DC8:DC8DA7_BB A 7 ? B 7 ? A 8 ? B 8 ? 1 A DC 8 1_555 B DC 8 1_555 A DG 9 1_555 B DG 9 1_555 -0.753 -0.358 3.395 1.344 1.257 -114.611 0.199 -0.432 3.403 -0.747 0.799 -114.621 5 AA_DC8DG9:DG9DC8_BB A 8 ? B 8 ? A 9 ? B 9 ? 1 A DG 9 1_555 B DG 9 1_555 A DA 10 1_555 B DA 10 1_555 0.213 0.136 4.806 -1.090 1.974 171.761 0.065 -0.108 4.806 0.990 0.546 171.762 6 AA_DG9DA10:DA10DG9_BB A 9 ? B 9 ? A 10 ? B 10 ? 1 C DC 4 1_555 D DC 4 1_555 C DG 5 1_555 D DG 5 1_555 -0.033 -0.127 2.986 -2.335 3.519 -120.783 0.043 -0.039 2.987 -2.024 -1.343 -120.827 7 CC_DC4DG5:DG5DC4_DD C 4 ? D 4 ? C 5 ? D 5 ? 1 C DG 5 1_555 D DG 5 1_555 C DG 6 1_555 D DG 6 1_555 -0.011 0.108 7.052 1.880 -1.026 178.755 0.054 0.006 7.052 -0.513 -0.940 178.755 8 CC_DG5DG6:DG6DG5_DD C 5 ? D 5 ? C 6 ? D 6 ? 1 C DG 6 1_555 D DG 6 1_555 C DA 7 1_555 D DA 7 1_555 -0.384 -0.872 4.556 3.169 -0.925 -10.497 6.548 4.853 4.384 4.902 16.786 -11.002 9 CC_DG6DA7:DA7DG6_DD C 6 ? D 6 ? C 7 ? D 7 ? 1 C DA 7 1_555 D DA 7 1_555 C DC 8 1_555 D DC 8 1_555 0.851 1.239 3.020 6.904 3.126 65.894 1.015 -0.517 3.135 2.864 -6.326 66.280 10 CC_DA7DC8:DC8DA7_DD C 7 ? D 7 ? C 8 ? D 8 ? 1 C DC 8 1_555 D DC 8 1_555 C DG 9 1_555 D DG 9 1_555 0.394 -0.501 3.211 2.460 -0.024 69.298 -0.439 -0.258 3.222 -0.021 -2.163 69.336 11 CC_DC8DG9:DG9DC8_DD C 8 ? D 8 ? C 9 ? D 9 ? 1 C DG 9 1_555 D DG 9 1_555 C DA 10 1_555 D DA 10 1_555 0.014 0.167 4.807 -0.464 1.357 169.476 0.081 -0.008 4.807 0.682 0.233 169.477 12 CC_DG9DA10:DA10DG9_DD C 9 ? D 9 ? C 10 ? D 10 ? # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, United States)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number DMR1149665 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4RIM _pdbx_initial_refinement_model.details ? #